RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6003
         (109 letters)



>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 8  NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQH 59
          +R F++AN+ +  C +IYC+DGFC L G+SRAEVMQ+   C FLHGP T + 
Sbjct: 1  SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRR 52


>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain,
           lov2 {Maidenhair fern (Adiantum capillus-veneris)
           [TaxId: 13818]}
          Length = 104

 Score = 47.2 bits (111), Expect = 8e-09
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 9   RSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEAL 68
           +SF++ +  L    II+ SD F  LT ++R EV+  +  C+FL G  T + AVQ++++A+
Sbjct: 1   KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN--CRFLQGRGTDRKAVQLIRDAV 58

Query: 69  AAGVEKHFEILYYKKDGKYSSVGGSYGDITPV 100
               +   ++L Y K G+          +  +
Sbjct: 59  KEQRDVTVQVLNYTKGGRAFWN---LFHLQVM 87


>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
          domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
          3055]}
          Length = 109

 Score = 46.0 bits (108), Expect = 2e-08
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 8  NRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHAVQVVKEA 67
            +F+VA++ L  C ++Y S+GF  +TG+   EV+  +  C+FL G  T    VQ +++A
Sbjct: 3  RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDA 60

Query: 68 LAAGVEKHFEILYYKKDGKY 87
          +  G      +L Y+KDG  
Sbjct: 61 IKKGEACSVRLLNYRKDGTP 80


>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 27.4 bits (60), Expect = 0.19
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 7  TNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHA 60
           N++    ++      I+  +D  C L G+S  +++ Q  + +F     +    
Sbjct: 7  FNKAIFTVDAKTT--EILVANDKACGLLGYSSQDLIGQK-LTQFFLRSDSDVVE 57


>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella
          pneumoniae [TaxId: 573]}
          Length = 131

 Score = 24.9 bits (54), Expect = 1.9
 Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 60 AVQVVKEALAAGVEKHFEILYYKKDGKYSSVGGSYGD 96
           V V  EA+ A   +   I      G  SS    Y  
Sbjct: 8  DVAVPGEAVQAS-ARQAVIHLVDIAGITSSTPADYAT 43


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 24.7 bits (54), Expect = 2.9
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 15/89 (16%)

Query: 1  MTLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHA 60
          + +K+      L    HL       C++  C         +M           P   +  
Sbjct: 3  LKVKNWETDVVLTDTLHLKSTLETGCTEHIC------MGSIMLPSQ---HTRKPEDVRTK 53

Query: 61 VQVVKEALAAGVEKHFEILYYKKDGKYSS 89
           Q+   A      K F   YY    ++ S
Sbjct: 54 DQLFPLA------KEFLDQYYSSIKRFGS 76


>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA
          {Borrelia burgdorferi [TaxId: 139]}
          Length = 322

 Score = 24.4 bits (53), Expect = 3.5
 Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 2/58 (3%)

Query: 32 RLTGFSRAEVMQ-QDAICKFLHGPLTSQHAVQVVKEAL-AAGVEKHFEILYYKKDGKY 87
           L    + +++   ++  KF+    T +       +     G     E        K 
Sbjct: 6  YLNEEEKNQILNFSESYKKFISKFKTEREVTAYALDKAKKLGFINAEEKKNLMPGDKI 63


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 22.6 bits (48), Expect = 6.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 48 CKFLHGPLTSQ 58
          C F H PLT +
Sbjct: 18 CMFSHDPLTEE 28


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
          domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 23.5 bits (51), Expect = 8.2
 Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 14/89 (15%)

Query: 1  MTLKHHTNRSFLVANSHLGLCHIIYCSDGFCRLTGFSRAEVMQQDAICKFLHGPLTSQHA 60
          + +K+  +   L    H        C    C         +M   ++ +      T    
Sbjct: 3  VRIKNWGSGEILHDTLHHKATSDFTCKSKSC------LGSIMNPKSLTRGPRDKPTPLE- 55

Query: 61 VQVVKEALAAGVEKHFEILYYKKDGKYSS 89
           +++  A        F   YY    +   
Sbjct: 56 -ELLPHA------IEFINQYYGSFKEAKI 77


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 22.7 bits (47), Expect = 9.7
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 22 HIIYCSDGFCRLTGFSRAEVMQQDAICKFLH 52
             YC D    L G+   E++ + A   +  
Sbjct: 17 KFTYCDDRITELIGYHPEELLGRSAYEFYHA 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,895
Number of extensions: 16843
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 18
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)