RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6008
(123 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 86.2 bits (214), Expect = 7e-21
Identities = 36/89 (40%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
PV AFLG+PYA PPVG+LR+ PP WTG A GP CPQ
Sbjct: 21 PVYAFLGIPYAKPPVGELRFKKPQPPEPWTGVLDATKYGPACPQ---------------- 64
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
M SEDCL+LN+Y P
Sbjct: 65 --NNDLGSEMWNKNTGMSEDCLYLNVYTP 91
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 75.4 bits (186), Expect = 4e-17
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
V +FLG+PYA PPVG LR+ P W+ A + P C Q
Sbjct: 16 GVYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYPPSCMQ---------------W 60
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
L + SEDCL+LN+Y P
Sbjct: 61 DQLGGGLWNAKLPG---SEDCLYLNVYTP 86
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 73.2 bits (180), Expect = 2e-16
Identities = 36/88 (40%), Positives = 44/88 (50%), Gaps = 20/88 (22%)
Query: 31 VEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMPV 90
V ++LG+PYAAPPVG+LR+ PP W+G R A GP CPQ F M
Sbjct: 20 VHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFGPACPQPFNR----------MGS 69
Query: 91 GRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
G SEDCL+LNI+ P
Sbjct: 70 GED----------FTGSEDCLYLNIWAP 87
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 30.7 bits (69), Expect = 0.14
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 2 YIQEKMGNTVSFSTGFQIILEPNSRHLEPVEAFLGVPYAAP 42
+ +E + +V FS+ + I+ N+ LE +AF+G YA P
Sbjct: 288 FTEETVPYSVCFSSDYSIV---NASVLEADDAFVGFSYAPP 325
>gnl|CDD|236817 PRK11001, mtlR, mannitol repressor protein; Provisional.
Length = 171
Score = 29.1 bits (66), Expect = 0.43
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 62 RLADALGPVCPQKFPDLSNKTAALQHMPVGRYQQLLR 98
AL P P +FP + ++L M + RYQQ++R
Sbjct: 117 HCVAALPP--PLEFPQPDDADSSLYQMQLQRYQQVVR 151
>gnl|CDD|151157 pfam10643, Cytochrome-c551, Photosystem P840 reaction-centre
cytochrome c-551. A photosynthetic reaction-centre
complex is found in certain green sulphur bacteria such
as Chlorobium vibrioforme which are anaerobic
photo-auto-trophic organisms. The primary electron
donor is P840, a probable B-Chl a dimer, and the
primary electron acceptor is a B-Chl monomer. Also on
the donor side c-type cytochromes are known to function
as electron donors to photo-oxidized P840. This family
is thus the secondary endogenous donor of the
photosynthetic reaction-centre complex and is a
membrane-bound cytochrome containing a single haem
group.
Length = 213
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 11 VSFSTGFQIILEPNSRHLEPVEAFLG 36
VSF TG+++ E S L P+ +F+G
Sbjct: 27 VSFLTGYKVPAENISPVLTPLRSFMG 52
>gnl|CDD|181407 PRK08383, PRK08383, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 168
Score = 25.9 bits (57), Expect = 5.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 VSFSTGFQIILEPNSRHLEPVEAFLGVPYAAPP 43
V ++T II E +R L P+ L + YA P
Sbjct: 41 VGYATR-NIIGEKATRFLNPIRWLLFIAYAFGP 72
>gnl|CDD|238936 cd01977, Nitrogenase_VFe_alpha, Nitrogenase_VFe_alpha -like:
Nitrogenase VFe protein, alpha subunit like. This group
contains proteins similar to the alpha subunits of, the
VFe protein of the vanadium-dependent (V-) nitrogenase
and the FeFe protein of the iron only (Fe-) nitrogenase
Nitrogenase catalyzes the ATP-dependent reduction of
dinitrogen (N2) to ammonia. In addition to V- and Fe-
nitrogenases there is a molybdenum (Mo)-dependent
nitrogenase which is the most widespread and best
characterized of these systems. These systems consist
of component 1 (VFe protein, FeFe protein or, MoFe
protein respectively) and, component 2 (Fe protein).
MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases
are alpha2beta2delta2 hexamers. The alpha and beta
subunits of VFe and FeFe are similar to the alpha and
beta subunits of MoFe. For MoFe each alphabeta pair
contains one P-cluster (at the alphabeta interface) and,
one molecule of iron molybdenum cofactor (FeMoco)
contained within the alpha subunit. The Fe protein which
has a practically identical structure in all three
systems, it contains a single [4Fe-4S] cluster.
Electrons are transferred from the [4Fe-4S] cluster of
the Fe protein to the P-cluster of the MoFe and in turn
to FeMoCo, the site of substrate reduction. The
V-nitrogenase requires an iron-vanadium cofactor
(FeVco), the iron only-nitrogenase an iron only cofactor
(FeFeco). These cofactors are analogous to the FeMoco.
The V-nitrogenase has P clusters identical to those of
MoFe. In addition to N2, nitrogenase also catalyzes the
reduction of a variety of other substrates such as
acetylene The V-nitrogenase differs from the
Mo-nitrogenase in that it produces free hydrazine, as a
minor product during dinitrogen reduction and, ethane
as a minor product during acetylene reduction.
Length = 415
Score = 26.2 bits (58), Expect = 5.4
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 22 EPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLA 64
E + L + AF G+ A V A P L+W RL
Sbjct: 245 EYCAESLRKIGAFFGIEDRAEAVIAEEMAKWKPELDWYKERLK 287
>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 25.7 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 46 QLRYAPANPP--LNWTGTRLADALGPVCPQK 74
RY+ N P W RLA AL P+ Q
Sbjct: 286 AGRYSFGNQPEIAFWNLQRLAGALSPLIDQA 316
>gnl|CDD|130920 TIGR01861, ANFD, nitrogenase iron-iron protein, alpha chain. This
model represents the all-iron variant of the nitrogenase
component I alpha chain. Molybdenum-iron and vanadium
iron forms are also found. The complete complex contains
two alpha chains, two beta chains and two delta chains.
The component I associates with component II also known
as the iron protein which serves to provide electrons
for component I [Central intermediary metabolism,
Nitrogen fixation].
Length = 513
Score = 25.7 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 21 LEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRL 63
EP + L V F G+ A + A P L+W RL
Sbjct: 284 FEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERL 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.429
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,371,816
Number of extensions: 554412
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 15
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)