Query psy6009
Match_columns 866
No_of_seqs 163 out of 184
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01602 Adaptin_N: Adaptin N 80.0 86 0.0019 36.9 18.4 104 442-545 413-518 (526)
2 PF10508 Proteasom_PSMB: Prote 79.2 1.5E+02 0.0032 35.5 22.4 168 322-511 53-232 (503)
3 KOG4199|consensus 68.2 1.2E+02 0.0026 34.6 14.1 197 325-545 122-353 (461)
4 PF12717 Cnd1: non-SMC mitotic 53.0 1.3E+02 0.0028 30.6 10.7 89 456-551 1-92 (178)
5 PF09324 DUF1981: Domain of un 48.4 36 0.00077 30.8 5.1 57 87-148 14-70 (86)
6 cd07920 Pumilio Pumilio-family 46.9 3.9E+02 0.0085 29.3 14.1 21 470-490 136-156 (322)
7 KOG3682|consensus 46.6 6.8E+02 0.015 31.3 25.9 187 96-299 172-392 (930)
8 PF10165 Ric8: Guanine nucleot 44.2 1.9E+02 0.0041 34.2 11.5 121 502-644 2-138 (446)
9 PF10508 Proteasom_PSMB: Prote 41.3 7E+02 0.015 29.9 17.0 83 352-473 338-421 (503)
10 PF04533 Herpes_U44: Herpes vi 38.7 1.5E+02 0.0032 31.5 8.3 87 394-488 48-139 (210)
11 PF13512 TPR_18: Tetratricopep 34.4 3.7E+02 0.008 26.9 10.1 122 302-434 4-125 (142)
12 PF01602 Adaptin_N: Adaptin N 32.6 8.7E+02 0.019 28.4 20.2 178 348-594 264-442 (526)
13 PTZ00429 beta-adaptin; Provisi 30.6 1.2E+03 0.027 29.6 20.9 85 460-552 350-434 (746)
14 PF11841 DUF3361: Domain of un 29.3 3.6E+02 0.0078 27.6 9.2 115 517-641 8-129 (160)
15 cd07313 terB_like_2 tellurium 28.0 4.1E+02 0.0088 24.1 8.8 80 461-547 22-101 (104)
16 PF05918 API5: Apoptosis inhib 27.4 1.2E+03 0.026 28.5 16.1 72 421-510 91-162 (556)
17 COG1084 Predicted GTPase [Gene 26.9 6.5E+02 0.014 28.8 11.4 119 723-865 59-213 (346)
18 PF05804 KAP: Kinesin-associat 25.7 1.4E+03 0.031 28.8 22.5 34 345-378 284-317 (708)
19 PF08767 CRM1_C: CRM1 C termin 24.5 1E+03 0.022 26.7 16.5 125 353-489 167-296 (319)
20 KOG2137|consensus 22.9 6.6E+02 0.014 31.4 11.3 131 418-550 405-538 (700)
21 PF04826 Arm_2: Armadillo-like 22.6 1E+03 0.022 25.9 13.5 112 437-548 6-121 (254)
22 KOG2753|consensus 22.3 1.1E+03 0.024 27.0 12.0 42 554-597 157-198 (378)
23 KOG1077|consensus 21.0 1.3E+03 0.028 29.2 13.0 71 482-552 261-340 (938)
24 PF14868 DUF4487: Domain of un 20.6 7E+02 0.015 30.6 11.0 103 445-547 436-548 (559)
25 PF06648 DUF1160: Protein of u 20.2 4.1E+02 0.0088 26.0 7.2 62 398-488 20-82 (122)
26 PF02953 zf-Tim10_DDP: Tim10/D 20.1 1.9E+02 0.0042 24.5 4.6 45 82-126 11-55 (66)
No 1
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.01 E-value=86 Score=36.91 Aligned_cols=104 Identities=10% Similarity=0.120 Sum_probs=75.9
Q ss_pred hhhHHHHHHH-hccCchHHHHHHHHHHHHHhcccCh-hhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhH
Q psy6009 442 LGDLDAVWAA-QAGKHDAIVKNVHELLAKLAWDFSP-VQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMAD 519 (866)
Q Consensus 442 ~~~ld~IW~a-~~~Khe~i~~~I~~lL~~la~~l~~-eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~ 519 (866)
..-+..+++. ..-+++.+..++.-++++.+..... +....++..+...+...++..+..++..+-++........+..
T Consensus 413 ~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~ 492 (526)
T PF01602_consen 413 EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN 492 (526)
T ss_dssp HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH
Confidence 3345555553 3357888888899999988887765 3555566666666666667788888998888887776656666
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHH
Q psy6009 520 KVLNLFWSLAHSDDVMTDIMEQALAS 545 (866)
Q Consensus 520 k~L~LlW~L~~~~~~~~el~~~Al~~ 545 (866)
.+++.+-.+....+..+|++|.|...
T Consensus 493 ~i~~~~~~~~~~~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 493 EILQFLLSLATEDSSDPEVRDRAREY 518 (526)
T ss_dssp HHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 88888888888888889999988754
No 2
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.17 E-value=1.5e+02 Score=35.50 Aligned_cols=168 Identities=20% Similarity=0.168 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHH
Q psy6009 322 DAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMA 401 (866)
Q Consensus 322 d~~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~ 401 (866)
|.+..+...|+.++...... + +..--..++.+.++++.=.-|..++++|...+.. .+..+
T Consensus 53 e~v~~~~~iL~~~l~~~~~~-~----l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---------------~~~~~ 112 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPD-S----LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH---------------SEGAA 112 (503)
T ss_pred HHHHHHHHHHHHHHhccCHH-H----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---------------CHHHH
Confidence 33555555556666544322 1 2344458889999999999999999998666543 24578
Q ss_pred HHHHhchhHHHHhcC--CCChHHHHHHHHHHHHHHHhccCCCh-----hhHHHHHHHhccCchHHHHHHHHHHHHHhccc
Q psy6009 402 KWIKDNNVLEIVLRD--SLHQPQYVEKLEKILRFLIKEKALSL-----GDLDAVWAAQAGKHDAIVKNVHELLAKLAWDF 474 (866)
Q Consensus 402 ~WL~en~Ile~llg~--nlHq~E~i~rs~~Il~FL~~~~~lt~-----~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l 474 (866)
+++.+++++..+..- .-. .++.+.+.+++.=|+.....-. .-+..+.+.....++.++-.+|+++..++. .
T Consensus 113 ~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-~ 190 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-H 190 (503)
T ss_pred HHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-c
Confidence 899999999886543 334 7889999999999986543322 225677887766688999999999999864 3
Q ss_pred ChhhHHH-----HHHHHHhcccccCHHhhHHHHHHHHHHHHh
Q psy6009 475 SPVQLDH-----LFVCFQASWTSANRKQTEKLLELIRRLAED 511 (866)
Q Consensus 475 ~~eqL~~-----Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~ 511 (866)
+++.+.. +++++-+.-.+...-.+...++++..+|+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 4444433 344444433333334578889999999984
No 3
>KOG4199|consensus
Probab=68.17 E-value=1.2e+02 Score=34.59 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHh--ccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHH
Q psy6009 325 SVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLL--QISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAK 402 (866)
Q Consensus 325 ~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrll--kss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~ 402 (866)
+-+.|+|..|.+-.-+|+++ ++--.+.+.++++ +++.=+.-..|+.=+.+-|-.- +.-.+
T Consensus 122 ~~l~ksL~al~~lt~~qpdl---~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h---------------E~nrQ 183 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHKQPDL---FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH---------------EVNRQ 183 (461)
T ss_pred hHHHHHHHHHHHhhcCCcch---hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh---------------HHHHH
Confidence 44567777777767778776 5666777787775 4556666677777665554431 22234
Q ss_pred HHHhchhHHHHhcC---CCChHHHHHHHHHHHHHHHhccCCChhhHHHHHHHhccCchHHH-HHHHHHHHHHhc-ccChh
Q psy6009 403 WIKDNNVLEIVLRD---SLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIV-KNVHELLAKLAW-DFSPV 477 (866)
Q Consensus 403 WL~en~Ile~llg~---nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~-~~I~~lL~~la~-~l~~e 477 (866)
-+.+-+|++.++|. .-| ...|+.....++|| ++.|++.-...-..+---+++ .++...|.+..+ ..+++
T Consensus 184 ~~m~~~il~Li~~~l~~~gk-~~~VRel~~a~r~l-----~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 184 LFMELKILELILQVLNREGK-TRTVRELYDAIRAL-----LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHHhhHHHHHHHHHcccCc-cHHHHHHHHHHHHh-----cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 46677888887754 345 38999999999999 466666555543333222222 233444444444 44555
Q ss_pred hHHHHHHHHHhccc--------------------------ccCHHhhHHHHHHHHHHHHhccC-Cc-hhHHHHHHHHhhh
Q psy6009 478 QLDHLFVCFQASWT--------------------------SANRKQTEKLLELIRRLAEDDKD-GV-MADKVLNLFWSLA 529 (866)
Q Consensus 478 qL~~Lf~~~~~~~~--------------------------~~s~~~r~~ll~lI~~la~~~~~-~~-~~~k~L~LlW~L~ 529 (866)
-|-.|+--+.+.-. ....+--..++.+++.+|.+|.. .. ....+++.+-.++
T Consensus 258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence 55544444433321 11122234455666666654421 11 1223455555555
Q ss_pred cCCCCChHHHHHHHHH
Q psy6009 530 HSDDVMTDIMEQALAS 545 (866)
Q Consensus 530 ~~~~~~~el~~~Al~~ 545 (866)
.....+|-++++++..
T Consensus 338 ~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHcCCChHHHHHHHHH
Confidence 5445555555555544
No 4
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=52.97 E-value=1.3e+02 Score=30.60 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHHhcccCh---hhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhHHHHHHHHhhhcCC
Q psy6009 456 HDAIVKNVHELLAKLAWDFSP---VQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSD 532 (866)
Q Consensus 456 he~i~~~I~~lL~~la~~l~~---eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~k~L~LlW~L~~~~ 532 (866)
|+.++.|+.-.+++++..++. ..+.+++.+++ +.++..|...+..+.+|...+--..-.+-...++ .++ .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~----D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l--~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLR----DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLL--V 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHH--c
Confidence 788999999999999998874 45555665555 5578899999999999987763211111112222 222 5
Q ss_pred CCChHHHHHHHHHHHHHhh
Q psy6009 533 DVMTDIMEQALASHLKILD 551 (866)
Q Consensus 533 ~~~~el~~~Al~~~~~iL~ 551 (866)
|-.+++.+.|...+.+++.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLK 92 (178)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6678899989888888775
No 5
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=48.42 E-value=36 Score=30.82 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=46.4
Q ss_pred HhhhhhhHHHHHhcchhhhhcCChhhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhCC
Q psy6009 87 FFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNP 148 (866)
Q Consensus 87 f~~~~l~~~f~kil~~~av~~w~~~i~~~I~~~~~~~i~l~~~~l~~d~~~ll~~L~~~fn~ 148 (866)
|=++.|-+ |.-|+.. +=+.++++.|..|+..+++-...+++.+|.+++++|+.+-+.
T Consensus 14 fQ~~fL~P-f~~i~~~----~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~ 70 (86)
T PF09324_consen 14 FQKDFLKP-FEYIMSN----NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD 70 (86)
T ss_pred HHHHHHHH-HHHHHhc----cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC
Confidence 33444544 7777732 457799999999999999999999999999999999998853
No 6
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=46.87 E-value=3.9e+02 Score=29.30 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=11.2
Q ss_pred HhcccChhhHHHHHHHHHhcc
Q psy6009 470 LAWDFSPVQLDHLFVCFQASW 490 (866)
Q Consensus 470 la~~l~~eqL~~Lf~~~~~~~ 490 (866)
+...+++++...+++.+...+
T Consensus 136 ~l~~~~~~~~~~i~~~l~~~~ 156 (322)
T cd07920 136 CIEKFPPEDLQFIIDAFKGNC 156 (322)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 334445666666665555443
No 7
>KOG3682|consensus
Probab=46.57 E-value=6.8e+02 Score=31.25 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred HHHhcchhhhhcCChhhHHHHHHHHHHHHHHHHHHhcCCc-----------hh------HHHHHHHhhCCCCcccccCCC
Q psy6009 96 FTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDV-----------FP------LLDILTMVFNPCNKFHTFNSN 158 (866)
Q Consensus 96 f~kil~~~av~~w~~~i~~~I~~~~~~~i~l~~~~l~~d~-----------~~------ll~~L~~~fn~~~~fh~~~~~ 158 (866)
.+|||.|.-|-.+-+.-.--|.+++.-+..++.+|.++-. .| +=+.|.-+|-|...|-.+--
T Consensus 172 ~~kLl~dt~v~~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~~~~~~~~l~~~~~lit~f~~e~~~esfk~- 250 (930)
T KOG3682|consen 172 SFKLLLDTFVAWFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNVKKASQRFLILRENLITAFGREDRVESFKI- 250 (930)
T ss_pred hhhhccchhHHhhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhhhhhcChhhhhhHHHH-
Confidence 4455555555555554445555666666667777666211 11 11244445544443322210
Q ss_pred CCccccCCCCCCCcccccccccccccchhhHHHH-HHHHHhhc--chHHHHHHHHh---CCCCCCHHHHHH--HHhhhhh
Q psy6009 159 QQSISVPVNSNIADDEIFARPIDYYKNQRGWLVD-LINLFGSM--GGFQILLERFQ---NKSTLTIPVIFA--LIRPFGQ 230 (866)
Q Consensus 159 r~~~~~~~~~~~~~~~~fa~~~~~~~~~~~~l~~-~in~Fg~~--gGF~~il~~~~---~~~~~~~~~i~~--~l~~~~~ 230 (866)
.+. +++-.+.+||-..-.|+.||.. .+.+||-+ .|=.--+.|+. .++.-|+....| ++--+++
T Consensus 251 -~c~--------~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~rg~~dPlvs~yar~y~~~~~~ 321 (930)
T KOG3682|consen 251 -VCE--------SANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFRGEQDPLVSDYARNYFLKLSE 321 (930)
T ss_pred -HHh--------ChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Confidence 000 2233566776555777766543 34555533 12222233331 122333332222 2111111
Q ss_pred -----hhhhcChHH--HHhhhhHHHHHHHHHHhcCChHHHHHHhhhhccchhHH--HHHHHHhhhhhcCCCCCCccch
Q psy6009 231 -----VHEYLTLPT--ILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAIS--VIIKSCKLLAARVPHQEDTEIV 299 (866)
Q Consensus 231 -----~~~~L~~~~--i~~y~~p~~~~v~~~l~~l~d~eLk~~~~~~~~~d~~~--~i~~~~~~l~~~~~~~~d~~~~ 299 (866)
.+.||...+ +..+|.|+---+..++.=+++.+.+... +++ +++..+.-|.+-.+-..-|+|.
T Consensus 322 ~i~~~~~~yL~k~~~d~l~~f~~~~~d~~e~~~i~~~~~~~~l~-------sL~~pa~~~i~~cl~~~~~~~~~~~~l 392 (930)
T KOG3682|consen 322 IIDIPIRFYLEKSMIDCLKFFDAANLDILERLAIMCSQFNDDLS-------SLFAPAHITIYSCLIDPLNRTPHWRVL 392 (930)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccchhhh-------hhccHHHHHHHHHhhccccccchHHHH
Confidence 233554443 4556777666666666666665555431 122 6677777777777666666655
No 8
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=44.23 E-value=1.9e+02 Score=34.19 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcc--CCchhHHHHHHHHhhh--------cCCCCChHHHHHHHHHHHHHhhccCccchhhHH----HHHHH
Q psy6009 502 LELIRRLAEDDK--DGVMADKVLNLFWSLA--------HSDDVMTDIMEQALASHLKILDYSCSQERDKQK----TIWLQ 567 (866)
Q Consensus 502 l~lI~~la~~~~--~~~~~~k~L~LlW~L~--------~~~~~~~el~~~Al~~~~~iL~~~~~~~~~~~k----~~yl~ 567 (866)
|+.+|-++++-. +.-.....+..|-.++ ......++...+|+.++++++-.+ ...++ ..+..
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s----~~aR~~~~~~~~~~ 77 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS----PSARQIFVDLGLAE 77 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC----HHHHHHHHHcCcHH
Confidence 455566665543 3445567888888888 223445788899999999999543 33332 25667
Q ss_pred HHHHHhhcCCCc-hhhhHH-HHHHHHHhhcCCCCCCCCCCCCccccCCcchHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy6009 568 TCIEEFKSNPKW-VVPALR-QIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQIS 644 (866)
Q Consensus 568 kCie~Ik~~~~s-vl~SLr-li~~I~~l~~~~~n~~~~~~r~~~~~~~~~~~~~I~~L~~~~~Lv~Llv~eL~~y~~~~ 644 (866)
++++-+++...+ +....+ +..+|+.+.. .........|.++|++++.+++.|+...+..
T Consensus 78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlT------------------a~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~ 138 (446)
T PF10165_consen 78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLT------------------ALRPDDRKKLIEEHHGVELLTEALERHLKVK 138 (446)
T ss_pred HHHHHHHcccccCCChhHHHHHHHHHHHHh------------------cCChhHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 788888876322 223333 3444544431 1245678899999999999999999999654
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=41.35 E-value=7e+02 Score=29.89 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHH
Q psy6009 352 RLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKIL 431 (866)
Q Consensus 352 ~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il 431 (866)
-|+.+...+++++.+.|+.+|.-+..++..-.. ... -++..-...++
T Consensus 338 ~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~----------~~~-----------------------~~i~~~~~~w~ 384 (503)
T PF10508_consen 338 VLKAIGDAIKSGSTELKLRALHALASILTSGTD----------RQD-----------------------NDILSITESWY 384 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC----------Cch-----------------------HHHHHHHHHHH
Confidence 366677788899999999999999887753211 001 12222223333
Q ss_pred HHHHhccCCChhhHH-HHHHHhccCchHHHHHHHHHHHHHhcc
Q psy6009 432 RFLIKEKALSLGDLD-AVWAAQAGKHDAIVKNVHELLAKLAWD 473 (866)
Q Consensus 432 ~FL~~~~~lt~~~ld-~IW~a~~~Khe~i~~~I~~lL~~la~~ 473 (866)
..+ +.+-++ .+++..+.-.+.++-+.|+++..++.+
T Consensus 385 ~~~------~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 385 ESL------SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHh------cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 333 222333 778877777799999999999998876
No 10
>PF04533 Herpes_U44: Herpes virus U44 protein; InterPro: IPR007619 This entry represents proteins from dsDNA beta-herpesvirinae and gamma-herpesvirinae viruses. The function is not known, and the proteins are named variously as U44, BSRF1, UL71, and M71. The entry also includes BSRF1.
Probab=38.66 E-value=1.5e+02 Score=31.50 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHhchhHH--HHhcCCCChHHHHHHHHHHHHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHh
Q psy6009 394 WLTPDRMAKWIKDNNVLE--IVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLA 471 (866)
Q Consensus 394 ~~~~~~l~~WL~en~Ile--~llg~nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la 471 (866)
-++...|...-.++.++. |||. .|.-.+..-+-||++.+ =.+|..-+=.++-.|-.+|.++|-.++.++|
T Consensus 48 GV~~gDl~~~~~d~e~l~q~~LLa-----lQ~n~~~~~L~Rf~~~~---cp~h~r~~ve~ei~Klk~I~~vi~n~mlkla 119 (210)
T PF04533_consen 48 GVTVGDLLQNERDTEVLKQAHLLA-----LQCNNITDYLKRFLSAK---CPPHCRPAVETEIQKLKRIQEVIWNTMLKLA 119 (210)
T ss_pred CCCHHHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHhhhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999 9998 79999999999999755 4688888889999999999999999999887
Q ss_pred c---ccChhhHHHHHHHHHh
Q psy6009 472 W---DFSPVQLDHLFVCFQA 488 (866)
Q Consensus 472 ~---~l~~eqL~~Lf~~~~~ 488 (866)
- -++.+.|..|.+||..
T Consensus 120 vGe~t~~d~~l~~LLdK~A~ 139 (210)
T PF04533_consen 120 VGEFTMDDDSLEALLDKFAT 139 (210)
T ss_pred hcceeecHHHHHHHHHHhhh
Confidence 5 5577888888888875
No 11
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=34.45 E-value=3.7e+02 Score=26.92 Aligned_cols=122 Identities=15% Similarity=0.192 Sum_probs=88.0
Q ss_pred hhhhhchHHHHHhhhhcchhhhHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhh
Q psy6009 302 ILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAG 381 (866)
Q Consensus 302 ~~~~~~~e~~~~~~~~~s~~d~~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~ 381 (866)
.+++.|++++=+++............++.+..|..|.|..+ ..+..+|+++--+++......=+.+.....++-..
T Consensus 4 ~~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 4 VVPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 46778899998888777777778999999999999998553 46788999999999999998666555555333222
Q ss_pred hcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHH
Q psy6009 382 VAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFL 434 (866)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL 434 (866)
+...+-..-..-|..+-...+.++-+|+...+ ++-++++-.=|+=|
T Consensus 80 ------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD-~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 80 ------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRD-PTPARQAFRDFEQL 125 (142)
T ss_pred ------CCCccHHHHHHHHHHHHHhhhHHhhhcccccC-cHHHHHHHHHHHHH
Confidence 11122223355667777777888888888888 77777766655554
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=32.58 E-value=8.7e+02 Score=28.44 Aligned_cols=178 Identities=21% Similarity=0.177 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHH
Q psy6009 348 LEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKL 427 (866)
Q Consensus 348 ~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs 427 (866)
+-..-.....+++.++.-+.|..||+.|..++..- +..+...
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------------------------------------~~~v~~~ 305 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--------------------------------------PPAVFNQ 305 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------------------------------------HHHHGTH
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--------------------------------------chhhhhh
Confidence 34455667788888888888888888886665541 2222222
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhH-HHHHHHHHhcccccCHHhhHHHHHHHH
Q psy6009 428 EKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQL-DHLFVCFQASWTSANRKQTEKLLELIR 506 (866)
Q Consensus 428 ~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL-~~Lf~~~~~~~~~~s~~~r~~ll~lI~ 506 (866)
.-++-++ ....+..|+....++|..++..=+.+.+ ..|...+... .+..++..++.-|+
T Consensus 306 ~~~~~~l-----------------~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~---~d~~~~~~~i~~I~ 365 (526)
T PF01602_consen 306 SLILFFL-----------------LYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSEL---SDPDFRRELIKAIG 365 (526)
T ss_dssp HHHHHHH-----------------HCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHH
T ss_pred hhhhhee-----------------cCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhc---cchhhhhhHHHHHH
Confidence 2233333 1245666677777777666653333332 2222222111 23458899999999
Q ss_pred HHHHhccCCchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHhhcCCCchhhhHHH
Q psy6009 507 RLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQ 586 (866)
Q Consensus 507 ~la~~~~~~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~~~~~~~~~k~~yl~kCie~Ik~~~~svl~SLrl 586 (866)
.++... .......++.+.+++.... ..+.+.+...+.+++... ++.+..-+.++++.+.+- .....++.
T Consensus 366 ~la~~~--~~~~~~~v~~l~~ll~~~~--~~~~~~~~~~i~~ll~~~-----~~~~~~~l~~L~~~l~~~--~~~~~~~~ 434 (526)
T PF01602_consen 366 DLAEKF--PPDAEWYVDTLLKLLEISG--DYVSNEIINVIRDLLSNN-----PELREKILKKLIELLEDI--SSPEALAA 434 (526)
T ss_dssp HHHHHH--GSSHHHHHHHHHHHHHCTG--GGCHCHHHHHHHHHHHHS-----TTTHHHHHHHHHHHHTSS--SSHHHHHH
T ss_pred HHHhcc--CchHHHHHHHHHHhhhhcc--ccccchHHHHHHHHhhcC-----hhhhHHHHHHHHHHHHHh--hHHHHHHH
Confidence 998877 3334668888999888753 223455666677777532 233444566677776663 23334555
Q ss_pred HHHHHHhh
Q psy6009 587 IKDICCLY 594 (866)
Q Consensus 587 i~~I~~l~ 594 (866)
+--++.-|
T Consensus 435 ~~wilGEy 442 (526)
T PF01602_consen 435 AIWILGEY 442 (526)
T ss_dssp HHHHHHHH
T ss_pred HHhhhccc
Confidence 55555555
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=30.57 E-value=1.2e+03 Score=29.55 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhHHHHHHHHhhhcCCCCChHHH
Q psy6009 460 VKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIM 539 (866)
Q Consensus 460 ~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~k~L~LlW~L~~~~~~~~el~ 539 (866)
+..-.++|..+|..=+-++ ++..++.--.+.+..++.+.+.-|+++|.+- ...+..+++.+.+++... .+++
T Consensus 350 K~~KLeIL~~Lane~Nv~~---IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~--~~~a~~cV~~Ll~ll~~~---~~~v 421 (746)
T PTZ00429 350 KLEKLRLLLKLVTPSVAPE---ILKELAEYASGVDMVFVVEVVRAIASLAIKV--DSVAPDCANLLLQIVDRR---PELL 421 (746)
T ss_pred HHHHHHHHHHHcCcccHHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHhcCC---chhH
Confidence 3444455555554333333 3333333323445678888999999998654 446778999999999753 2456
Q ss_pred HHHHHHHHHHhhc
Q psy6009 540 EQALASHLKILDY 552 (866)
Q Consensus 540 ~~Al~~~~~iL~~ 552 (866)
.+++..+.+|++.
T Consensus 422 ~e~i~vik~Ilrk 434 (746)
T PTZ00429 422 PQVVTAAKDIVRK 434 (746)
T ss_pred HHHHHHHHHHHHH
Confidence 6788888888863
No 14
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.32 E-value=3.6e+02 Score=27.56 Aligned_cols=115 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhcCCCC----ChHHHHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHhhcCC--Cchh-hhHHHHHH
Q psy6009 517 MADKVLNLFWSLAHSDDV----MTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNP--KWVV-PALRQIKD 589 (866)
Q Consensus 517 ~~~k~L~LlW~L~~~~~~----~~el~~~Al~~~~~iL~~~~~~~~~~~k~~yl~kCie~Ik~~~--~svl-~SLrli~~ 589 (866)
....++.++-.++.++.. ..++...+|.+|.+++++|. ..=+..-..|+.|++.-+..+. .+++ +||..+..
T Consensus 8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCCCCCCCCccccCCcchHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy6009 590 ICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLL 641 (866)
Q Consensus 590 I~~l~~~~~n~~~~~~r~~~~~~~~~~~~~I~~L~~~~~Lv~Llv~eL~~y~ 641 (866)
++...+..- ..+..+.+..+.+..|+....-+..=.=.|-+++
T Consensus 87 ~Vl~S~~ly---------~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 87 IVLNSPKLY---------QLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHhCCHHHH---------HHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
No 15
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=28.02 E-value=4.1e+02 Score=24.11 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhHHHHHHHHhhhcCCCCChHHHH
Q psy6009 461 KNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIME 540 (866)
Q Consensus 461 ~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~k~L~LlW~L~~~~~~~~el~~ 540 (866)
..|-.++... ..++.++...+++.++....+. ..+..+.+.+.... +.......+..+|.++..+....+-.+
T Consensus 22 ~~i~~~l~~~-~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~r~~~l~~L~~vA~ADG~~~~~E~ 94 (104)
T cd07313 22 AAIDRLLAER-FGLDAEEAAELLAEAEALEEEA-----PDLYEFTSLIKEHF-DYEERLELVEALWEVAYADGELDEYEE 94 (104)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344444443 2466777777777777653321 11334445554433 333456789999999998765555545
Q ss_pred HHHHHHH
Q psy6009 541 QALASHL 547 (866)
Q Consensus 541 ~Al~~~~ 547 (866)
..+.+..
T Consensus 95 ~~l~~ia 101 (104)
T cd07313 95 HLIRRVA 101 (104)
T ss_pred HHHHHHH
Confidence 5554443
No 16
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.45 E-value=1.2e+03 Score=28.52 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHH
Q psy6009 421 PQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEK 500 (866)
Q Consensus 421 ~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ 500 (866)
+|+|.|..+|+.=|. +..+++-+.+|++.|..+...=+..-|.-||..+..++. ..+..|++
T Consensus 91 ~~~v~kvaDvL~QlL-----------------~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~-~de~~Re~ 152 (556)
T PF05918_consen 91 PEHVSKVADVLVQLL-----------------QTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS-GDEQVRER 152 (556)
T ss_dssp -T-HHHHHHHHHHHT-----------------T---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H-S-HHHHHH
T ss_pred HHHHhHHHHHHHHHH-----------------hcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-CchHHHHH
Confidence 888999998887663 344566778899999988888888888999999987543 35678999
Q ss_pred HHHHHHHHHH
Q psy6009 501 LLELIRRLAE 510 (866)
Q Consensus 501 ll~lI~~la~ 510 (866)
++.||+.-..
T Consensus 153 ~lkFl~~kl~ 162 (556)
T PF05918_consen 153 ALKFLREKLK 162 (556)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHh
Confidence 9999975443
No 17
>COG1084 Predicted GTPase [General function prediction only]
Probab=26.89 E-value=6.5e+02 Score=28.82 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred hHHHHHHHHhcChh-----HHHHHHHHHH--HHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCChHH
Q psy6009 723 AEYLWRVITNAGED-----IAFRAIDLLK--EVS-THLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPE 794 (866)
Q Consensus 723 lD~LWrI~L~~~d~-----VA~~AI~lL~--~ly-~~l~~~lq~~~~~ih~~fI~~Cl~~Lk~a~~~l~~~~~~~~~~~q 794 (866)
.|.||.|+...|+- --...++.+. +-| ..+ ..+ +.+..+.++.-.+.+.+|+.+-+ ..+
T Consensus 59 ~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sL-s~v-~~A~~~i~~l~~eYi~~lk~a~~-----------~~~ 125 (346)
T COG1084 59 RDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISL-SAV-SWASKIIEKLAREYIRLLKAAKD-----------PKE 125 (346)
T ss_pred HHHHHHHHHhCCCccccChHHHHHHHHHhCHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCC-----------hhH
Confidence 57888888887763 4455556554 222 222 111 23455666677777777776422 112
Q ss_pred HHHHHH-------HHHH------HHHHhhhhhhhhhhhhcccCCCCCCC-----------chhhhHhhhccccccc----
Q psy6009 795 ARQIWT-------ALAQ------EAIFHCDREACFKWFSKLMTDEPDLD-----------PKMMKDFFEKHVLHFE---- 846 (866)
Q Consensus 795 ~~~i~R-------~Ll~------~yi~~~d~~~~f~w~~~~~~~e~~l~-----------P~~~~~f~~~~i~~~~---- 846 (866)
+.++-| .+++ +|+..+-.... .-|+++ |.+|++-|=++|+.-+
T Consensus 126 ~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~---------~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA 196 (346)
T COG1084 126 ANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLK---------KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA 196 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccC
Confidence 222222 2221 23333332222 455555 7899999999999755
Q ss_pred CcCcccccccccccccccC
Q psy6009 847 PIPHRETLSGLVAADFISG 865 (866)
Q Consensus 847 p~~~~~~~~~~~~~~~~~~ 865 (866)
|+|. |++|+...-|..|
T Consensus 197 ~YPF--TTK~i~vGhfe~~ 213 (346)
T COG1084 197 PYPF--TTKGIHVGHFERG 213 (346)
T ss_pred CCCc--cccceeEeeeecC
Confidence 6899 9999988777654
No 18
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=25.72 E-value=1.4e+03 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q psy6009 345 VKQLEIFRLKIILRLLQISSFNGKMNALNEVNKV 378 (866)
Q Consensus 345 ~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~ 378 (866)
.++..+--+.++.+++.+++.+..+.++.-|.++
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL 317 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL 317 (708)
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567777888899999999998888877666443
No 19
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.53 E-value=1e+03 Score=26.68 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=80.1
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHh--chhHHHHhcCCCChHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKD--NNVLEIVLRDSLHQPQYVEKLEKI 430 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~e--n~Ile~llg~nlHq~E~i~rs~~I 430 (866)
++.+.--++.+.-+---.||+-+.++++.+.. .......+....+..+ ..|+.. +-|..| .--.+....|
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~------~~~~~~~~F~~~y~~~il~~if~v-ltD~~H-k~gf~~q~~i 238 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILLELLNNVSK------TNPEFANQFYQQYYLDILQDIFSV-LTDSDH-KSGFKLQSQI 238 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHHHHHHH-HHSTT--GGGHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHH-HHCccc-HHHHHHHHHH
Confidence 35555667778888888899999999988753 1112223333333321 344554 567889 6666666677
Q ss_pred HHHHH---hccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhc
Q psy6009 431 LRFLI---KEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQAS 489 (866)
Q Consensus 431 l~FL~---~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~ 489 (866)
+..|. +.+.++..-.+ ....+.+-+...+.++|.+..+.++++|+..+..-+-+.
T Consensus 239 L~~Lf~~ve~~~i~~~l~~----~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~ 296 (319)
T PF08767_consen 239 LSNLFRLVESGSIQVPLFD----PGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFEL 296 (319)
T ss_dssp HHHHHHHHHTT-SSSSSSS----TTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccccccccC----CCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 77765 34454544444 555678888999999999999999999999887666554
No 20
>KOG2137|consensus
Probab=22.92 E-value=6.6e+02 Score=31.43 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHHHHHhccCCChhhHHHHHH-HhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHH
Q psy6009 418 LHQPQYVEKLEKILRFLIKEKALSLGDLDAVWA-AQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRK 496 (866)
Q Consensus 418 lHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~-a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~ 496 (866)
+| ...++++.-+...+= ....+..-+=.|=+ +...-.-.++-|+..-++.++..++.-.+.+.+..+.+.-....+.
T Consensus 405 iQ-~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~ 482 (700)
T KOG2137|consen 405 IQ-ELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPA 482 (700)
T ss_pred hH-HHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcH
Confidence 44 666666666655542 33344444445555 3445666788899999999999999988888888888876555566
Q ss_pred hhHHHHHHHHHHHHhccC--CchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy6009 497 QTEKLLELIRRLAEDDKD--GVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKIL 550 (866)
Q Consensus 497 ~r~~ll~lI~~la~~~~~--~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL 550 (866)
....++.+...++-.... .+++..|+-++|-+...+.++-+=-...+.....++
T Consensus 483 iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml 538 (700)
T KOG2137|consen 483 IVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLML 538 (700)
T ss_pred HHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHH
Confidence 677777777787766665 578999999999999988766433333333333333
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=22.61 E-value=1e+03 Score=25.95 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=64.4
Q ss_pred ccCCChhhHHHHHHH-hccCchHHHHHHHHHHHHHhc-ccChhhHHH--HHHHHHhcccccCHHhhHHHHHHHHHHHHhc
Q psy6009 437 EKALSLGDLDAVWAA-QAGKHDAIVKNVHELLAKLAW-DFSPVQLDH--LFVCFQASWTSANRKQTEKLLELIRRLAEDD 512 (866)
Q Consensus 437 ~~~lt~~~ld~IW~a-~~~Khe~i~~~I~~lL~~la~-~l~~eqL~~--Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~ 512 (866)
.+.++.++++.+=.. ...+|+.+...+.-.+...|. .++.+-+-+ -...+...-.+-+++.|++.+..+.+++...
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 456788888888885 457889888887777776655 444444443 2333344333345778888888888888655
Q ss_pred cCCchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHH
Q psy6009 513 KDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLK 548 (866)
Q Consensus 513 ~~~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~ 548 (866)
.............-+.+.......+++.+++..+..
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~n 121 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTN 121 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 432222222222223333333444555555554443
No 22
>KOG2753|consensus
Probab=22.34 E-value=1.1e+03 Score=27.04 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.6
Q ss_pred CccchhhHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhcCC
Q psy6009 554 CSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPG 597 (866)
Q Consensus 554 ~~~~~~~~k~~yl~kCie~Ik~~~~svl~SLrli~~I~~l~~~~ 597 (866)
|...-+++|..| .-.-+-++.. +++-.|.+++.+++..|...
T Consensus 157 w~~~vedqrel~-r~v~~al~~~-k~~~~s~kvmt~lLgtyt~d 198 (378)
T KOG2753|consen 157 WNISVEDQRELL-RAVHKALKDN-KSVDESSKVMTELLGTYTED 198 (378)
T ss_pred CCCCHHHHHHHH-HHHHHHHHhc-chhhhHHHHHHHHHHHhccc
Confidence 444556777766 4445555665 56888999999999999654
No 23
>KOG1077|consensus
Probab=20.95 E-value=1.3e+03 Score=29.17 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=52.0
Q ss_pred HHHHHHhcccccCHHhhHHHHHHHHHHHHhccCC---------chhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhc
Q psy6009 482 LFVCFQASWTSANRKQTEKLLELIRRLAEDDKDG---------VMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDY 552 (866)
Q Consensus 482 Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~---------~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~ 552 (866)
|+..++.-|+...+..|..+.+.+.++-...++. .-...+|-=.-+|+---|..++++..|.+.+...|.+
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSH 340 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence 6677777777766778889999998887655421 1223456556667777788999999999999988863
No 24
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=20.65 E-value=7e+02 Score=30.57 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=71.0
Q ss_pred HHHHHHHh----ccCch---HHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccc-cCHHhhHHHHHHHHHHHHhccCCc
Q psy6009 445 LDAVWAAQ----AGKHD---AIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTS-ANRKQTEKLLELIRRLAEDDKDGV 516 (866)
Q Consensus 445 ld~IW~a~----~~Khe---~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~-~s~~~r~~ll~lI~~la~~~~~~~ 516 (866)
+..+|+.- ..+++ ....-+..+++.+...++++.+...+.++++.-.. .++..+-.++++++++++..-.+.
T Consensus 436 i~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~ 515 (559)
T PF14868_consen 436 ISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPES 515 (559)
T ss_pred HHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCcc
Confidence 35677731 22333 34455677777888899999999999999888644 445567888899999996654344
Q ss_pred hhHHHHHHHHhhhcC--CCCChHHHHHHHHHHH
Q psy6009 517 MADKVLNLFWSLAHS--DDVMTDIMEQALASHL 547 (866)
Q Consensus 517 ~~~k~L~LlW~L~~~--~~~~~el~~~Al~~~~ 547 (866)
...+++.-+|.|.+- .+..--+.+.|+++|.
T Consensus 516 ~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~ 548 (559)
T PF14868_consen 516 DQNPVSPALSELFHMLLADRHWLLHQHALEAFG 548 (559)
T ss_pred ccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 344566666777663 3556667788888864
No 25
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=20.20 E-value=4.1e+02 Score=26.01 Aligned_cols=62 Identities=23% Similarity=0.499 Sum_probs=42.2
Q ss_pred HHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHH-hcccCh
Q psy6009 398 DRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKL-AWDFSP 476 (866)
Q Consensus 398 ~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~l-a~~l~~ 476 (866)
-++.+||.|-. ++ .-+..+...|++-.+ .+.++ .+.+++++... .-.|+.
T Consensus 20 ~~l~~ylkel~------~d----~tf~~Kl~~Il~mFl-~~eid------------------~e~~y~l~~~~d~~~LT~ 70 (122)
T PF06648_consen 20 THLKKYLKELE------RD----ETFLDKLIKILKMFL-NDEID------------------VEDMYNLFGAVDGLKLTR 70 (122)
T ss_pred HHHHHHHHHhc------cC----chHHHHHHHHHHHHH-hCCCC------------------HHHHHHHHhcccHhhcCH
Confidence 45777777765 21 346667777776442 33333 36678888766 239999
Q ss_pred hhHHHHHHHHHh
Q psy6009 477 VQLDHLFVCFQA 488 (866)
Q Consensus 477 eqL~~Lf~~~~~ 488 (866)
.|++|||.++..
T Consensus 71 ~Qi~Yl~~~~~~ 82 (122)
T PF06648_consen 71 SQIDYLYNRVYN 82 (122)
T ss_pred HHHHHHHHHHHc
Confidence 999999999875
No 26
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=20.15 E-value=1.9e+02 Score=24.46 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=33.4
Q ss_pred hhHHHHhhhhhhHHHHHhcchhhhhcCChhhHHHHHHHHHHHHHH
Q psy6009 82 EPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLEL 126 (866)
Q Consensus 82 e~~~~f~~~~l~~~f~kil~~~av~~w~~~i~~~I~~~~~~~i~l 126 (866)
+..+..+......||.|+.++-.-.+.+.....||.++..+.++.
T Consensus 11 ~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~ 55 (66)
T PF02953_consen 11 KDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDT 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 345667777778888888877556677899999999999998874
Done!