RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6003
(109 letters)
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium
channel domain, membrane protein; 2.60A {Homo sapiens}
SCOP: d.110.3.6
Length = 110
Score = 118 bits (299), Expect = 2e-36
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 8 NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A + +A
Sbjct: 1 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQA 60
Query: 68 LAAGVEKHFEILYYKKDG 85
L E+ EI +Y+KDG
Sbjct: 61 LLGAEERKVEIAFYRKDG 78
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform
CRA_B; HERG, PAS domain, voltage-gated potassium
channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Length = 138
Score = 119 bits (301), Expect = 2e-36
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
+R F++AN+ + C +IYC+DGFC L G+SRAEVMQ+ C FLHGP T + A +
Sbjct: 27 GQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIA 86
Query: 66 EALAAGVEKHFEILYYKKDG 85
+AL E+ EI +Y+KDG
Sbjct: 87 QALLGAEERKVEIAFYRKDG 106
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein,
flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB:
4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Length = 115
Score = 101 bits (255), Expect = 1e-29
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
++F++ + L II+ SDGF LT +SR E++ ++ +FL GP T Q VQ ++
Sbjct: 5 FIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRN--ARFLQGPETDQATVQKIR 62
Query: 66 EALAAGVEKHFEILYYKKDGK 86
+A+ E +++ Y K GK
Sbjct: 63 DAIRDQRETTVQLINYTKSGK 83
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 101 bits (253), Expect = 2e-29
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKE 66
+F+VA++ L C ++Y S+GF +TG+ EV+ + C+FL G T VQ +++
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRD 59
Query: 67 ALAAGVEKHFEILYYKKDG 85
A+ G +L Y+KDG
Sbjct: 60 AIKKGEACSVRLLNYRKDG 78
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 100 bits (250), Expect = 1e-28
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
++F++ + L II+ SD F +LT +SR E++ ++ C+FL GP T + V+ ++
Sbjct: 10 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATVRKIR 67
Query: 66 EALAAGVEKHFEILYYKKDGK 86
+A+ E +++ Y K GK
Sbjct: 68 DAIDNQTEVTVQLINYTKSGK 88
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 98.8 bits (247), Expect = 2e-28
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
++F+V+++ C I+Y S GF +TG+S E++ ++ C+FL GP T ++ V ++
Sbjct: 14 TLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN--CRFLQGPDTDKNEVAKIR 71
Query: 66 EALAAGVEKHFEILYYKKDG 85
+ + G +L YKKDG
Sbjct: 72 DCVKNGKSYCGRLLNYKKDG 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor,
signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB:
3ulf_A*
Length = 166
Score = 91.6 bits (228), Expect = 4e-25
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
++F++ ++ L I+Y S GF LTG+S +++ ++ C+FL GP T AV ++
Sbjct: 43 MAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN--CRFLQGPETDPRAVDKIR 100
Query: 66 EALAAGVEKHFEILYYKKDGK 86
A+ GV+ +L Y++DG
Sbjct: 101 NAITKGVDTSVCLLNYRQDGT 121
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 92.0 bits (228), Expect = 2e-24
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
+ + +V++ L +I + F LTG+S E + ++ C+FL G T ++
Sbjct: 71 ASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRN--CRFLAGSGTEPWLTDKIR 128
Query: 66 EALAAGVEKHFEILYYKKDGK 86
+ + EIL YKKDG
Sbjct: 129 QGVREHKPVLVEILNYKKDGT 149
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV,
signaling protein; HET: FAD; 1.65A {Neurospora crassa}
PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A*
3hji_A* 3rh8_B*
Length = 149
Score = 88.2 bits (219), Expect = 6e-24
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 7 TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGP-----------L 55
T+ + ++ + I+Y S+ F +TG+S AEV+ ++ C+FL P
Sbjct: 34 TSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRKY 91
Query: 56 TSQHAVQVVKEALAAGVEKHFEILYYKKDGK 86
+ + +++A+ E E++ +KK+G+
Sbjct: 92 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQ 122
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV,
PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN;
1.45A {Bacillus subtilis} PDB: 2pr6_A*
Length = 132
Score = 85.7 bits (213), Expect = 4e-23
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
H ++ + L I+Y + GF ++TG+ E++ ++ C+FL G T V ++
Sbjct: 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKN--CRFLQGKHTDPAEVDNIR 64
Query: 66 EALAAGVEKHFEILYYKKDG 85
AL +I YKKDG
Sbjct: 65 TALQNKEPVTVQIQNYKKDG 84
>3t50_A Blue-light-activated histidine kinase; PAS superfamily,
blue-light photoreceptor, FMN binding, TRAN; HET: FMN;
1.64A {Brucella melitensis}
Length = 128
Score = 84.5 bits (210), Expect = 9e-23
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
T L+ N HL I++ + F +LTG+ EVM ++ C+FL G T V+ +K
Sbjct: 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRN--CRFLQGHGTDPAHVRAIK 62
Query: 66 EALAAGVEKHFEILYYKKDG 85
A+AA +I+ YKK G
Sbjct: 63 SAIAAEKPIDIDIINYKKSG 82
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 83.8 bits (208), Expect = 4e-22
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 6 HTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVK 65
+N +VA +IY + F LTG+SR E++ QD C+FL G Q ++
Sbjct: 33 ASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQD--CRFLQGDDRDQLGRARIR 90
Query: 66 EALAAGVEKHFEILYYKKDG 85
+A+A G + Y+KDG
Sbjct: 91 KAMAEGRPCREVLRNYRKDG 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena
sativa} PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 75.0 bits (184), Expect = 1e-17
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 7 TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKE 66
++F++ + L II+ SD F +LT +SR E++ ++ +FL GP T + V+ +++
Sbjct: 20 IEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--ARFLQGPETDRATVRKIRD 77
Query: 67 ALAAGVEKHFEILYYKKDGK 86
A+ E +++ Y K GK
Sbjct: 78 AIDNQTEVTVQLINYTKSGK 97
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase,
phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A
{Methylococcus capsulatus}
Length = 227
Score = 57.4 bits (139), Expect = 2e-11
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
I+Y +D FC ++ + R E++ QD + ++ + ++ + ++ G E
Sbjct: 10 RILYANDNFCAVSRYGREELVGQD--HRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNR 67
Query: 82 KKDGKY 87
+KDG
Sbjct: 68 RKDGTR 73
Score = 54.7 bits (132), Expect = 1e-10
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
IIY + CR +G + E++ Q L PL Q + ++EAL AG +L
Sbjct: 132 RIIYANPALCRFSGMAEGELLGQS--PSILDSPLADQETLAAMQEALQAGQPWSGRLLNR 189
Query: 82 KKDGKYSSVGGSYGDITPVSPV 103
++ G Y +P+
Sbjct: 190 RRTGPAPHDAEDYWAEISTTPI 211
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 47.9 bits (115), Expect = 1e-08
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 15 NSHLGLC-----HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALA 69
+ +GL I C+D + +RA+++ + + + + +
Sbjct: 11 LAPIGLVLSRDRVIEDCNDELAAIFRCARADLIGRS-FEVLYPSSDEFERIGERISPVMI 69
Query: 70 AGVEKHFEILYYKKDG 85
A + + + G
Sbjct: 70 AHGSYADDRIMKRAGG 85
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 44.9 bits (107), Expect = 2e-07
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
I + FC G+ +EV+ + I +F Q+ + + FE LY
Sbjct: 38 TICEVNQRFCAELGYDESEVLGRS-IWEFDLMFDAEDVQTQL--SGFSVDERRKFEGLYE 94
Query: 82 KKDG 85
++DG
Sbjct: 95 RRDG 98
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 2.00A {Colwellia psychrerythraea}
Length = 124
Score = 44.4 bits (106), Expect = 3e-07
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
II + G L G+S+ + + Q LH P ++H V A+ + EI
Sbjct: 28 FIIDWNKGSETLYGYSKEQAIGQPV--NMLHVPGDTEHITSEVISAVENQGKWTGEIRML 85
Query: 82 KKDGK 86
KDG
Sbjct: 86 HKDGH 90
>2r78_A Sensor protein; sensory box sensor histidine kinase/response
regulator, structural genomics, PSI, MCSG; 1.60A
{Geobacter sulfurreducens pca}
Length = 117
Score = 41.8 bits (99), Expect = 3e-06
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
H + + C G++R E + D + S A + + G E +
Sbjct: 32 HYLDVNPAICSAIGYTRDEFLALD-WGVLSR-GVDSGWAAASLAR-IVGGEPLREERTVW 88
Query: 82 KKDGK 86
++G
Sbjct: 89 TRNGD 93
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2,
protein structure initiati northeast structural
genomics consortium; 2.60A {Desulfitobacterium
hafniense}
Length = 126
Score = 41.8 bits (99), Expect = 3e-06
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
++Y + + G++ E+M I ++ + L AG ++ +
Sbjct: 20 RLLYANTAVPKKLGYTHEELMSMH-ILTITSAGKMAEGEKIL--AELFAGKKESLPLSLE 76
Query: 82 KKDG 85
KK+G
Sbjct: 77 KKEG 80
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like
protein,haloarcula marismortui ATCC 430 structural
genomics, PSI-2; 2.65A {Haloarcula marismortui}
Length = 125
Score = 37.7 bits (88), Expect = 1e-04
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 23 IIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYYK 82
I+ + G ++ Q + + +Q + K A+ G E
Sbjct: 41 ILSVNPSMAGRLGADPDTLVGQQ-LSAVMDSEAANQRL-EAGKSAVENGTATRSE---DA 95
Query: 83 KDGKY 87
G++
Sbjct: 96 VGGRH 100
>3olo_A Two-component sensor histidine kinase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Length = 118
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQ---QDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEI 78
+Y +D CR+T +SR +++ QD + E + F+
Sbjct: 34 QFLYVNDATCRMTEYSREQLLSMNLQD-----IDVDFALHDW-----EEIRQKNNYTFKT 83
Query: 79 LYYKKDG 85
Y + G
Sbjct: 84 RYRSQSG 90
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox
sensor, atomic resolution, transferase; HET: FAD; 1.04A
{Azotobacter vinelandii}
Length = 120
Score = 33.6 bits (78), Expect = 0.003
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQD 45
+I+Y + F +TG+ EV+ ++
Sbjct: 26 NILYANRAFRTITGYGSEEVLGKN 49
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase
regulation, transferase; NMR {Homo sapiens} SCOP:
d.110.3.5
Length = 114
Score = 33.6 bits (77), Expect = 0.004
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 HHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVV 64
N++ ++ I+ +D C L G+S +++ Q + +F +
Sbjct: 5 PEFNKAIFTVDAKTT--EILVANDKACGLLGYSSQDLIGQK-LTQFFLRSDSDVVEALSE 61
Query: 65 K-----EALAAGVEKHFEILYYKKDGK 86
+ A +I+ + G+
Sbjct: 62 EHMEADGHAAVVFGTVVDII--SRSGE 86
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein.,
structural genomics, PSI-2, protein STR initiative;
1.90A {Marinobacter aquaeolei}
Length = 115
Score = 31.8 bits (73), Expect = 0.013
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILY- 80
Y L G+ + + +H P + V + G E Y
Sbjct: 15 AFEYIGPQIEALLGWPQGSWKSVEDWATRMH-PEDQEWVVNFCVKQSECG--VDHEADYR 71
Query: 81 -YKKDGKY 87
+DG Y
Sbjct: 72 ALHRDGHY 79
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
PGE; 2.49A {Geobacter sulfurreducens}
Length = 114
Score = 31.8 bits (73), Expect = 0.015
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
+ S + G +++ P + V + LA V + E +
Sbjct: 24 RYLAVSRRWREDYGLGDGDILGMS-HYDIF--PEIGEEWKSVHRRGLAGEVIRVEEDCFV 80
Query: 82 KKDGKYS--------------SVGGSYG---DIT 98
+ DG+ VGG DIT
Sbjct: 81 RADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics,
PS protein structure initiative, midwest center for
structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus
SP}
Length = 118
Score = 30.8 bits (70), Expect = 0.032
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
IIY + G R SR E++ + + + L S + ++ LA G E+ +
Sbjct: 33 RIIYVNSGCLRHVRRSRDELLGRV-VTEVLPETQGSYFD-ALCRKVLATGREQQTRVDSL 90
Query: 82 KKDGK------YSSVGG---SYGDIT 98
G + G + D+T
Sbjct: 91 YSPGMTIEVTAAADSGALVVHFRDVT 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.052
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 20/71 (28%)
Query: 20 LCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAG-------- 71
L H Y +L GF+ E+ L G + V A+A
Sbjct: 246 LAH--YVV--TAKLLGFTPGELRSY------LKGATGHSQGL-VTAVAIAETDSWESFFV 294
Query: 72 -VEKHFEILYY 81
V K +L++
Sbjct: 295 SVRKAITVLFF 305
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 31.0 bits (71), Expect = 0.058
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 51 LHGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSY------GDITPVSPVV 104
L+GPL ++ AV + A+ ++ ++Y GK G+Y + + +
Sbjct: 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVY---GGKVMDRPGNYVEPTIVTGLGHDASIA 397
>3eeh_A Putative light and redox sensing histidine kinase; structural
genomic MCSG, protein structure initiative, midwest
center for STRU genomics; HET: PG5; 1.95A {Haloarcula
marismortui}
Length = 125
Score = 29.8 bits (68), Expect = 0.091
Identities = 5/69 (7%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQ-DAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILY 80
++ + + + G S A++ + +H P + ++ + + ++
Sbjct: 33 EVLVINSAYEDIWGRSVAKLRENPHDFLNGIH-PEDRELMKDTMQSLMD---GESADVEC 88
Query: 81 --YKKDGKY 87
+
Sbjct: 89 RVNATEEYQ 97
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen
regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A
{Vibrio parahaemolyticus rimd 2210633}
Length = 115
Score = 27.8 bits (62), Expect = 0.36
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
I Y + L S +++Q H L + + L +G + +
Sbjct: 28 AIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLAL----LTQPLQSGQSITDSDVTF 83
Query: 82 KKDGKYSSVGGSYGDITPVSPV 103
DG+ + ++T VSP+
Sbjct: 84 VVDGRPLML-----EVT-VSPI 99
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold,
structural genomics, PSI-2; HET: PG5; 1.49A
{Burkholderia thailandensis}
Length = 142
Score = 27.1 bits (61), Expect = 0.93
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 24 IYCSDGFCRLTGFSRAEV-MQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILY-- 80
+Y S F ++ G+ E+ + + +H P + +K L +++ Y
Sbjct: 32 MYLSPHFKKIMGYEDHELPDEITGHRESIH-PDDRARVLAALKAHLEH--RDTYDVEYRV 88
Query: 81 YKKDGKY 87
+ G +
Sbjct: 89 RTRSGDF 95
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory
system; 3.80A {Thermotoga maritima}
Length = 349
Score = 27.2 bits (61), Expect = 1.0
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
I + +L G + V+ + + V + Y
Sbjct: 29 RITEWNKKAEQLFGLKKENVLGRR-LKDLPDFE----EIGSVAESVFENKEPVFLNF--Y 81
Query: 82 KKDGKYSSVGGS 93
K +Y ++ S
Sbjct: 82 KFGERYFNIRFS 93
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase,
two-component regulatory system; HET: PG4 PGE; 1.47A
{Thermotoga maritima} PDB: 3a0v_A*
Length = 96
Score = 25.5 bits (56), Expect = 2.0
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILYY 81
I + +L G + V+ + + A V + ++ + +Y
Sbjct: 13 RITEWNKKAEQLFGLKKENVLGRR-LKDLPDFEEIGSVAESVFEN------KEPVFLNFY 65
Query: 82 KKDGKYSSVGGSYGDITPVSPVV 104
K +Y +I SP
Sbjct: 66 KFGERYF-------NIR-FSPFR 80
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory
system, two-component signal transduction, transferase,
phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Length = 111
Score = 25.5 bits (56), Expect = 2.6
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALA-AGVEKHFEILY 80
IIY S G+ + E++ + FLH + +V+ +
Sbjct: 20 RIIYISANSKLHLGYLQGEMIGSF-LKTFLH-----EEDQFLVESYFYNEHHLMPCTFRF 73
Query: 81 YKKDGKY 87
KKD
Sbjct: 74 IKKDHTI 80
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 26.1 bits (57), Expect = 2.9
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 21 CHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEALAAGVEKHFEILY 80
C + + L G+ +++ + +LH P V + ++ L FE
Sbjct: 184 CVFLEVDERAVPLLGYLPQDLIGTSIL-TYLH-PEDRPLMVAIHQKVLKYAGHPPFEHSP 241
Query: 81 YK---KDGKY 87
+ ++G+Y
Sbjct: 242 VRFCTQNGEY 251
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 24.8 bits (54), Expect = 7.3
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 9/35 (25%)
Query: 58 QHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGG 92
+ A AG +H+ YSS+
Sbjct: 90 AIGKDLADAAKRAGTIQHY---------IYSSMPD 115
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 24.8 bits (55), Expect = 7.5
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 21/75 (28%)
Query: 52 HGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSY------GDIT------- 98
GPL ++ AV+ V++ + V K ++ GK +G ++ ++T
Sbjct: 332 QGPLINEKAVEKVEKQVNDAVSKGATVVT---GGKRHQLGKNFFEPTLLCNVTQDMLCTH 388
Query: 99 -----PVSPVVPVHT 108
P++PV+ T
Sbjct: 389 EETFGPLAPVIKFDT 403
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 24.5 bits (54), Expect = 7.5
Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 2/14 (14%)
Query: 90 VGGSYGDITPVSPV 103
VG YGD+ P +P+
Sbjct: 180 VG--YGDVVPATPI 191
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 24.4 bits (54), Expect = 9.3
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 52 HGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSY------GDIT------- 98
GPL ++ AV+ V+ +A + K ++ GK ++G + +
Sbjct: 330 LGPLINEAAVKKVESHIADALAKGASLMT---GGKRHALGHGFFEPTVLTGVKPDMDVAK 386
Query: 99 -----PVSPVVPVHT 108
P++P+ +
Sbjct: 387 EETFGPLAPLFRFAS 401
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 24.4 bits (54), Expect = 9.6
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 52 HGPLTSQHAVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSY------GDIT------- 98
GPL + AV V+E +A +EK ++ GK GG++ D+
Sbjct: 327 IGPLIDEKAVAKVEEHIADALEKGARVVC---GGKAHERGGNFFQPTILVDVPANAKVSK 383
Query: 99 -----PVSPVVPVHT 108
P++P+
Sbjct: 384 EETFGPLAPLFRFKD 398
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.424
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,142
Number of extensions: 92456
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 54
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)