RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6008
(123 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 113 bits (285), Expect = 7e-31
Identities = 45/100 (45%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 19 IILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDL 78
I E N+ L PV FLGVPYAAPP G+ R+ P PP W+ R A PVCPQ D
Sbjct: 23 IKKELNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQFAPVCPQNIIDG 82
Query: 79 SNKTAALQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
+PV L + Y+ + SEDCL+LNIYVP
Sbjct: 83 RLPEVM---LPVWFTNNLDVVSSYVQDQSEDCLYLNIYVP 119
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 102 bits (257), Expect = 5e-27
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
+ AFLG+P+A PPVG +R+ P W+G A C Q +
Sbjct: 26 HISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFP--------- 76
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
M SEDCL+LNI+VP
Sbjct: 77 ---GFSGSEMWNPNREMSEDCLYLNIWVP 102
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 102 bits (257), Expect = 6e-27
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
PV AFLG+P+A PPVG R+ P P W+G A VC Q L
Sbjct: 28 PVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEG----- 82
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
M SEDCL+LN++ P
Sbjct: 83 -------TEMWNPNRELSEDCLYLNVWTP 104
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 101 bits (254), Expect = 1e-26
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
V AFLG+PYA PP+G+LR+ W+ A C Q
Sbjct: 24 TVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANSCCQNIDQSFPG-------- 75
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
M + SEDCL+LN+++P
Sbjct: 76 ----FHGSEMWNPNTDLSEDCLYLNVWIP 100
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 101 bits (253), Expect = 2e-26
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFP-----DLSNKTAA 84
V+ F G+P+A PP+ LR+ P A+ P C Q P L
Sbjct: 20 KVDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGL 79
Query: 85 LQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQ 122
+ +P L M + +EDCL+LN++ P +
Sbjct: 80 AKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTK 117
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 100 bits (251), Expect = 3e-26
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 25 SRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAA 84
+PV FLG+P+A PP+G LR+ P P W+ + A + P+C Q
Sbjct: 23 EGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNATSYPPMCTQD---------- 72
Query: 85 LQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQ 122
+ + R E SEDCL+LNIY P
Sbjct: 73 PKAGQLLSELFTNRKENIPLKLSEDCLYLNIYTPADLT 110
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 100 bits (251), Expect = 4e-26
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
EAFLG+P+A PPVG LR+ P + + GP C Q+ P+ + + +
Sbjct: 19 INEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGK--T 76
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQ 122
++ + SEDCL +N+ P +
Sbjct: 77 ALDLVMQSKVFQAVLPQSEDCLTINVVRPPGTK 109
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 98.7 bits (246), Expect = 2e-25
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
V + G+PYA PPV LR+ P W G A L C Q+
Sbjct: 25 EVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLSATCVQE------------RYE 72
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQL 123
+ N SEDCL++N++ P A+L
Sbjct: 73 YFPGFSGEEIWNPNTNVSEDCLYINVWAPAKARL 106
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 95.4 bits (238), Expect = 2e-24
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 26 RHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAAL 85
V + G+PYA PPVGQ R+ PP W A A GP+CPQ LS L
Sbjct: 16 TTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGPICPQPSDLLSLSYTEL 75
Query: 86 QHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSA 121
SEDCL++N++ P +
Sbjct: 76 PRQ------------------SEDCLYVNVFAPDTP 93
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 95.0 bits (237), Expect = 2e-24
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 29 EPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHM 88
E V + G+PYA PVG+ R+ P PP W G R A + GPV Q + +
Sbjct: 19 EGVFVWKGIPYAKAPVGERRFLPPEPPDAWDGVREATSFGPVVMQPSDPIFS-------- 70
Query: 89 PVGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSA 121
+ SED L+LNI+ P +
Sbjct: 71 --------GLLGRMSEAPSEDGLYLNIWSPAAD 95
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 94.7 bits (236), Expect = 3e-24
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 23/93 (24%)
Query: 30 PVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHMP 89
V+ FLG+ YA+PP+G LR+ P + A GP+C + S
Sbjct: 28 GVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESP--------- 78
Query: 90 VGRYQQLLRMEPYLGNYSEDCLHLNIYVPGSAQ 122
G+ SEDCL +N++ P +A
Sbjct: 79 --------------GDISEDCLFINVFKPSTAT 97
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 91.3 bits (227), Expect = 7e-23
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 29 EPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLSNKTAALQHM 88
+ +F GVPYA P+G+LR+ P W A GPVC Q +
Sbjct: 28 KSYASFRGVPYAKQPLGELRFKELQPLEPWQDELDATQEGPVCQQT------------DV 75
Query: 89 PVGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
GR + M SE C+H NI+VP
Sbjct: 76 LYGRIMRPRGM-------SEACIHANIHVP 98
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 82.8 bits (205), Expect = 7e-20
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 26/99 (26%)
Query: 20 ILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLNWTGTRLADALGPVCPQKFPDLS 79
+ + S + V+ F G+P+AA P W GT A + C Q
Sbjct: 16 VNKKLSLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSFKKRCLQA----- 67
Query: 80 NKTAALQHMPVGRYQQLLRMEPYLGNYSEDCLHLNIYVP 118
+ +EDCL+LNI+VP
Sbjct: 68 ------------------TLTQDSTYGNEDCLYLNIWVP 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.21
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 10/28 (35%)
Query: 94 QQLLRMEPYLGNYSEDCLHLNIYVPGSA 121
Q L +++ L +Y SA
Sbjct: 20 QALKKLQA----------SLKLYADDSA 37
Score = 24.9 bits (53), Expect = 6.5
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 4/19 (21%)
Query: 45 GQLR-YAPANPP---LNWT 59
L+ YA + P + T
Sbjct: 27 ASLKLYADDSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.28
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 12/45 (26%)
Query: 13 FSTGFQIILEPNSRHLEPVEAFLGVPYAAPPVGQLRYAPANPPLN 57
F+ G I+ +L P P L P + PL
Sbjct: 209 FTQGLNIL------------EWLENPSNTPDKDYLLSIPISCPLI 241
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1);
DNA adenine methyltransferase, methylase; HET: SAM;
1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Length = 284
Score = 27.3 bits (61), Expect = 1.3
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 46 QLRYAPANPPLNWTG--TRLADALGPVCPQKF 75
+++ P WTG +L + + P+ +
Sbjct: 5 EIKKVTLQPFTKWTGGKRQLLPVIRELIPKTY 36
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 25.9 bits (58), Expect = 3.7
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 90 VGRYQQLLRMEPYLGNY 106
+Y +LL +E Y
Sbjct: 396 TAKYNRLLEIEFESDEY 412
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.429
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,882,344
Number of extensions: 99629
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 24
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)