Query psy6008
Match_columns 123
No_of_seqs 140 out of 1101
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:13:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2272 PnbA Carboxylesterase 99.9 8.1E-28 1.7E-32 188.8 7.3 85 8-119 2-88 (491)
2 KOG4389|consensus 99.9 1.8E-27 4E-32 186.3 7.7 99 6-119 29-129 (601)
3 PF00135 COesterase: Carboxyle 99.9 8.5E-28 1.8E-32 190.6 3.8 98 6-122 21-120 (535)
4 cd00312 Esterase_lipase Estera 99.9 6.9E-26 1.5E-30 179.8 8.4 86 10-120 1-88 (493)
5 KOG1516|consensus 99.9 3.8E-24 8.3E-29 171.8 8.7 92 7-121 14-107 (545)
6 PF04596 Pox_F15: Poxvirus pro 42.7 22 0.00047 24.0 2.0 17 104-120 97-113 (136)
7 PHA02993 hypothetical protein; 34.1 32 0.00068 23.5 1.8 15 106-120 110-124 (147)
8 KOG3672|consensus 25.6 22 0.00047 28.6 -0.1 28 29-60 391-418 (487)
9 PF14791 DNA_pol_B_thumb: DNA 21.0 18 0.00039 21.1 -1.1 16 28-43 45-60 (64)
10 KOG2964|consensus 18.9 90 0.0019 24.4 2.0 25 29-54 71-98 (361)
No 1
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.94 E-value=8.1e-28 Score=188.77 Aligned_cols=85 Identities=44% Similarity=0.792 Sum_probs=72.4
Q ss_pred CCeEEccccc--eEEecCCCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCcceecccCCCCCCCcCCCCCchhhhh
Q psy6008 8 GNTVSFSTGF--QIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAAL 85 (123)
Q Consensus 8 ~~~V~t~~G~--G~~~~~~~~~~~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~~~~at~~~p~CpQ~~~~~~~~~~~~ 85 (123)
.++++|.+|+ |+. .++|.+|+|||||+||+|++||++|+++++|++++||+++||.|+|.......
T Consensus 2 ~~~~~t~~G~~~g~~-------~~~v~~w~GIpYA~pPvG~~Rfr~p~~~~~w~~~rda~~~gp~~~Q~~~~~~~----- 69 (491)
T COG2272 2 APVAETTTGKVEGIT-------VNGVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFGPACPQPFNRMGS----- 69 (491)
T ss_pred Cceeecccceeeccc-------ccceeEEeecccCCCCCCcccccCCCCCcCCCcccchhccCCCCCCccccccc-----
Confidence 5789999988 544 46899999999999999999999999999999999999999999998531111
Q ss_pred ccCCchhhhhhhhcCCCCCCCCCCceEEEEEecC
Q psy6008 86 QHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPG 119 (123)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sEDCL~LNV~~P~ 119 (123)
......||||||||||+|.
T Consensus 70 ---------------~~~~~~sEDCL~LNIwaP~ 88 (491)
T COG2272 70 ---------------GEDFTGSEDCLYLNIWAPE 88 (491)
T ss_pred ---------------cccCCccccceeEEeeccC
Confidence 0125789999999999998
No 2
>KOG4389|consensus
Probab=99.94 E-value=1.8e-27 Score=186.26 Aligned_cols=99 Identities=33% Similarity=0.469 Sum_probs=82.9
Q ss_pred CCCCeEEccccc--eEEecCCCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCcceecccCCCCCCCcCCCCCchhh
Q psy6008 6 KMGNTVSFSTGF--QIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTA 83 (123)
Q Consensus 6 ~~~~~V~t~~G~--G~~~~~~~~~~~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~~~~at~~~p~CpQ~~~~~~~~~~ 83 (123)
....+|+|..|. |....+. .+.|.+|+|||||+||+|++||++|+|.++|.|++|||+..+.|.|........+
T Consensus 29 ~~~~vv~t~~G~vRG~~~t~~---g~~V~aFlGIPfAePPvg~~RFkkP~p~~pW~g~ldAtt~a~~C~Q~~D~yfp~F- 104 (601)
T KOG4389|consen 29 DDDLVVQTKLGTVRGTELTFP---GKPVSAFLGIPFAEPPVGDLRFKKPEPKQPWSGVLDATTLANTCYQTRDTYFPGF- 104 (601)
T ss_pred ccceEEeccCCcccceEEecC---CceEEEEecCccCCCCCccccCCCCCcCCCccceecccccchhhhccccccCCCC-
Confidence 345789999998 8777655 4679999999999999999999999999999999999999999999764332211
Q ss_pred hhccCCchhhhhhhhcCCCCCCCCCCceEEEEEecC
Q psy6008 84 ALQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPG 119 (123)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNV~~P~ 119 (123)
.-+.|++..+..||||||||||+|+
T Consensus 105 -----------~GsEMWNpNt~lSEDCLYlNVW~P~ 129 (601)
T KOG4389|consen 105 -----------WGSEMWNPNTELSEDCLYLNVWAPA 129 (601)
T ss_pred -----------CcccccCCCCCcChhceEEEEeccC
Confidence 1245777788999999999999994
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.94 E-value=8.5e-28 Score=190.65 Aligned_cols=98 Identities=42% Similarity=0.697 Sum_probs=63.1
Q ss_pred CCCCeEEccccc--eEEecCCCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCcceecccCCCCCCCcCCCCCchhh
Q psy6008 6 KMGNTVSFSTGF--QIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTA 83 (123)
Q Consensus 6 ~~~~~V~t~~G~--G~~~~~~~~~~~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~~~~at~~~p~CpQ~~~~~~~~~~ 83 (123)
...++|+|.+|. |......+ ...|.+|+|||||+||+|++||++|+++.+|+++++|+++++.|||.........
T Consensus 21 ~~~~~v~~~~g~i~G~~~~~~~--~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~~~~~~~a~~~~~~C~Q~~~~~~~~~- 97 (535)
T PF00135_consen 21 ASSPVVTTSYGKIRGIRVNTDD--GKGVYSFLGIPYAQPPVGELRFRPPQPPPPWSGVRDATKYGPACPQPPPPGPSPG- 97 (535)
T ss_dssp STCCEEEETTEEEEEEEEEEST--CCEEEEEEEEESSE---GGGTTS--EB--S-SSEEETBS---BESCECTTSSHHH-
T ss_pred CCCCEEEECCeEEEeEEEecCC--CcceEEEeCcccCCCCCCCcccccccccccchhhhhhhhcccccccccccccccc-
Confidence 456799999999 76554432 1579999999999999999999999999999999999999999999864321000
Q ss_pred hhccCCchhhhhhhhcCCCCCCCCCCceEEEEEecCCCC
Q psy6008 84 ALQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQ 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNV~~P~~~~ 122 (123)
......++|||||||||+|+.+.
T Consensus 98 ----------------~~~~~~~sEDCL~LnI~~P~~~~ 120 (535)
T PF00135_consen 98 ----------------FNPPVGQSEDCLYLNIYTPSNAS 120 (535)
T ss_dssp ----------------CSHSSHBES---EEEEEEETSSS
T ss_pred ----------------cccccCCCchHHHHhhhhccccc
Confidence 00012369999999999998653
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.93 E-value=6.9e-26 Score=179.76 Aligned_cols=86 Identities=35% Similarity=0.468 Sum_probs=69.7
Q ss_pred eEEccccc--eEEecCCCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCcceecccCCCCCCCcCCCCCchhhhhcc
Q psy6008 10 TVSFSTGF--QIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQH 87 (123)
Q Consensus 10 ~V~t~~G~--G~~~~~~~~~~~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~~~~at~~~p~CpQ~~~~~~~~~~~~~~ 87 (123)
+|+|.+|. |... .+|+.|+|||||+||+|++||++|+++.+|+++++|+++++.|||........
T Consensus 1 ~v~t~~G~v~G~~~-------~~~~~F~GIPYA~pP~g~~Rf~~p~~~~~w~~~~~a~~~g~~c~Q~~~~~~~~------ 67 (493)
T cd00312 1 LVVTPNGKVRGVDE-------GGVYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYPPSCMQWDQLGGGL------ 67 (493)
T ss_pred CEEeCCceEEeEEe-------CCEEEEeccccCCCCCccccCCCCCCCCCCcCceeccccCCCCccCCcccccc------
Confidence 57888888 6543 37999999999999999999999999999999999999999999974321100
Q ss_pred CCchhhhhhhhcCCCCCCCCCCceEEEEEecCC
Q psy6008 88 MPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGS 120 (123)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~sEDCL~LNV~~P~~ 120 (123)
......++||||+||||+|..
T Consensus 68 ------------~~~~~~~sEdcl~l~i~~p~~ 88 (493)
T cd00312 68 ------------WNAKLPGSEDCLYLNVYTPKN 88 (493)
T ss_pred ------------ccCCCCCCCcCCeEEEEeCCC
Confidence 001245799999999999974
No 5
>KOG1516|consensus
Probab=99.90 E-value=3.8e-24 Score=171.79 Aligned_cols=92 Identities=38% Similarity=0.619 Sum_probs=76.3
Q ss_pred CCCeEEccccc--eEEecCCCCCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCcceecccCCCCCCCcCCCCCchhhh
Q psy6008 7 MGNTVSFSTGF--QIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAA 84 (123)
Q Consensus 7 ~~~~V~t~~G~--G~~~~~~~~~~~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~~~~at~~~p~CpQ~~~~~~~~~~~ 84 (123)
..++|.|..|+ |....... +..+..|+|||||+||+|++||++|+++.+|++++||+++++.|+|........
T Consensus 14 ~~~~~~t~~G~i~G~~~~~~~--~~~~~~F~gIpya~PP~G~lRF~~P~p~~~W~gv~~at~~~~~C~q~~~~~~~~--- 88 (545)
T KOG1516|consen 14 SPPVVGTPYGKIRGKTVSSTY--DVDVDRFLGIPYAKPPVGELRFRKPQPPEPWTGVLDATKYGPACPQNDELTGQN--- 88 (545)
T ss_pred CCceEecccceEeeeEeeccC--CceeEEEcccccCCCCCccccCCCCCCCCCCccccccccCCCCCCCcccccccc---
Confidence 46899999999 77765422 267999999999999999999999999999999999999999999975322110
Q ss_pred hccCCchhhhhhhhcCCCCCCCCCCceEEEEEecCCC
Q psy6008 85 LQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSA 121 (123)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNV~~P~~~ 121 (123)
...++|||||||||+|...
T Consensus 89 ------------------~~~~sEDCLylNV~tp~~~ 107 (545)
T KOG1516|consen 89 ------------------RVFGSEDCLYLNVYTPQGC 107 (545)
T ss_pred ------------------CCCCcCCCceEEEeccCCC
Confidence 2568999999999999753
No 6
>PF04596 Pox_F15: Poxvirus protein F15; InterPro: IPR007675 Protein F15 is found in a number of Poxviruses.
Probab=42.69 E-value=22 Score=24.01 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=13.6
Q ss_pred CCCCCCceEEEEEecCC
Q psy6008 104 GNYSEDCLHLNIYVPGS 120 (123)
Q Consensus 104 ~~~sEDCL~LNV~~P~~ 120 (123)
...+||-|++||+.|.-
T Consensus 97 ~~~~~~~LninIFiPT~ 113 (136)
T PF04596_consen 97 DKGNENSLNINIFIPTL 113 (136)
T ss_pred cCCCCCceEEEEEeecc
Confidence 34567999999999963
No 7
>PHA02993 hypothetical protein; Provisional
Probab=34.12 E-value=32 Score=23.50 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=12.4
Q ss_pred CCCCceEEEEEecCC
Q psy6008 106 YSEDCLHLNIYVPGS 120 (123)
Q Consensus 106 ~sEDCL~LNV~~P~~ 120 (123)
.++|-|++||+.|.-
T Consensus 110 ~~~~~LniniFiPT~ 124 (147)
T PHA02993 110 GDDDSLNINIFIPTI 124 (147)
T ss_pred CCCCceEEEEEEecc
Confidence 356899999999963
No 8
>KOG3672|consensus
Probab=25.64 E-value=22 Score=28.63 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=23.0
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCc
Q psy6008 29 EPVEAFLGVPYAAPPVGQLRYAPANPPLNWTG 60 (123)
Q Consensus 29 ~~v~~F~GIPYA~~P~g~~Rf~~P~~~~~~~~ 60 (123)
..+..-||||+|.+| ||+.....+.|+.
T Consensus 391 ~p~l~~Lg~~~a~~p----~y~~r~vfe~y~~ 418 (487)
T KOG3672|consen 391 GPILRVLGIPFADPP----HYTSRIVFEIYEH 418 (487)
T ss_pred hHHHHHhCCCcCCCc----chhhhhhHHhhhc
Confidence 445667899999999 9999988888754
No 9
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=20.95 E-value=18 Score=21.13 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=9.9
Q ss_pred CCceeeeccccCCCCC
Q psy6008 28 LEPVEAFLGVPYAAPP 43 (123)
Q Consensus 28 ~~~v~~F~GIPYA~~P 43 (123)
...|..+||+||..|-
T Consensus 45 E~dif~~Lgl~yipPe 60 (64)
T PF14791_consen 45 EEDIFDALGLPYIPPE 60 (64)
T ss_dssp HHHHHHHTTS----GG
T ss_pred HHHHHHHcCCCCCChh
Confidence 4679999999999875
No 10
>KOG2964|consensus
Probab=18.94 E-value=90 Score=24.36 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=17.5
Q ss_pred CceeeeccccCCCCCC---CCCCCCCCCC
Q psy6008 29 EPVEAFLGVPYAAPPV---GQLRYAPANP 54 (123)
Q Consensus 29 ~~v~~F~GIPYA~~P~---g~~Rf~~P~~ 54 (123)
+--.+|+|+|+..... |. ||.++.-
T Consensus 71 ~~d~AfiGvPldtgtS~rpGa-rFgP~~I 98 (361)
T KOG2964|consen 71 DFDIAFIGVPLDTGTSYRPGA-RFGPSRI 98 (361)
T ss_pred ccceEEeccccCCCccCCCcc-ccCCchh
Confidence 3346899999987543 32 8888754
Done!