BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6003
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A + +A
Sbjct: 1 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQA 60
Query: 68 LAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVS 101
L E+ EI +Y+KDG S D+ PV
Sbjct: 61 LLGAEERKVEIAFYRKDG---SCFLCLVDVVPVK 91
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A + +A
Sbjct: 26 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQA 85
Query: 68 LAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVS 101
L E+ EI +Y+KDG S D+ PV
Sbjct: 86 LLGAEERKVEIAFYRKDG---SCFLCLVDVVPVK 116
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A + +A
Sbjct: 26 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQA 85
Query: 68 LAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVS 101
L E+ EI +Y+KDG S D+ PV
Sbjct: 86 LLGAEERKVEIAFYRKDG---SCFLCLVDVVPVK 116
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A + +A
Sbjct: 29 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQA 88
Query: 68 LAAGVEKHFEILYYKKDG 85
L E+ EI +Y+KDG
Sbjct: 89 LLGAEERKVEIAFYRKDG 106
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+SF++ + L II+ SDGF LT +SR E+M ++A +FL GP T Q VQ +++A
Sbjct: 10 EKSFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNA--RFLQGPETDQATVQKIRDA 67
Query: 68 LAAGVEKHFEILYYKKDGK 86
+ E +++ Y K GK
Sbjct: 68 IRDQRETTVQLINYTKSGK 86
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ + L II+ SDGF LT +SR E++ ++A +FL GP T Q VQ +++A+
Sbjct: 8 KNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNA--RFLQGPETDQATVQKIRDAI 65
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 66 RDQRETTVQLINYTKSGK 83
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++++ L II+ SD F LT +SR E++ ++ C+FL GP T Q VQ +++A+
Sbjct: 8 KNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRN--CRFLQGPETDQATVQKIRDAI 65
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 66 RDQREITVQLINYTKSGK 83
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ ++ L I+Y S GF LTG+S +++ ++ C+FL GP T AV ++ A+
Sbjct: 46 QNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN--CRFLQGPETDPRAVDKIRNAI 103
Query: 69 AAGVEKHFEILYYKKDG 85
GV+ +L Y++DG
Sbjct: 104 TKGVDTSVCLLNYRQDG 120
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ ++ L I+Y S GF LTG+S +++ ++ C+FL GP T AV ++ A+
Sbjct: 50 QNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN--CRFLQGPETDPRAVDKIRNAI 107
Query: 69 AAGVEKHFEILYYKKDG 85
GV+ +L Y++DG
Sbjct: 108 TKGVDTSVCLLNYRQDG 124
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++++ L II+ SD F LT +SR E++ ++A +FL GP T Q VQ +++A+
Sbjct: 8 KNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNA--RFLQGPETDQATVQKIRDAI 65
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 66 RDQREITVQLINYTKSGK 83
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAV 61
T ++F++ + L II+ SD F +LT +SR E++ ++ C+FL GP T + V
Sbjct: 4 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATV 61
Query: 62 QVVKEALAAGVEKHFEILYYKKDGK 86
+ +++A+ E +++ Y K GK
Sbjct: 62 RKIRDAIDNQTEVTVQLINYTKSGK 86
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo
Dark Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAV 61
T ++F++ + L II+ SD F +LT +SR E++ ++ C+FL GP T + V
Sbjct: 6 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATV 63
Query: 62 QVVKEALAAGVEKHFEILYYKKDGK 86
+ +++A+ E +++ Y K GK
Sbjct: 64 RKIRDAIDNQTEVTVQLINYTKSGK 88
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data
Set Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 10 SFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALA 69
+F+VA++ L C ++Y S+GF +TG+ EV+ + C+FL G T VQ +++A+
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIK 62
Query: 70 AGVEKHFEILYYKKDG 85
G +L Y+KDG
Sbjct: 63 KGEACSVRLLNYRKDG 78
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F+V+++ C I+Y S GF +TG+S E++ ++ C+FL GP T ++ V +++ +
Sbjct: 17 QTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN--CRFLQGPDTDKNEVAKIRDCV 74
Query: 69 AAGVEKHFEILYYKKDG 85
G +L YKKDG
Sbjct: 75 KNGKSYCGRLLNYKKDG 91
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
Length = 104
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
+SF++ + L II+ SD F LT ++R EV+ + C+FL G T + AVQ++++A+
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN--CRFLQGRGTDRKAVQLIRDAV 58
Query: 69 AAGVEKHFEILYYKKDGK 86
+ ++L Y K G+
Sbjct: 59 KEQRDVTVQVLNYTKGGR 76
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ + L II+ SD F +LT +SR E++ ++ C+FL GP T + V+ +++A+
Sbjct: 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATVRKIRDAI 79
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 80 DNQTEVTVQLINYTKSGK 97
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F+V+++ I+Y S GF +TG++ EV+ ++ C+FL G T + ++E L
Sbjct: 18 QTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRN--CRFLQGSGTDADELAKIRETL 75
Query: 69 AAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
AAG IL YKKDG S+ ++ ++P+
Sbjct: 76 AAGNNYCGRILNYKKDGT------SFWNLLTIAPI 104
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State)
Length = 128
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAA 70
L+ N HL I++ + F +LTG+ EVM ++ C+FL G T V+ +K A+AA
Sbjct: 10 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRN--CRFLQGHGTDPAHVRAIKSAIAA 67
Query: 71 GVEKHFEILYYKKDGK 86
+I+ YKK G+
Sbjct: 68 EKPIDIDIINYKKSGE 83
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ + L II+ SD F +LT +SR E++ ++A +FL GP T + V+ +++A+
Sbjct: 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNA--RFLQGPETDRATVRKIRDAI 79
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 80 DNQTEVTVQLINYTKSGK 97
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
++F++ + L II+ SD F +LT +SR E++ ++ +FL GP T + V+ +++A+
Sbjct: 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNM--RFLQGPETDRATVRKIRDAI 79
Query: 69 AAGVEKHFEILYYKKDGK 86
E +++ Y K GK
Sbjct: 80 DNQTEVTVQLINYTKSGK 97
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 7 TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKE 66
+N +VA +IY + F LTG+SR E++ QD C+FL G Q +++
Sbjct: 34 SNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQD--CRFLQGDDRDQLGRARIRK 91
Query: 67 ALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPV 100
A+A G + Y+KDG S + ITPV
Sbjct: 92 AMAEGRPCREVLRNYRKDG---SAFWNELSITPV 122
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
H ++ + L I+Y + GF ++TG+ E++ ++ C+FL G T V ++
Sbjct: 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKN--CRFLQGKHTDPAEVDNIR 64
Query: 66 EALAAGVEKHFEILYYKKDG 85
AL +I YKKDG
Sbjct: 65 TALQNKEPVTVQIQNYKKDG 84
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 49 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTIRKAIDRN 106
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 107 AEVQVEVVNFKKNGQ 121
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 50 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 107
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 108 AEVQVEVVNFKKNGQ 122
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 50 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 107
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 108 AEVQVEVVNFKKNGQ 122
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 53 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 110
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 111 AEVQVEVVNFKKNGQ 125
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 53 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 110
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 111 AEVQVEVVNFKKNGQ 125
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 53 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 110
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 111 AEVQVEVVNFKKNGQ 125
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
I+Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 50 IVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 107
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 108 AEVQVEVVNFKKNGQ 122
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------LTSQHAVQVVKEALAAG 71
++Y S+ F +TG+S AEV+ ++ C+FL P + + +++A+
Sbjct: 53 VVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRN 110
Query: 72 VEKHFEILYYKKDGK 86
E E++ +KK+G+
Sbjct: 111 AEVQVEVVNFKKNGQ 125
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 12 LVANSHLGLC-----HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKE 66
+ ANS + L IIY + CR +G + E++ Q L PL Q + ++E
Sbjct: 117 MDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSP--SILDSPLADQETLAAMQE 174
Query: 67 ALAAGVEKHFEILYYKKDG 85
AL AG +L ++ G
Sbjct: 175 ALQAGQPWSGRLLNRRRTG 193
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQD 45
I+Y +D FC ++ + R E++ QD
Sbjct: 10 RILYANDNFCAVSRYGREELVGQD 33
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 12 LVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAG 71
+V++ L +I + F LTG+S E + ++ C+FL G T +++ G
Sbjct: 77 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRN--CRFLAGSGTEPWLTDKIRQ----G 130
Query: 72 VEKH----FEILYYKKDG 85
V +H EIL YKKDG
Sbjct: 131 VREHKPVLVEILNYKKDG 148
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
+D++ KF + + +++ +E K + +L +D K+ ++ YG IT +
Sbjct: 227 EDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 286
Query: 104 VPVHT 108
+ HT
Sbjct: 287 IFCHT 291
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
+D++ KF + + +++ +E K + +L +D K+ ++ YG IT +
Sbjct: 211 EDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 270
Query: 104 VPVHT 108
+ HT
Sbjct: 271 IFCHT 275
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
+D++ KF + + +++ +E K + +L +D K+ ++ YG IT +
Sbjct: 248 EDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 307
Query: 104 VPVHT 108
+ HT
Sbjct: 308 IFCHT 312
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
+D++ KF + + +++ +E K + +L +D K+ ++ YG IT +
Sbjct: 278 EDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 337
Query: 104 VPVHT 108
+ HT
Sbjct: 338 IFCHT 342
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 36 FSRAEVMQQDAICKFLHGP------LTSQHAVQVVKEALAA 70
+ E +Q+D+ICK ++ P +Q A ++ ++A+AA
Sbjct: 224 YPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAA 264
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 36 FSRAEVMQQDAICKFLHGP------LTSQHAVQVVKEALAA 70
+ E +Q+D+ICK ++ P +Q A ++ ++A+AA
Sbjct: 224 YPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAA 264
>pdb|4IL0|A Chain A, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|B Chain B, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|C Chain C, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|D Chain D, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|E Chain E, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|F Chain F, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|G Chain G, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|H Chain H, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
Length = 466
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
Q+ C+ PL ++ V +A GVE +E + + GG+ D P+ +
Sbjct: 391 QEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYL 450
Query: 104 VP 105
+P
Sbjct: 451 IP 452
>pdb|4GYP|C Chain C, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|D Chain D, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 458
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 44 QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGDITPVSPV 103
Q+ C+ PL ++ V +A GVE +E + + GG+ D P+ +
Sbjct: 383 QEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYL 442
Query: 104 VP 105
+P
Sbjct: 443 IP 444
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,435,470
Number of Sequences: 62578
Number of extensions: 121139
Number of successful extensions: 294
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 41
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)