Query psy6003
Match_columns 109
No_of_seqs 128 out of 1003
Neff 11.1
Searched_HMMs 13730
Date Sat Aug 17 00:07:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6003.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6003hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9la_ d.110.3.6 (A:) Putativ 99.8 6.6E-20 4.8E-24 96.6 11.8 85 7-93 2-86 (109)
2 d1jnua_ d.110.3.6 (A:) Photore 99.8 5.8E-18 4.2E-22 88.2 11.3 82 10-93 2-83 (104)
3 d1mzua_ d.110.3.1 (A:) PYP dom 99.7 6E-17 4.4E-21 85.3 10.7 89 2-94 7-95 (110)
4 d1bywa_ d.110.3.6 (A:) Erg pot 99.7 3.5E-16 2.6E-20 82.1 11.9 83 10-93 3-86 (110)
5 d1ew0a_ d.110.3.2 (A:) Histidi 99.7 3.9E-16 2.8E-20 83.9 10.4 88 2-94 20-111 (130)
6 d1nwza_ d.110.3.1 (A:) Photoac 99.7 2.7E-16 2E-20 84.4 9.4 89 2-94 21-109 (125)
7 d1v9ya_ d.110.3.2 (A:) Direct 99.6 6E-16 4.4E-20 81.1 8.1 88 2-94 5-96 (113)
8 d1xj3a1 d.110.3.2 (A:154-259) 99.6 2.4E-14 1.7E-18 74.0 9.5 81 9-94 1-85 (106)
9 d1p97a_ d.110.3.7 (A:) Hypoxia 99.5 3.9E-14 2.9E-18 74.4 6.6 78 11-93 9-86 (114)
10 d1ll8a_ d.110.3.5 (A:) N-termi 99.5 1.7E-14 1.3E-18 76.0 3.8 89 3-95 3-95 (114)
11 d1oj5a_ d.110.3.8 (A:) PAS dom 99.2 2.8E-12 2.1E-16 67.0 3.6 77 12-93 6-85 (109)
12 d2oola2 d.110.3.9 (A:26-139) S 98.1 2.5E-06 1.9E-10 44.1 4.4 40 11-54 20-59 (114)
13 d2o9ca2 d.110.3.9 (A:4-130) Ba 96.2 0.017 1.2E-06 29.9 6.4 39 11-53 38-76 (127)
14 d2veaa3 d.110.3.9 (A:4-130) Ph 95.7 0.0055 4E-07 31.8 3.1 41 11-55 29-69 (127)
15 d3c2wa3 d.110.3.9 (A:5-117) Ba 84.9 1.3 9.7E-05 21.9 5.7 70 11-91 25-94 (113)
16 d1tdha3 g.39.1.8 (A:247-290) E 56.4 5.3 0.00039 15.9 2.4 21 79-102 24-44 (44)
17 d1uxja1 c.2.1.5 (A:2-143) Mala 35.8 3.4 0.00024 21.2 -0.1 37 4-44 106-142 (142)
18 d1unda_ a.14.1.1 (A:) Advillin 32.4 15 0.0011 14.1 1.6 19 27-45 4-22 (36)
19 d1yu8x1 a.14.1.1 (X:42-76) Vil 28.8 18 0.0013 13.7 2.0 19 27-45 3-21 (35)
20 d1wi9a_ a.4.5.47 (A:) Hypothet 23.9 14 0.001 16.6 0.9 15 12-29 53-67 (72)
21 d1smpi_ b.61.2.1 (I:) Metallop 21.7 45 0.0032 16.0 2.7 21 7-29 61-81 (100)
22 d1l1oc_ b.40.4.3 (C:) Replicat 21.3 58 0.0042 17.1 3.9 23 20-42 88-110 (178)
No 1
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.84 E-value=6.6e-20 Score=96.62 Aligned_cols=85 Identities=32% Similarity=0.590 Sum_probs=73.8
Q ss_pred CCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEEecCCC
Q psy6003 7 TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGK 86 (109)
Q Consensus 7 ~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~ 86 (109)
..++++++|...++|+|+|+|++|++++||+++|++|++ ...+.++.........+.+.+.+++.+..++..+++||+
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~ 79 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGT 79 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCc--ceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCe
Confidence 568899999655689999999999999999999999998 566776766677778888889999999999999999999
Q ss_pred EEEEeee
Q psy6003 87 YSSVGGS 93 (109)
Q Consensus 87 ~~~~~~~ 93 (109)
.+|++++
T Consensus 80 ~~w~~~~ 86 (109)
T d1n9la_ 80 PFWNLLT 86 (109)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999544
No 2
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.78 E-value=5.8e-18 Score=88.22 Aligned_cols=82 Identities=32% Similarity=0.522 Sum_probs=71.7
Q ss_pred cEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEEecCCCEEE
Q psy6003 10 SFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSS 89 (109)
Q Consensus 10 ~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~ 89 (109)
.++++|+..++++|+|+|++|++++||+.++++|++ ...+..+.........+...+..++.+..+.+.++++|+.+|
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 79 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN--CRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFW 79 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCcc--ceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEE
Confidence 467888766689999999999999999999999998 566777777778888888889999999999999999999999
Q ss_pred Eeee
Q psy6003 90 VGGS 93 (109)
Q Consensus 90 ~~~~ 93 (109)
++++
T Consensus 80 ~~~~ 83 (104)
T d1jnua_ 80 NLFH 83 (104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9543
No 3
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.73 E-value=6e-17 Score=85.29 Aligned_cols=89 Identities=9% Similarity=-0.079 Sum_probs=68.7
Q ss_pred cccccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEE
Q psy6003 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81 (109)
Q Consensus 2 ~~~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (109)
++++++|++++++| .+|+|+++|+++++++||+++|++|++. ...+.++.........+.+.+.++..........
T Consensus 7 A~ld~~p~gvi~~D---~~G~I~~~N~aa~~~~G~~~eellG~~~-~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~l 82 (110)
T d1mzua_ 7 AEFDALPVGAIQVD---GSGVIHRYNRTESRLSGRIPERVIGRNF-FTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF 82 (110)
T ss_dssp TTGGGCSSEEEEEE---TTCBEEEECHHHHHHHCCCHHHHTTSBC-CCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE
T ss_pred HHHhCCCcEEEEEc---CCCCEEEeHHHHHHHHcCCHHHHcCCCH-HHhcCChhhhHHHHHHHHHHHhccccCcceEEEE
Confidence 57899999999999 8999999999999999999999999982 3555555555555666777777776543333335
Q ss_pred ecCCCEEEEeeec
Q psy6003 82 KKDGKYSSVGGSY 94 (109)
Q Consensus 82 ~~~g~~~~~~~~~ 94 (109)
+++|..+++++..
T Consensus 83 ~~~G~~~~v~v~~ 95 (110)
T d1mzua_ 83 DFQMAPVRVQIRM 95 (110)
T ss_dssp ECSSCEEEEEEEE
T ss_pred ecCCceEEEEEEE
Confidence 6799988886544
No 4
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=3.5e-16 Score=82.08 Aligned_cols=83 Identities=43% Similarity=0.797 Sum_probs=68.4
Q ss_pred cEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccc-cccCCCCcHHHHHHHHHHHHcCCeeEEEEEEEecCCCEE
Q psy6003 10 SFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICK-FLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYS 88 (109)
Q Consensus 10 ~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 88 (109)
.+++.|....+..|+|+|++|++++||+.+|++|+++ .. .+.++.........+...+.+++.+..++..++++|+.+
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~ 81 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPC-TCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBT-TCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCc-ccccceeeheecccccccchhhcccccccceeeeeeccccee
Confidence 4677887667889999999999999999999999983 23 234556666777888888899999999999999999999
Q ss_pred EEeee
Q psy6003 89 SVGGS 93 (109)
Q Consensus 89 ~~~~~ 93 (109)
|++++
T Consensus 82 w~~~~ 86 (110)
T d1bywa_ 82 LCLVD 86 (110)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 99543
No 5
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.68 E-value=3.9e-16 Score=83.93 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=68.9
Q ss_pred cccccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCe----eEEE
Q psy6003 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVE----KHFE 77 (109)
Q Consensus 2 ~~~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e 77 (109)
+++++++++++++| .+|+|+++|+++++++||++++++|++ ...+.++.........+...+..+.. ...+
T Consensus 20 ~i~~~~~~~i~~~d---~~g~i~~~N~~~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 94 (130)
T d1ew0a_ 20 SILDTVPDATVVSA---TDGTIVSFNAAAVRQFGYAEEEVIGQN--LRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRV 94 (130)
T ss_dssp HHHTTCSSEEEEEE---TTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTTGGGHHHHHHHHHHHCCCSSTTSCEE
T ss_pred HHHHcCCCeEEEEe---CCccEEEEHHHHHHhhcCCHHHhcCCc--cccccccchhHHHHHHHHHHHHhCCCccccceee
Confidence 36899999999999 789999999999999999999999998 56566555555544445555544432 4567
Q ss_pred EEEEecCCCEEEEeeec
Q psy6003 78 ILYYKKDGKYSSVGGSY 94 (109)
Q Consensus 78 ~~~~~~~g~~~~~~~~~ 94 (109)
+...++||..+|++++.
T Consensus 95 ~~~~~~dG~~~~v~~~~ 111 (130)
T d1ew0a_ 95 VSGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEE
Confidence 78889999999997654
No 6
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.68 E-value=2.7e-16 Score=84.44 Aligned_cols=89 Identities=13% Similarity=0.011 Sum_probs=70.6
Q ss_pred cccccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEE
Q psy6003 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81 (109)
Q Consensus 2 ~~~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (109)
+++++++++++++| .+|+|+++|+++++++||++++++|++. ..++.++.........+.+.+.++.....+....
T Consensus 21 ~~ld~~p~gi~~lD---~~G~i~~~N~a~~~l~G~~~~e~iG~~~-~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (125)
T d1nwza_ 21 GQLDGLAFGAIQLD---GDGNILQYNAAEGDITGRDPKQVIGKNF-FKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF 96 (125)
T ss_dssp HHHTTCSSEEEEEE---TTCBEEEECHHHHHHHCCCHHHHTTSBC-CCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHhCCCccEEEEe---CCCCEEEEcHHHHHhhccchHhhcCCCH-HHccCchhhhhheeeeceeeeecCCcceEEEEEe
Confidence 36789999999999 7899999999999999999999999982 4555554555555566777777777666665667
Q ss_pred ecCCCEEEEeeec
Q psy6003 82 KKDGKYSSVGGSY 94 (109)
Q Consensus 82 ~~~g~~~~~~~~~ 94 (109)
+++|+++|+++..
T Consensus 97 ~~~G~~~~v~v~l 109 (125)
T d1nwza_ 97 DYQMTPTKVKVHM 109 (125)
T ss_dssp CTTSCCEEEEEEE
T ss_pred ccCCcEEEEEEEE
Confidence 8899999986543
No 7
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.65 E-value=6e-16 Score=81.11 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=61.6
Q ss_pred cccccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHH----cCCeeEEE
Q psy6003 2 TLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALA----AGVEKHFE 77 (109)
Q Consensus 2 ~~~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e 77 (109)
+++++++++++++| .+|+|+++|+++++++||+++|++|++ ...+.+................ .......+
T Consensus 5 ~~~e~~~d~i~~~d---~~g~i~~~N~~~~~l~Gy~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 5 PALEQNMMGAVLIN---ENDEVMFFNPAAEKLWGYKREEVIGNN--IDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp HHHHTCSSEEEEEC---TTSBEEEECHHHHHHHSCCGGGTTTSB--GGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHcCcCcEEEEe---CCCCEEEEchhHhhhhccchhhhcCcc--eeccccccccccccccccccccccccccccccee
Confidence 46899999999999 789999999999999999999999998 4444443333332222222222 22234456
Q ss_pred EEEEecCCCEEEEeeec
Q psy6003 78 ILYYKKDGKYSSVGGSY 94 (109)
Q Consensus 78 ~~~~~~~g~~~~~~~~~ 94 (109)
...++++|+.+|++++.
T Consensus 80 ~~~~~~dG~~~~v~~~~ 96 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFAL 96 (113)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred eeeccccceeEEEEEEE
Confidence 77789999999996554
No 8
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.57 E-value=2.4e-14 Score=74.00 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred ccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcC----CeeEEEEEEEecC
Q psy6003 9 RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAG----VEKHFEILYYKKD 84 (109)
Q Consensus 9 ~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~ 84 (109)
|+++++| .+|+|+++|+++++++||+.+|++|++ ...+.++................. .....+...++++
T Consensus 1 dgi~~~D---~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 75 (106)
T d1xj3a1 1 DAMIVID---GHGIIQLFSTAAERLFGWSELEAIGQN--VNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 75 (106)
T ss_dssp CCEEEEE---TTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CEEEEEC---CCCcEEEEcHHHHHHhhhchHhhcCCC--cccccccccccchhhhhhhhhhhcccccccccceeeeeecc
Confidence 6899999 789999999999999999999999998 455555544444333333333322 2245678888999
Q ss_pred CCEEEEeeec
Q psy6003 85 GKYSSVGGSY 94 (109)
Q Consensus 85 g~~~~~~~~~ 94 (109)
|..+|++++.
T Consensus 76 g~~~~v~~~~ 85 (106)
T d1xj3a1 76 GTTFPMHLSI 85 (106)
T ss_dssp SCEEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 9999996544
No 9
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=3.9e-14 Score=74.45 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=61.3
Q ss_pred EEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEEecCCCEEEE
Q psy6003 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSV 90 (109)
Q Consensus 11 i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 90 (109)
+...+ .+|+++|+|+++++++||+.++++|++ ...+.++.+.....+.....+..+..+..+++.+++||+.+|+
T Consensus 9 i~r~~---~dG~i~~~N~~~~~~~G~~~~el~g~~--~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv 83 (114)
T d1p97a_ 9 LSRHS---MDMKFTYCDDRITELIGYHPEELLGRS--AYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWL 83 (114)
T ss_dssp EEEEC---TTTSCSEECTTHHHHTSSCHHHHTTSC--HHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEE
T ss_pred EEEEC---CCCcEEEECHHHHHHcCCCcccccccc--ccccccccccccceeeeeecccccceeecceeeeeecCcceEE
Confidence 33456 789999999999999999999999998 4445555555555566666666667778899999999999999
Q ss_pred eee
Q psy6003 91 GGS 93 (109)
Q Consensus 91 ~~~ 93 (109)
++.
T Consensus 84 ~~~ 86 (114)
T d1p97a_ 84 ETQ 86 (114)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 10
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47 E-value=1.7e-14 Score=75.98 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=63.8
Q ss_pred ccccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCe----eEEEE
Q psy6003 3 LKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVE----KHFEI 78 (109)
Q Consensus 3 ~~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~ 78 (109)
+-+.+.++++++|. .+|+|+++|+++++++||+.++++|++ ...+.++.........+...+..+.. ...+.
T Consensus 3 ~~~~~n~AI~~id~--~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 78 (114)
T d1ll8a_ 3 MDPEFNKAIFTVDA--KTTEILVANDKACGLLGYSSQDLIGQK--LTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVV 78 (114)
T ss_dssp SSTTTTCEEEEEET--TTCBEEEECTTHHHHHTCCTTTTTTSB--GGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSE
T ss_pred cchhcCcEEEEEEC--CCCEEEEECHHHHHhhcCCHHHHcCCC--eeeecCcccHHHHHHHHHHHHhcCCCccceeeEEE
Confidence 45678899999994 369999999999999999999999999 45565555554443333333333221 22356
Q ss_pred EEEecCCCEEEEeeecc
Q psy6003 79 LYYKKDGKYSSVGGSYG 95 (109)
Q Consensus 79 ~~~~~~g~~~~~~~~~~ 95 (109)
..++++|+.+|++++..
T Consensus 79 ~~~~~~G~~~pvevs~~ 95 (114)
T d1ll8a_ 79 DIISRSGEKIPVSVWMK 95 (114)
T ss_dssp EECCTTCCCEEEECCEE
T ss_pred EEEccCCcEEEEEEEEE
Confidence 77889999999976543
No 11
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.24 E-value=2.8e-12 Score=66.96 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=58.2
Q ss_pred EEEecCCCCeeEEEecHHHHHhhCCCh-HHHhCCccccccccCCCCc-H-HHHHHHHHHHHcCCeeEEEEEEEecCCCEE
Q psy6003 12 LVANSHLGLCHIIYCSDGFCRLTGFSR-AEVMQQDAICKFLHGPLTS-Q-HAVQVVKEALAAGVEKHFEILYYKKDGKYS 88 (109)
Q Consensus 12 ~i~d~~~~~~~i~~~N~~~~~~~g~~~-~e~~g~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 88 (109)
...| .+|+++++|++..+++||.+ +|++|++ ...+.++++. . .........+..+.....+++.+++||...
T Consensus 6 trh~---~~g~~~~vd~~~~~~~gy~~~eelig~s--~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~v 80 (109)
T d1oj5a_ 6 TKQD---TTGKIISIDTSSLRAAGRTGWEDLVRKC--IYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 80 (109)
T ss_dssp EEEC---TTCCEEEEECHHHHTTCCSCHHHHHHHH--HHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEEC---CCceEEEECHHHhhHhhcCCHHHHcCCc--HHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEE
Confidence 4456 68999999999999999985 8999999 4444444443 2 222334556677888888899999999999
Q ss_pred EEeee
Q psy6003 89 SVGGS 93 (109)
Q Consensus 89 ~~~~~ 93 (109)
|++..
T Consensus 81 Wv~t~ 85 (109)
T d1oj5a_ 81 SAHTR 85 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99654
No 12
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=98.09 E-value=2.5e-06 Score=44.06 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=32.0
Q ss_pred EEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCC
Q psy6003 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP 54 (109)
Q Consensus 11 i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~ 54 (109)
++.+|. .+++|++++++...++|+++++++|++ ...+.++
T Consensus 20 Llvld~--~d~~I~~vS~N~~~lLG~~~~~llG~~--l~dll~~ 59 (114)
T d2oola2 20 LFVVSE--TDLRIASVSANVEDLLRQPPASLLNVP--IAHYLTA 59 (114)
T ss_dssp EEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCB--GGGGBCH
T ss_pred EEEEEC--CCCEEEEEcCCHHHHhCCChHHHcCCC--HHHhCCH
Confidence 455553 479999999999999999999999999 4444443
No 13
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=96.15 E-value=0.017 Score=29.92 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=31.7
Q ss_pred EEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccC
Q psy6003 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHG 53 (109)
Q Consensus 11 i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~ 53 (109)
++.+|. .++.|+.++.....++|++.++++|++ ...+.+
T Consensus 38 LLald~--~~~~I~~~S~N~~~~lG~~~~~llG~~--l~~ll~ 76 (127)
T d2o9ca2 38 LLTADG--HSGEVLQMSLNAATFLGQEPTVLRGQT--LAALLP 76 (127)
T ss_dssp EEEEET--TTCBEEEEETTHHHHHSSCHHHHTTCB--HHHHCT
T ss_pred EEEEEC--CCCEEEEECCCHHHHhCCChHHHcCCC--HHHHCC
Confidence 455563 479999999999999999999999999 454544
No 14
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=95.66 E-value=0.0055 Score=31.84 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=32.1
Q ss_pred EEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCC
Q psy6003 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPL 55 (109)
Q Consensus 11 i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~ 55 (109)
++.+|. .+++|..++.....++|.++++++|++ ...+.++.
T Consensus 29 LLald~--~~~~I~~aS~N~~~~lG~~~~~lLG~~--l~~ll~~~ 69 (127)
T d2veaa3 29 VVVLQE--PDLTISQISANCTGILGRSPEDLLGRT--LGEVFDSF 69 (127)
T ss_dssp EEEEET--TTTEEEEEETTHHHHTSCCTTTSSTTT--TTTTSBCC
T ss_pred EEEEEC--CCCEEEEEcCCHHHHhCcChHHHcCCC--HHHHCCHH
Confidence 455553 478999999999999999999999998 44444433
No 15
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=84.90 E-value=1.3 Score=21.86 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=40.3
Q ss_pred EEEEecCCCCeeEEEecHHHHHhhCCChHHHhCCccccccccCCCCcHHHHHHHHHHHHcCCeeEEEEEEEecCCCEEEE
Q psy6003 11 FLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSV 90 (109)
Q Consensus 11 i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 90 (109)
++.+| .++.|+.++.....++|++++ .+|+. ...+.. ......+.+.+........... .+.+|..+++
T Consensus 25 LLald---~~~~I~~~S~N~~~~lg~~~~-~L~~~--~~~~~~----~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~d~ 93 (113)
T d3c2wa3 25 LVTLR---ADGMVLAASENIQALLGFVAS-PGSYL--TQEQVG----PEVLRMLEEGLTGNGPWSNSVE-TRIGEHLFDV 93 (113)
T ss_dssp EEEEC---TTSBEEEEETTHHHHTSSCCC-TTCBC--CHHHHH----HHHHHHHHHHHSCSSCCCCEEE-ECCSSSCEEE
T ss_pred EEEEc---CCCeEEEEcCCHHHHhCCChh-Hhccc--HHHHhC----HHHHHHHHhhhhcCCCceeEEE-eccCCeEEEE
Confidence 45666 578999999999999999865 45665 222221 2333444555444443333332 2345666665
Q ss_pred e
Q psy6003 91 G 91 (109)
Q Consensus 91 ~ 91 (109)
-
T Consensus 94 ~ 94 (113)
T d3c2wa3 94 I 94 (113)
T ss_dssp E
T ss_pred E
Confidence 3
No 16
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.44 E-value=5.3 Score=15.94 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=13.5
Q ss_pred EEEecCCCEEEEeeecccceecCC
Q psy6003 79 LYYKKDGKYSSVGGSYGDITPVSP 102 (109)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~i~~ 102 (109)
.++..+|+.+|+ .-+-.|+.|
T Consensus 24 sL~D~~GRTIWF---~GdpGPlaP 44 (44)
T d1tdha3 24 SLQDRHGRTIWF---QGDPGPLAP 44 (44)
T ss_dssp EEECTTSCEEEE---SSCCCTTCC
T ss_pred hhhccCCCEEEe---cCCCCCCCC
Confidence 356778999998 444445444
No 17
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=35.84 E-value=3.4 Score=21.17 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=19.7
Q ss_pred cccCCccEEEEecCCCCeeEEEecHHHHHhhCCChHHHhCC
Q psy6003 4 KHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQ 44 (109)
Q Consensus 4 ~~~~~~~i~i~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~ 44 (109)
.+..++++++.-.+ + +-.+...+.+..|+++..++|+
T Consensus 106 ~k~~p~aivivvtN-P---vDv~t~~~~~~sglp~~rViG~ 142 (142)
T d1uxja1 106 APLSPNAVIIMVNN-P---LDAMTYLAAEVSGFPKERVIGQ 142 (142)
T ss_dssp GGGCTTCEEEECSS-S---HHHHHHHHHHHHCCCGGGEEEC
T ss_pred hccCCCceEEEeCC-c---hHHHHHHHHHHHCcCcccccCc
Confidence 34566666555311 1 1112334567778887777764
No 18
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.43 E-value=15 Score=14.07 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.5
Q ss_pred cHHHHHhhCCChHHHhCCc
Q psy6003 27 SDGFCRLTGFSRAEVMQQD 45 (109)
Q Consensus 27 N~~~~~~~g~~~~e~~g~~ 45 (109)
+..|..++|.++++....+
T Consensus 4 d~dF~~vFgmsr~eF~~LP 22 (36)
T d1unda_ 4 EQDFVSVFGITRGQFAALP 22 (36)
T ss_dssp HHHHHHHHSSCHHHHHHSC
T ss_pred HHHHHHHHCcCHHHHHHCc
Confidence 3568999999999875544
No 19
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.77 E-value=18 Score=13.75 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=14.7
Q ss_pred cHHHHHhhCCChHHHhCCc
Q psy6003 27 SDGFCRLTGFSRAEVMQQD 45 (109)
Q Consensus 27 N~~~~~~~g~~~~e~~g~~ 45 (109)
+..|..++|.++++....+
T Consensus 3 d~dF~~vfgmsr~eF~~LP 21 (35)
T d1yu8x1 3 DEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp HHHHHHHHSSCHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHCc
Confidence 3568899999999976554
No 20
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.94 E-value=14 Score=16.60 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=11.3
Q ss_pred EEEecCCCCeeEEEecHH
Q psy6003 12 LVANSHLGLCHIIYCSDG 29 (109)
Q Consensus 12 ~i~d~~~~~~~i~~~N~~ 29 (109)
-++| +.|+++|++++
T Consensus 53 GViD---DRGKfIyIS~s 67 (72)
T d1wi9a_ 53 GVID---DRGKFIYITPS 67 (72)
T ss_dssp EEEC---TTCCEEECCCS
T ss_pred eEEc---CCCCEEEEcCC
Confidence 3566 68999998874
No 21
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=21.72 E-value=45 Score=15.96 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=13.9
Q ss_pred CCccEEEEecCCCCeeEEEecHH
Q psy6003 7 TNRSFLVANSHLGLCHIIYCSDG 29 (109)
Q Consensus 7 ~~~~i~i~d~~~~~~~i~~~N~~ 29 (109)
.||+|.+++.+ ...+.+.|..
T Consensus 61 tPDGiaLt~~~--Gs~i~ffsR~ 81 (100)
T d1smpi_ 61 TPDGLTLTQAD--GSAVAFFSRN 81 (100)
T ss_dssp CSSEEEEECTT--SCEEEEEEEE
T ss_pred CCCeEEEecCC--CCeEEeeeec
Confidence 58999999842 3446666554
No 22
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.31 E-value=58 Score=17.09 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=18.3
Q ss_pred CeeEEEecHHHHHhhCCChHHHh
Q psy6003 20 LCHIIYCSDGFCRLTGFSRAEVM 42 (109)
Q Consensus 20 ~~~i~~~N~~~~~~~g~~~~e~~ 42 (109)
...+...+..+.+++|.+.+++.
T Consensus 88 ~~~~~~F~~~a~~l~G~sA~EL~ 110 (178)
T d1l1oc_ 88 NQWVTCFQESAEAILGQNAAYLG 110 (178)
T ss_dssp EEEEEEEHHHHHHHHSSCHHHHH
T ss_pred CEEEEEehhhHHHHhCCCHHHHH
Confidence 34566778899999999999863
Done!