Query psy6009
Match_columns 866
No_of_seqs 163 out of 184
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 93.9 11 0.00038 42.8 32.1 151 353-553 276-432 (510)
2 3tpo_A Importin subunit alpha- 88.7 37 0.0013 38.5 28.4 151 353-553 295-451 (529)
3 2qk2_A LP04448P; mini spindles 87.1 26 0.00091 35.1 19.8 177 356-551 20-205 (242)
4 4hxt_A De novo protein OR329; 86.5 26 0.00089 34.4 19.5 204 324-551 19-241 (252)
5 2of3_A ZYG-9; multifunctional 81.0 49 0.0017 34.8 16.9 174 354-552 50-237 (266)
6 2qk1_A Protein STU2; STU2P, XM 80.5 54 0.0019 33.5 18.6 181 357-551 22-220 (249)
7 2jdq_A Importin alpha-1 subuni 80.2 69 0.0023 34.5 29.8 144 353-512 236-392 (450)
8 4db8_A Armadillo-repeat protei 80.2 25 0.00084 35.0 14.0 131 324-472 29-167 (252)
9 4b8j_A Importin subunit alpha- 78.2 91 0.0031 34.8 31.5 142 351-511 286-444 (528)
10 1wa5_B Importin alpha subunit; 77.3 98 0.0034 34.7 31.5 142 352-512 300-459 (530)
11 4db8_A Armadillo-repeat protei 77.0 52 0.0018 32.5 15.3 177 352-550 13-208 (252)
12 1b3u_A Protein (protein phosph 71.5 1.3E+02 0.0045 33.4 23.3 179 353-551 128-310 (588)
13 1xqr_A HSPBP1 protein; armadil 67.3 1.3E+02 0.0044 31.7 22.5 209 363-596 52-287 (296)
14 1w63_A Adapter-related protein 64.9 2.1E+02 0.007 33.2 18.8 119 353-532 315-434 (618)
15 1wa5_B Importin alpha subunit; 62.3 2E+02 0.0068 32.1 24.6 179 351-552 257-458 (530)
16 1xqr_A HSPBP1 protein; armadil 55.5 2.1E+02 0.007 30.1 20.9 72 348-435 164-237 (296)
17 4db6_A Armadillo repeat protei 52.1 1.6E+02 0.0055 27.9 18.5 105 352-472 13-125 (210)
18 4fdd_A Transportin-1; heat rep 49.5 4E+02 0.014 31.7 31.2 100 453-552 639-743 (852)
19 3tpo_A Importin subunit alpha- 48.9 3.3E+02 0.011 30.5 20.5 201 327-550 140-363 (529)
20 2jdq_A Importin alpha-1 subuni 48.0 2.8E+02 0.0096 29.5 22.8 203 325-551 83-305 (450)
21 3now_A UNC-45 protein, SD10334 44.9 5E+02 0.017 31.5 23.3 176 327-553 601-784 (810)
22 4b8j_A Importin subunit alpha- 43.7 3.7E+02 0.013 29.7 26.0 200 327-552 223-444 (528)
23 1fyh_A Interferon-gamma; cytok 36.5 1.6E+02 0.0055 30.6 9.8 80 325-404 48-162 (258)
24 1u6g_C TIP120 protein, CAND1; 36.1 2.9E+02 0.0098 34.5 14.4 101 449-550 54-162 (1230)
25 1ibr_B P95, importin beta-1 su 34.8 4.4E+02 0.015 27.9 24.6 93 457-551 342-437 (462)
26 3ul1_B Importin subunit alpha- 33.8 5.3E+02 0.018 28.6 19.3 201 327-550 121-344 (510)
27 4hxt_A De novo protein OR329; 33.7 3.3E+02 0.011 26.1 23.2 149 347-512 82-243 (252)
28 3u0r_A Apoptosis inhibitor 5; 32.8 6.1E+02 0.021 29.0 17.4 236 204-514 103-362 (507)
29 1b3u_A Protein (protein phosph 32.1 5.4E+02 0.019 28.2 21.9 107 443-551 441-548 (588)
30 4ffb_C Protein STU2; tubulin f 28.8 3.9E+02 0.013 27.0 11.8 177 360-552 18-213 (278)
31 3b2a_A TON_1937, putative unch 25.4 6E+02 0.02 26.5 12.6 106 442-553 74-181 (265)
32 3f4m_A Tumor necrosis factor, 23.6 5.1E+02 0.018 25.1 14.8 121 321-451 9-139 (161)
33 3i5p_A Nucleoporin NUP170; hel 22.2 2.8E+02 0.0097 31.9 9.8 82 395-486 179-263 (525)
34 1qgr_A Protein (importin beta 21.7 9.9E+02 0.034 27.8 29.8 94 456-551 341-437 (876)
35 1ibr_B P95, importin beta-1 su 20.1 7.8E+02 0.027 25.9 17.0 132 461-595 107-249 (462)
36 4fdd_A Transportin-1; heat rep 20.0 1.1E+03 0.038 27.7 25.3 88 457-546 335-424 (852)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.87 E-value=11 Score=42.80 Aligned_cols=151 Identities=12% Similarity=0.127 Sum_probs=83.4
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEKI 430 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~I 430 (866)
+..+.++++++....+..++..|..++.. .+.....+.+.+++..+..= +-+ +++.+.+.-.
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~---------------~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~~a 339 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTG---------------TDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT 339 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcC---------------CHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHHHH
Confidence 45667888999888888888888666543 13455667777877765432 223 5666666665
Q ss_pred HHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHH
Q psy6009 431 LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAE 510 (866)
Q Consensus 431 l~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~ 510 (866)
+.-|+.. +.++...+.+. .-+..|...++. .+...+....-.|.+++.
T Consensus 340 L~nl~a~---~~~~~~~v~~~-------------------------g~i~~Lv~lL~~----~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 340 MSNITAG---RQDQIQQVVNH-------------------------GLVPFLVGVLSK----ADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHTTS---CHHHHHHHHHT-------------------------THHHHHHHHHHS----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC---cHHHHHHHHhc-------------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHc
Confidence 5555322 22233222221 111222222221 233445555555666654
Q ss_pred hccC---Cch-hHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhcc
Q psy6009 511 DDKD---GVM-ADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYS 553 (866)
Q Consensus 511 ~~~~---~~~-~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~ 553 (866)
.... ..+ ...++..|-+|+..+ .++++..++..+..||+.+
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHh
Confidence 3221 111 123456666777655 4678889999998888753
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=88.71 E-value=37 Score=38.53 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=82.1
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhc--CCCChHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLR--DSLHQPQYVEKLEKI 430 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg--~nlHq~E~i~rs~~I 430 (866)
+..+..+++++....+..++.-|..+... .+.....+.+.|++..+.. .+.+ +++.+.+.-+
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~---------------~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a~~a 358 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTG---------------TDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT 358 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHH
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHcc---------------chHHHHHHhhcccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 45567788888888888888887665532 1345566777777665432 1233 5555555555
Q ss_pred HHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHH
Q psy6009 431 LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAE 510 (866)
Q Consensus 431 l~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~ 510 (866)
+.-|+.. +.++...+.+ ..-+..|...++. .+...+....-.|.+++.
T Consensus 359 L~nl~~~---~~~~~~~v~~-------------------------~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 359 MSNITAG---RQDQIQQVVN-------------------------HGLVPFLVGVLSK----ADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHTS---CHHHHHHHHH-------------------------TTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc---cHHHHHHHHh-------------------------cCcHHHHHHHhcC----CCHHHHHHHHHHHHHHHc
Confidence 5554322 1122221111 1112222222222 234455555666666664
Q ss_pred hccC---Cch-hHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhcc
Q psy6009 511 DDKD---GVM-ADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYS 553 (866)
Q Consensus 511 ~~~~---~~~-~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~ 553 (866)
.... ..+ ...++..|-+|+..+ .++++..++.++..||+.+
T Consensus 407 ~~~~~~~~~l~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCcCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHh
Confidence 4221 111 123566677777655 4678888999988888653
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.08 E-value=26 Score=35.06 Aligned_cols=177 Identities=10% Similarity=0.074 Sum_probs=118.7
Q ss_pred HHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy6009 356 ILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLI 435 (866)
Q Consensus 356 ~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~ 435 (866)
++..+.+..-..|.+|+..|..+++...... . . ....+...| -.+++..-| +++...+...++-|+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----~-~--~~~~i~~~L------~~~l~kd~~-~~V~~~a~~~l~~la 85 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----N-G--EYGALVSAL------KKVITKDSN-VVLVAMAGKCLALLA 85 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----C-C--CCHHHHHHH------HHHHHHCSC-HHHHHHHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCC----C-C--CHHHHHHHH------HHHhccCCC-HHHHHHHHHHHHHHH
Confidence 3456788999999999999999988632110 0 0 112333332 224431235 888888888888887
Q ss_pred hc--c---CCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHH
Q psy6009 436 KE--K---ALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAE 510 (866)
Q Consensus 436 ~~--~---~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~ 510 (866)
.. + .+...-+..||.....++..++.+....|..++...+. ..++..+.....+.++..|...+.+|.++..
T Consensus 86 ~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 86 KGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 43 1 22334467788888889999999999999999998765 4455556555555678899999999999765
Q ss_pred hcc-C---CchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhh
Q psy6009 511 DDK-D---GVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILD 551 (866)
Q Consensus 511 ~~~-~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~ 551 (866)
... . ...-..++..+..++.| ..+++.+.|...+..+..
T Consensus 163 ~~~~~~~~~~~l~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 163 RTQPTALNKKLLKLLTTSLVKTLNE--PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 532 2 12223577777777754 456777777777666553
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.53 E-value=26 Score=34.40 Aligned_cols=204 Identities=12% Similarity=0.152 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHH
Q psy6009 324 ISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKW 403 (866)
Q Consensus 324 ~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~W 403 (866)
-...+.++.+++..- .+.....++.--+..+.++++++.-+.|..|+.-+..+...- ....+-
T Consensus 19 ~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~ 81 (252)
T 4hxt_A 19 QKEAARDLAEIASGP--ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---------------DEAIKA 81 (252)
T ss_dssp HHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---------------HHHHHH
T ss_pred HHHHHHHHHHHhcCC--cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---------------hHHHHH
Confidence 344456666776433 223344555567888999999999888888888886665431 234455
Q ss_pred HHhchhHHHHhcC--CCChHHHHHHHHHHHHHHHhccC------CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccC
Q psy6009 404 IKDNNVLEIVLRD--SLHQPQYVEKLEKILRFLIKEKA------LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFS 475 (866)
Q Consensus 404 L~en~Ile~llg~--nlHq~E~i~rs~~Il~FL~~~~~------lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~ 475 (866)
+.+.+++..++.- +-+ +++...+...+.-|+.... +...-+..+-+.-...++.++......|..++..-.
T Consensus 82 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 6667776664331 234 8888888889988874221 111346667777777788888888888888876422
Q ss_pred hh--------hHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccC---CchhHHHHHHHHhhhcCCCCChHHHHHHHH
Q psy6009 476 PV--------QLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKD---GVMADKVLNLFWSLAHSDDVMTDIMEQALA 544 (866)
Q Consensus 476 ~e--------qL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al~ 544 (866)
.. -+..|.+.++ +.++..+...+..+.+++..+.. ......++..+.++++++ .+++...|+.
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 234 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST--DSEVQKEAQR 234 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC--cHHHHHHHHH
Confidence 11 2333444333 23456677777777777653221 111223556666666643 3466666666
Q ss_pred HHHHHhh
Q psy6009 545 SHLKILD 551 (866)
Q Consensus 545 ~~~~iL~ 551 (866)
.+..+..
T Consensus 235 ~L~~l~~ 241 (252)
T 4hxt_A 235 ALENIKS 241 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666554
No 5
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.04 E-value=49 Score=34.84 Aligned_cols=174 Identities=15% Similarity=0.238 Sum_probs=110.5
Q ss_pred HHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHH
Q psy6009 354 KIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRF 433 (866)
Q Consensus 354 ~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~F 433 (866)
++..++|. ..+..|+.|+..|.+.+.... ..-..+.+-+.+|+.- -|-++ + +.+..++-+++.-
T Consensus 50 ~~~~~lfs-~d~k~~~~ale~L~~~l~~~~-------~~~~~~lDll~kw~~l------r~~d~-N-~~v~~~~L~~L~~ 113 (266)
T 2of3_A 50 SLMSQLFH-KDFKQHLAALDSLVRLADTSP-------RSLLSNSDLLLKWCTL------RFFET-N-PAALIKVLELCKV 113 (266)
T ss_dssp HHHHHHTC-SCHHHHHHHHHHHHHHHHHCH-------HHHHHTHHHHHHHHHH------HTTSC-C-HHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhhhCh-------HHHHHHHHHHHHHHHH------HHhCC-C-HHHHHHHHHHHHH
Confidence 44555555 467999999999988877521 1222345667888841 12233 4 7777777776666
Q ss_pred HH----h-ccCCChhhHHHHHH-----HhccCchHHHHHHHHHHHHHhcccChh-hHHHHHHHHHhcccccCHHhhHHHH
Q psy6009 434 LI----K-EKALSLGDLDAVWA-----AQAGKHDAIVKNVHELLAKLAWDFSPV-QLDHLFVCFQASWTSANRKQTEKLL 502 (866)
Q Consensus 434 L~----~-~~~lt~~~ld~IW~-----a~~~Khe~i~~~I~~lL~~la~~l~~e-qL~~Lf~~~~~~~~~~s~~~r~~ll 502 (866)
++ . +-.++..+...+=- ++ ...+++++.+.+++..+....++. -..++.+ -+.+-|.++|+.++
T Consensus 114 l~~~l~~~~y~~~~~ea~~~lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~----g~ksKN~R~R~e~l 188 (266)
T 2of3_A 114 IVELIRDTETPMSQEEVSAFVPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD----ALKSKNARQRSECL 188 (266)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----GGGCSCHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHccCCHHHHHHHH
Confidence 53 2 23455555433332 33 355889999999999998877665 3444444 34445789999999
Q ss_pred HHHHHHHHhccCCchhHHHH---HHHHhhhcCCCCChHHHHHHHHHHHHHhhc
Q psy6009 503 ELIRRLAEDDKDGVMADKVL---NLFWSLAHSDDVMTDIMEQALASHLKILDY 552 (866)
Q Consensus 503 ~lI~~la~~~~~~~~~~k~L---~LlW~L~~~~~~~~el~~~Al~~~~~iL~~ 552 (866)
+.|..+.+...-. ..+.+ ..+=.++- +...++-++|+....++-+.
T Consensus 189 ~~l~~li~~~G~~--~~~~l~~~~~ia~ll~--D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 189 LVIEYYITNAGIS--PLKSLSVEKTVAPFVG--DKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHCSG--GGGGGCHHHHHGGGGG--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--ccccccchHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 9999888775322 23444 33333333 45567889999998887764
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.54 E-value=54 Score=33.54 Aligned_cols=181 Identities=12% Similarity=0.182 Sum_probs=113.0
Q ss_pred HHHhccccchhhhhHHHHHHH-HhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy6009 357 LRLLQISSFNGKMNALNEVNK-VIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLI 435 (866)
Q Consensus 357 lrllkss~l~~R~~gL~ei~~-~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~ 435 (866)
...++|+.-.-|..|+.+|.. +++...........-.. ..+.+..+| +...| +.++..+...++.|+
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~~~~L~~~l----------~~D~n-~~v~~~A~~al~~la 89 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-LLGIYGHII----------QKDAN-IQAVALAAQSVELIC 89 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-HHHHHHHHH----------HHCSC-HHHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-HHHHHHHHh----------ccCCC-HHHHHHHHHHHHHHH
Confidence 345689999999999999988 77653211100000001 133444444 22345 677788888888888
Q ss_pred hc---cCCChhhHHH----HHHHhccCchHHHHHHHHHHHHHhcccChh----hHHHHHHHHHhcccccCHHhhHHHHHH
Q psy6009 436 KE---KALSLGDLDA----VWAAQAGKHDAIVKNVHELLAKLAWDFSPV----QLDHLFVCFQASWTSANRKQTEKLLEL 504 (866)
Q Consensus 436 ~~---~~lt~~~ld~----IW~a~~~Khe~i~~~I~~lL~~la~~l~~e----qL~~Lf~~~~~~~~~~s~~~r~~ll~l 504 (866)
.. +.++..|... |-.....|..+++++....+..++...++. .++.+.+.+-....+.++..|+..+.+
T Consensus 90 ~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 90 DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 52 3555345544 444556788999999999999999877421 144455544444444467899999999
Q ss_pred HHHHHHhccCC--c----hhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhh
Q psy6009 505 IRRLAEDDKDG--V----MADKVLNLFWSLAHSDDVMTDIMEQALASHLKILD 551 (866)
Q Consensus 505 I~~la~~~~~~--~----~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~ 551 (866)
|.+++...+.. . +....+..+=.++. +..+++.++|...+..+..
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 99999877531 1 11234444444443 3477888888887766654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.20 E-value=69 Score=34.48 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=89.6
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEKI 430 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~I 430 (866)
+..++++++++.-+.|..|+.-+..+.... +...+.+.+.+++..+..- +-+ +.+.+.+-..
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~ 299 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGD---------------DIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWT 299 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCC---------------hHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 456667777777777888887776665431 2234455666776654321 224 7788888888
Q ss_pred HHHHHhccC------CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHH-----HHHhcccccCHHhhH
Q psy6009 431 LRFLIKEKA------LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFV-----CFQASWTSANRKQTE 499 (866)
Q Consensus 431 l~FL~~~~~------lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~-----~~~~~~~~~s~~~r~ 499 (866)
++-|+.... +...-+..+-+.-...++.++.+....|..++...+++++.++++ .+-..-.+.+++.+.
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 379 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 888764221 011223344445556788899999999999988777777766543 222222233567788
Q ss_pred HHHHHHHHHHHhc
Q psy6009 500 KLLELIRRLAEDD 512 (866)
Q Consensus 500 ~ll~lI~~la~~~ 512 (866)
..+..+..++...
T Consensus 380 ~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 380 VALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887544
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=80.18 E-value=25 Score=34.96 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHH
Q psy6009 324 ISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKW 403 (866)
Q Consensus 324 ~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~W 403 (866)
-.....++.++++. +.+.....++.--+..++++++++.-+.|..|+..|..+.... ....+-
T Consensus 29 ~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~ 91 (252)
T 4db8_A 29 QLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---------------NEQIQA 91 (252)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---------------HHHHHH
T ss_pred HHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---------------HHHHHH
Confidence 33445566555544 2333444566667788999999999888988988886666431 233455
Q ss_pred HHhchhHHHHhcC--CCChHHHHHHHHHHHHHHHhccCCC------hhhHHHHHHHhccCchHHHHHHHHHHHHHhc
Q psy6009 404 IKDNNVLEIVLRD--SLHQPQYVEKLEKILRFLIKEKALS------LGDLDAVWAAQAGKHDAIVKNVHELLAKLAW 472 (866)
Q Consensus 404 L~en~Ile~llg~--nlHq~E~i~rs~~Il~FL~~~~~lt------~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~ 472 (866)
+.+.|+++.+..- +-+ +++.+.+...++-|+...... ..=+..+=+.-...++.++.+....|..++.
T Consensus 92 i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 6677777664432 224 788888888888886443211 1123344444455667777777777777764
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=78.23 E-value=91 Score=34.78 Aligned_cols=142 Identities=14% Similarity=0.063 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHH---hcCCCChHHHHHHH
Q psy6009 351 FRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIV---LRDSLHQPQYVEKL 427 (866)
Q Consensus 351 ~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~l---lg~nlHq~E~i~rs 427 (866)
--+..+.++++++.-..|..|+.-|..++... +...+.+.+.+++..| +.+..+ +.+.+.+
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~---------------~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A 349 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGD---------------DAQTQCIIDHQALPCLLSLLTQNLK-KSIKKEA 349 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC---------------HHHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHH
Confidence 34667778888888778888888876666531 2344455566666553 333335 8888888
Q ss_pred HHHHHHHHhccCCChhhHH---------HHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHH-----HHHhccccc
Q psy6009 428 EKILRFLIKEKALSLGDLD---------AVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFV-----CFQASWTSA 493 (866)
Q Consensus 428 ~~Il~FL~~~~~lt~~~ld---------~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~-----~~~~~~~~~ 493 (866)
...+.-|+.. +.+.+. .+-++-...++.++.+....|..++..-++++..+|.+ .+...-.+.
T Consensus 350 ~~~L~nl~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 426 (528)
T 4b8j_A 350 CWTISNITAG---NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426 (528)
T ss_dssp HHHHHHHHTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHCC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 8888888753 333333 33344445688899999999999988777777776542 222222234
Q ss_pred CHHhhHHHHHHHHHHHHh
Q psy6009 494 NRKQTEKLLELIRRLAED 511 (866)
Q Consensus 494 s~~~r~~ll~lI~~la~~ 511 (866)
++..+...+..+.++...
T Consensus 427 d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKV 444 (528)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566677777777777644
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=77.32 E-value=98 Score=34.65 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=88.4
Q ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHH
Q psy6009 352 RLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEK 429 (866)
Q Consensus 352 ~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~ 429 (866)
-+..++.+++++.-..|..|+.-|..++... +...+.+.+.+++..+..- +-+ +++.+.+..
T Consensus 300 ~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~ 363 (530)
T 1wa5_B 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGN---------------DLQTQVVINAGVLPALRLLLSSPK-ENIKKEACW 363 (530)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred cHHHHHHHHCCCChhhHHHHHHHHHHHHcCC---------------HHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHH
Confidence 3566677777777777888887776655421 2233444556666654321 224 788888888
Q ss_pred HHHHHHhccCCChhhHH---------HHHHHhccCchHHHHHHHHHHHHHhcccCh--hhHHHHHH-----HHHhccccc
Q psy6009 430 ILRFLIKEKALSLGDLD---------AVWAAQAGKHDAIVKNVHELLAKLAWDFSP--VQLDHLFV-----CFQASWTSA 493 (866)
Q Consensus 430 Il~FL~~~~~lt~~~ld---------~IW~a~~~Khe~i~~~I~~lL~~la~~l~~--eqL~~Lf~-----~~~~~~~~~ 493 (866)
.+.-|+.. +.+++. .+-++-...++.++.+....|..++...++ ++..++++ .+...-.+.
T Consensus 364 aL~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 440 (530)
T 1wa5_B 364 TISNITAG---NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA 440 (530)
T ss_dssp HHHHHTTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC
T ss_pred HHHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 88888643 233333 333444567888999999999999887766 66665543 122222223
Q ss_pred CHHhhHHHHHHHHHHHHhc
Q psy6009 494 NRKQTEKLLELIRRLAEDD 512 (866)
Q Consensus 494 s~~~r~~ll~lI~~la~~~ 512 (866)
++..+...+..+..+....
T Consensus 441 ~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMG 459 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 5677888888888887543
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=77.00 E-value=52 Score=32.50 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=108.3
Q ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHH
Q psy6009 352 RLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEK 429 (866)
Q Consensus 352 ~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~ 429 (866)
.++.+.++++|+.-+.|..|+..+..++..- ..-.+-+.+.+++..++.- +-+ +++...+..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~---------------~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~ 76 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDG---------------NEQIQAVIDAGALPALVQLLSSPN-EQILQEALW 76 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH---------------HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------------CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHH
Confidence 4667788899999999999999997666541 2233456677777765432 233 888888888
Q ss_pred HHHHHHhccCC------ChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChh--------hHHHHHHHHHhcccccCH
Q psy6009 430 ILRFLIKEKAL------SLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPV--------QLDHLFVCFQASWTSANR 495 (866)
Q Consensus 430 Il~FL~~~~~l------t~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~e--------qL~~Lf~~~~~~~~~~s~ 495 (866)
+++-|+....- ...-+..+=+.-...++.++.+....|..++..-... -+..|.+.++ +.++
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~ 152 (252)
T 4db8_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNE 152 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG----CSCH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh----CCCH
Confidence 88888753210 0112444444555677888888888888876543332 2333443332 2345
Q ss_pred HhhHHHHHHHHHHHHhccC---CchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy6009 496 KQTEKLLELIRRLAEDDKD---GVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKIL 550 (866)
Q Consensus 496 ~~r~~ll~lI~~la~~~~~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL 550 (866)
..+...+..+.+++..+.. ......++..+-+++.++ .+++...|+..+..+.
T Consensus 153 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 153 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 6677777777777753321 111123455666666654 5667777776666655
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=71.50 E-value=1.3e+02 Score=33.42 Aligned_cols=179 Identities=9% Similarity=0.057 Sum_probs=105.2
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILR 432 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~ 432 (866)
+.++.++.+++....|..|..-+..++..... ...+.+...+ ..++.+ -+ +++-..+...++
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~----------~~~~~l~~~l------~~l~~d-~~-~~VR~~a~~~l~ 189 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS----------AVKAELRQYF------RNLCSD-DT-PMVRRAAASKLG 189 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH----------HHHHHHHHHH------HHHHTC-SC-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHH------HHHhCC-CC-HHHHHHHHHHHH
Confidence 45556667777777888777666554443210 0112222222 123333 23 555555666666
Q ss_pred HHHhccC---CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhH-HHHHHHHHhcccccCHHhhHHHHHHHHHH
Q psy6009 433 FLIKEKA---LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQL-DHLFVCFQASWTSANRKQTEKLLELIRRL 508 (866)
Q Consensus 433 FL~~~~~---lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL-~~Lf~~~~~~~~~~s~~~r~~ll~lI~~l 508 (866)
-++..-. +..+-+..+.......++.++..-...|..++..++.+.. .++...+.+.-.+.+...|......+..+
T Consensus 190 ~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL 269 (588)
T ss_dssp HHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHH
T ss_pred HHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 5543211 1122344555666677888888888999999988887543 33444444443445567888888888888
Q ss_pred HHhccCCchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhh
Q psy6009 509 AEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILD 551 (866)
Q Consensus 509 a~~~~~~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~ 551 (866)
+............+..+-.++.++ .+++...|...+..+..
T Consensus 270 ~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 270 QKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHCHHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHH
Confidence 875433233345677777777654 46677777777666664
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=67.26 E-value=1.3e+02 Score=31.72 Aligned_cols=209 Identities=11% Similarity=0.065 Sum_probs=131.5
Q ss_pred ccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhc---CCCChHHHHHHHHHHHHHHHhccC
Q psy6009 363 SSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLR---DSLHQPQYVEKLEKILRFLIKEKA 439 (866)
Q Consensus 363 s~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg---~nlHq~E~i~rs~~Il~FL~~~~~ 439 (866)
.+.+-|+.|+..+..+++... .+.-+.+.|.+..++. .+-+ +++-..+..+++-++..+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d----------------na~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~~n~ 114 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD----------------NAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVA 114 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH----------------HHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHhChh----------------hHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCH
Confidence 346778889888887777532 1222345555555433 2445 8999999999999886542
Q ss_pred ------CChhhHHHHHHHhc-cCchHHHHHHHHHHHHHhcccCh--------hhHHHHHHHHHhcccccCHHhhHHHHHH
Q psy6009 440 ------LSLGDLDAVWAAQA-GKHDAIVKNVHELLAKLAWDFSP--------VQLDHLFVCFQASWTSANRKQTEKLLEL 504 (866)
Q Consensus 440 ------lt~~~ld~IW~a~~-~Khe~i~~~I~~lL~~la~~l~~--------eqL~~Lf~~~~~~~~~~s~~~r~~ll~l 504 (866)
+...=+..+++.-. ..+..++.+..-.|..++....+ ..+..|...++. .+.+.+....-.
T Consensus 115 ~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~----~d~~v~~~A~~a 190 (296)
T 1xqr_A 115 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----QVQKLKVKSAFL 190 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHH
Confidence 22345667777554 45678888888888887754332 344556555543 356788888999
Q ss_pred HHHHHHhccC---CchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhccCccchhh------HHHHHHHHHHHHhhc
Q psy6009 505 IRRLAEDDKD---GVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDK------QKTIWLQTCIEEFKS 575 (866)
Q Consensus 505 I~~la~~~~~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~~~~~~~~------~k~~yl~kCie~Ik~ 575 (866)
|..++..+.+ ......++..+-.|+..+ .+++++.|+..+..|+... .+.... .=.++|..++++|..
T Consensus 191 Ls~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~ 267 (296)
T 1xqr_A 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQ 267 (296)
T ss_dssp HHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccc
Confidence 9999866432 122234667777777765 4579999999999998742 111111 124778889999986
Q ss_pred CCCchhhhHHHHHHHHHhhcC
Q psy6009 576 NPKWVVPALRQIKDICCLYEP 596 (866)
Q Consensus 576 ~~~svl~SLrli~~I~~l~~~ 596 (866)
++. ---=.+...+|+..|..
T Consensus 268 ~e~-~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 268 HEE-YQEELEFCEKLLQTCFS 287 (296)
T ss_dssp CGG-GHHHHHHHHHHHHHHCC
T ss_pred hHH-HHHHHHHHHHHHHHHcC
Confidence 531 11123446667776643
No 14
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=64.88 E-value=2.1e+02 Score=33.18 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=66.3
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHH
Q psy6009 353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILR 432 (866)
Q Consensus 353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~ 432 (866)
.+.+.+++.++.-+.|..||..|.++.... |+.+++
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--------------------------------------p~~~~~------ 350 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTD--------------------------------------HNAVQR------ 350 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--------------------------------------HHHHGG------
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhC--------------------------------------HHHHHH------
Confidence 456667788888888888888887666541 332222
Q ss_pred HHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhh-HHHHHHHHHhcccccCHHhhHHHHHHHHHHHHh
Q psy6009 433 FLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQ-LDHLFVCFQASWTSANRKQTEKLLELIRRLAED 511 (866)
Q Consensus 433 FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eq-L~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~ 511 (866)
|.+.|-.+-...+..|+..-.++|..++..=+.+. +..|.+.+. +.+..+|..++..|.+++..
T Consensus 351 -----------~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~----~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 351 -----------HRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLD----SCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp -----------GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHS
T ss_pred -----------HHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence 22233333344566666666677766666433222 222333332 23456777777777777765
Q ss_pred ccCCchhHHHHHHHHhhhcCC
Q psy6009 512 DKDGVMADKVLNLFWSLAHSD 532 (866)
Q Consensus 512 ~~~~~~~~k~L~LlW~L~~~~ 532 (866)
.. .-...+++.+..++.+.
T Consensus 416 ~~--~~~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 416 YA--PSKRWHIDTIMRVLTTA 434 (618)
T ss_dssp SC--CCHHHHHHHHHHHHHHT
T ss_pred hC--ccHHHHHHHHHHHHHhc
Confidence 32 12344555555666654
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=62.32 E-value=2e+02 Score=32.10 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=109.8
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHH
Q psy6009 351 FRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLE 428 (866)
Q Consensus 351 ~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~ 428 (866)
--+..++++++++.-+.|..|+.-|..++... ....+.+.+.+++..|+.- +.+ +++...+-
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~---------------~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~ 320 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGP---------------QEAIQAVIDVRIPKRLVELLSHES-TLVQTPAL 320 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC---------------HHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC---------------HHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHH
Confidence 34566777788877777777777776555421 1223344555665554321 223 67777777
Q ss_pred HHHHHHHhccC------CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhH---------HHHHHHHHhccccc
Q psy6009 429 KILRFLIKEKA------LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQL---------DHLFVCFQASWTSA 493 (866)
Q Consensus 429 ~Il~FL~~~~~------lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL---------~~Lf~~~~~~~~~~ 493 (866)
.+++-|+.... +...-+..+-..-...++.++.+....|..++.. +.+++ ..|+..++. .
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~----~ 395 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEV----A 395 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHH----S
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhc----C
Confidence 77877764321 1123344555555566788888888888888752 33443 344444432 3
Q ss_pred CHHhhHHHHHHHHHHHHhccC------CchhHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhc
Q psy6009 494 NRKQTEKLLELIRRLAEDDKD------GVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDY 552 (866)
Q Consensus 494 s~~~r~~ll~lI~~la~~~~~------~~~~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~ 552 (866)
++..+......|.+++..... ......++..+-.++.++ .+++...|+..+..++..
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILKM 458 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHh
Confidence 567788888888888865321 111223667777777654 578888898888888864
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=55.53 E-value=2.1e+02 Score=30.15 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHH
Q psy6009 348 LEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVE 425 (866)
Q Consensus 348 ~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~ 425 (866)
.+.-.+..+.++++++....|..|+.-|..++..- ....+.+.+.|++..|+.= +-+ +++.+
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~---------------~~~~~~vv~~g~i~~Lv~LL~~~d-~~v~~ 227 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH---------------PEHKGTLCSMGMVQQLVALVRTEH-SPFHE 227 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---------------GGGHHHHHHTTHHHHHHHHHTSCC-STHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---------------hHHHHHHHHcCCHHHHHHHHcCCC-hhHHH
Confidence 33446788999999999999988888887666541 1235567777877765431 112 45555
Q ss_pred HHHHHHHHHH
Q psy6009 426 KLEKILRFLI 435 (866)
Q Consensus 426 rs~~Il~FL~ 435 (866)
.+...++-|+
T Consensus 228 ~al~aL~~l~ 237 (296)
T 1xqr_A 228 HVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=52.11 E-value=1.6e+02 Score=27.91 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHH
Q psy6009 352 RLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEK 429 (866)
Q Consensus 352 ~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~ 429 (866)
-...+.++++++.-+.|..|+..|..+...- ....+.+.+.+++..++.- +-+ +++...+..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~---------------~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~ 76 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGG---------------NEQIQAVIDAGALPALVQLLSSPN-EQILQEALW 76 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---------------HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHH
Confidence 3456788899999999999998887766431 2344567777777765431 224 888888888
Q ss_pred HHHHHHhccC------CChhhHHHHHHHhccCchHHHHHHHHHHHHHhc
Q psy6009 430 ILRFLIKEKA------LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAW 472 (866)
Q Consensus 430 Il~FL~~~~~------lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~ 472 (866)
.++-|+..+. +...-+..+-+.-...++.++......|..++.
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence 8888864321 112235566666666778888888888888875
No 18
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=49.53 E-value=4e+02 Score=31.67 Aligned_cols=100 Identities=8% Similarity=0.004 Sum_probs=68.7
Q ss_pred ccCchHHHHHHHHHHHHHhcccChhh---HHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhcc--CCchhHHHHHHHHh
Q psy6009 453 AGKHDAIVKNVHELLAKLAWDFSPVQ---LDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK--DGVMADKVLNLFWS 527 (866)
Q Consensus 453 ~~Khe~i~~~I~~lL~~la~~l~~eq---L~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~--~~~~~~k~L~LlW~ 527 (866)
..+...++...+.++.+++..+..+- +..+...+.+.-.......|......++.++..-. -......++..+.+
T Consensus 639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 44567788888889998887665432 23343333343333345667777778888876543 24455789999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhhc
Q psy6009 528 LAHSDDVMTDIMEQALASHLKILDY 552 (866)
Q Consensus 528 L~~~~~~~~el~~~Al~~~~~iL~~ 552 (866)
++.+++.+..+.+.|....-.+...
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHh
Confidence 9998888888988888777766653
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=48.89 E-value=3.3e+02 Score=30.53 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=106.1
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHh
Q psy6009 327 IIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKD 406 (866)
Q Consensus 327 ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~e 406 (866)
...+|.+|++.- .+.....++.=-+..+.++++|+..+.|-.|+.-|..+...- ....+.+.+
T Consensus 140 Aa~aL~nia~~~--~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~---------------~~~r~~i~~ 202 (529)
T 3tpo_A 140 SAWALTNIASGT--SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG---------------SAFRDLVIK 202 (529)
T ss_dssp HHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---------------HHHHHHHHH
T ss_pred HHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC---------------HHHHHHHHH
Confidence 344666676422 233334455556788899999999999999988887766431 344556666
Q ss_pred chhHHHHhcC------CCChHHHHHHHHHHHHHHHhccCCCh------hhHHHHHHHhccCchHHHHHHHHHHHHHhccc
Q psy6009 407 NNVLEIVLRD------SLHQPQYVEKLEKILRFLIKEKALSL------GDLDAVWAAQAGKHDAIVKNVHELLAKLAWDF 474 (866)
Q Consensus 407 n~Ile~llg~------nlHq~E~i~rs~~Il~FL~~~~~lt~------~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l 474 (866)
.|++..++.= ......+.+.+...+.-++..+.-.. .-+..+++.-...++.++......|..++..-
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 7766654431 01113455555555555654432211 12344566556666666666655565555422
Q ss_pred C--------hhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhcc---CCchhHHHHHHHHhhhcCCCCChHHHHHHH
Q psy6009 475 S--------PVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK---DGVMADKVLNLFWSLAHSDDVMTDIMEQAL 543 (866)
Q Consensus 475 ~--------~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~---~~~~~~k~L~LlW~L~~~~~~~~el~~~Al 543 (866)
+ ..-+..|.+++. +.+...+...+..|+.++..+. .......++..|..|+.++ .+++...|.
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~~a~ 356 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLG----ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEAT 356 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHHHH
T ss_pred hhhHHHHHhccchHHHHHHhc----CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--CHHHHHHHH
Confidence 1 112233343332 2234556666666666653321 1111223445555555543 345555555
Q ss_pred HHHHHHh
Q psy6009 544 ASHLKIL 550 (866)
Q Consensus 544 ~~~~~iL 550 (866)
-.+..|-
T Consensus 357 ~aL~nl~ 363 (529)
T 3tpo_A 357 WTMSNIT 363 (529)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=48.05 E-value=2.8e+02 Score=29.51 Aligned_cols=203 Identities=13% Similarity=0.016 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHH
Q psy6009 325 SVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWI 404 (866)
Q Consensus 325 ~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL 404 (866)
.....++.+++..- .+.....++.--+..++++++++.-+.|..|+.-+..+.... ....+.+
T Consensus 83 ~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~---------------~~~~~~~ 145 (450)
T 2jdq_A 83 FESAWVLTNIASGN--SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS---------------TMCRDYV 145 (450)
T ss_dssp HHHHHHHHHHHSSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---------------HHHHHHH
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC---------------HHHHHHH
Confidence 34445556666322 222223344556788999999999999999998887776542 1234456
Q ss_pred HhchhHHHHh---cCCCChHHHHHHHHHHHHHHHhcc--C----CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccC
Q psy6009 405 KDNNVLEIVL---RDSLHQPQYVEKLEKILRFLIKEK--A----LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFS 475 (866)
Q Consensus 405 ~en~Ile~ll---g~nlHq~E~i~rs~~Il~FL~~~~--~----lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~ 475 (866)
.+.+++..++ .+.-+ +++...+...+.-|+... . +-..-+..+-+.-...++.++.+....|..++..-.
T Consensus 146 ~~~~~i~~L~~~l~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 224 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQNR-LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224 (450)
T ss_dssp HHTTCHHHHHHHTTSCCC-HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH
T ss_pred HHCCCHHHHHHHhcCCCC-HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc
Confidence 6677776644 33344 888888999999888553 1 124566777777777788888888888888876432
Q ss_pred h--------hhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccC---CchhHHHHHHHHhhhcCCCCChHHHHHHHH
Q psy6009 476 P--------VQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKD---GVMADKVLNLFWSLAHSDDVMTDIMEQALA 544 (866)
Q Consensus 476 ~--------eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al~ 544 (866)
. .-+..|...+. +.++..+...+..+..++..+.. ......++..+-.++.++ .+.+...|+.
T Consensus 225 ~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~ 298 (450)
T 2jdq_A 225 DKIQAVIDAGVCRRLVELLM----HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACW 298 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHC----CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHH
Confidence 1 23344444443 33566778888888888754321 112224677777777764 4677777777
Q ss_pred HHHHHhh
Q psy6009 545 SHLKILD 551 (866)
Q Consensus 545 ~~~~iL~ 551 (866)
.+..+..
T Consensus 299 ~L~~l~~ 305 (450)
T 2jdq_A 299 TISNITA 305 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 7666553
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=44.94 E-value=5e+02 Score=31.51 Aligned_cols=176 Identities=11% Similarity=0.093 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHh
Q psy6009 327 IIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKD 406 (866)
Q Consensus 327 ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~e 406 (866)
.+.+|.+|++-- .+....+++.-.+..+..++.++...-|-+|+.-|..+... .+....++..
T Consensus 601 Al~AL~NLa~~~--d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~---------------~~~~~~~v~~ 663 (810)
T 3now_A 601 SLMALTNLASMN--ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS---------------EDVIKMFEGN 663 (810)
T ss_dssp HHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS---------------HHHHHHHHSS
T ss_pred HHHHHHHHhcCC--HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------------hHHHHHHHhc
Confidence 345667777421 22233456666788899999999998999998888666543 1222333322
Q ss_pred chhHHHH---hcCCCChHHHHHHHHHHHHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccC-hhhHHHH
Q psy6009 407 NNVLEIV---LRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFS-PVQLDHL 482 (866)
Q Consensus 407 n~Ile~l---lg~nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~-~eqL~~L 482 (866)
.+.+..| ++. -. .++-+.+.-.+.. ++.+ ++...++| ++ ...+..|
T Consensus 664 ~g~l~~Lv~LL~s-~d-~~vq~~Aa~ALan-----------------Lt~~-s~~~~~~i----------i~~~g~I~~L 713 (810)
T 3now_A 664 NDRVKFLALLCED-ED-EETATACAGALAI-----------------ITSV-SVKCCEKI----------LAIASWLDIL 713 (810)
T ss_dssp SSHHHHHHHGGGC-SS-HHHHHHHHHHHHH-----------------HHHH-CHHHHHHH----------HTSTTHHHHH
T ss_pred cCcHHHHHHHhcC-CC-HHHHHHHHHHHHH-----------------HhCC-CHHHHHHH----------HHHcCCHHHH
Confidence 3444432 221 11 2222222222222 2222 11111111 11 2344445
Q ss_pred HHHHHhcccccCHHhhHHHHHHHHHHHHhccC---CchhHHHHHHHHhhhcCCC-CChHHHHHHHHHHHHHhhcc
Q psy6009 483 FVCFQASWTSANRKQTEKLLELIRRLAEDDKD---GVMADKVLNLFWSLAHSDD-VMTDIMEQALASHLKILDYS 553 (866)
Q Consensus 483 f~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~---~~~~~k~L~LlW~L~~~~~-~~~el~~~Al~~~~~iL~~~ 553 (866)
.+.+. +.+.+.+..-...|.+++..+.+ .....-+++.|-+|++.++ -.+++.+.|++.+..++.++
T Consensus 714 v~LL~----s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 714 HTLIA----NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 54444 23567788888888888764321 1112347888999988764 57899999999999999875
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=43.75 E-value=3.7e+02 Score=29.69 Aligned_cols=200 Identities=11% Similarity=0.073 Sum_probs=121.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHh
Q psy6009 327 IIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKD 406 (866)
Q Consensus 327 ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~e 406 (866)
.+.+|.+|+..-+.... ....--+..+.++++++.-+.+..++.-|..++... ....+-+.+
T Consensus 223 a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~---------------~~~~~~~~~ 284 (528)
T 4b8j_A 223 ATWTLSNFCRGKPQPSF---EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT---------------NDKIQAVIE 284 (528)
T ss_dssp HHHHHHHHHCSSSCCCH---HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC---------------HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---------------HHHHHHHHH
Confidence 34455566644332211 122344667777888887777777777776555321 222334455
Q ss_pred chhHHHHhcC--CCChHHHHHHHHHHHHHHHhccC------CChhhHHHHHHHhccC-chHHHHHHHHHHHHHhcccChh
Q psy6009 407 NNVLEIVLRD--SLHQPQYVEKLEKILRFLIKEKA------LSLGDLDAVWAAQAGK-HDAIVKNVHELLAKLAWDFSPV 477 (866)
Q Consensus 407 n~Ile~llg~--nlHq~E~i~rs~~Il~FL~~~~~------lt~~~ld~IW~a~~~K-he~i~~~I~~lL~~la~~l~~e 477 (866)
.+++..+..- +.+ +++...+..+++-|+.... +...-+..+-+.-... ++.++......|..++.. +.+
T Consensus 285 ~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~ 362 (528)
T 4b8j_A 285 AGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKD 362 (528)
T ss_dssp TTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHH
T ss_pred cCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHH
Confidence 5665554321 224 7788888888888765321 1122355566655555 888999998999998863 455
Q ss_pred hHHH---------HHHHHHhcccccCHHhhHHHHHHHHHHHHhcc-C--Cch-hHHHHHHHHhhhcCCCCChHHHHHHHH
Q psy6009 478 QLDH---------LFVCFQASWTSANRKQTEKLLELIRRLAEDDK-D--GVM-ADKVLNLFWSLAHSDDVMTDIMEQALA 544 (866)
Q Consensus 478 qL~~---------Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~-~--~~~-~~k~L~LlW~L~~~~~~~~el~~~Al~ 544 (866)
++.. |++.++. .++..+......|.+++.... . ..+ ...++..|-.++.+. .+++...|+.
T Consensus 363 ~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~ 436 (528)
T 4b8j_A 363 QIQAVINAGIIGPLVNLLQT----AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP--DIRIVTVCLE 436 (528)
T ss_dssp HHHHHHHTTCHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHH
Confidence 4443 4444433 256788888889999987621 1 111 234567777777764 4678888998
Q ss_pred HHHHHhhc
Q psy6009 545 SHLKILDY 552 (866)
Q Consensus 545 ~~~~iL~~ 552 (866)
.+..|+..
T Consensus 437 ~L~~l~~~ 444 (528)
T 4b8j_A 437 GLENILKV 444 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 23
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=36.47 E-value=1.6e+02 Score=30.62 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhcccc--------------chhhh--hHHHHHHHHhhhhcccCCC
Q psy6009 325 SVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISS--------------FNGKM--NALNEVNKVIAGVAYYPHR 388 (866)
Q Consensus 325 ~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~--------------l~~R~--~gL~ei~~~i~~~~~~~~~ 388 (866)
+.|+...=.|...+++...+.+-+...+-+++.+.|.++. =..++ .|++|+..+.....+|++.
T Consensus 48 SQIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n~s~~K~~df~~l~k~~v~d~~vQrkAi~EL~~VM~~sG~y~q~ 127 (258)
T 1fyh_A 48 SQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAELGANVSG 127 (258)
T ss_dssp HHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHcCcccch
Confidence 3444433344455565556666677777777777775542 12233 4899999988887776651
Q ss_pred ----------------C---CCccCCcHHHHHHHH
Q psy6009 389 ----------------H---PEEEWLTPDRMAKWI 404 (866)
Q Consensus 389 ----------------~---~~~~~~~~~~l~~WL 404 (866)
+ .+...+..+.+.+|=
T Consensus 128 ~~~keIe~LK~yfNasn~Dv~dggplFl~ilknwk 162 (258)
T 1fyh_A 128 EFVKEAENLKKYFNAGHSDVADNGTLFLGILKNWK 162 (258)
T ss_dssp HHHHHHHHHHHHHC-------CCCCSSHHHHHHCC
T ss_pred hHHHHHHHHHHHhccCCccccCCCcchHHhhhhhh
Confidence 1 356678889998884
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=36.14 E-value=2.9e+02 Score=34.53 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=53.1
Q ss_pred HHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCC--------chhHH
Q psy6009 449 WAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDG--------VMADK 520 (866)
Q Consensus 449 W~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~--------~~~~k 520 (866)
++.-..+++.++.+-...|..++..+..+++.++...+-....+.++..|......+..++...... .....
T Consensus 54 l~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~ 133 (1230)
T 1u6g_C 54 LKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK 133 (1230)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH
Confidence 3333455666666666666666666666666666655555444434445665566666665443221 12334
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy6009 521 VLNLFWSLAHSDDVMTDIMEQALASHLKIL 550 (866)
Q Consensus 521 ~L~LlW~L~~~~~~~~el~~~Al~~~~~iL 550 (866)
++..+...+.+ .-.++..+.|+..+.+++
T Consensus 134 llp~L~~~l~~-~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 134 ITGRLTSAIAK-QEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHSC-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCchHHHHHHHHHHHHHH
Confidence 55555555543 123455566666555555
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=34.75 E-value=4.4e+02 Score=27.93 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhcc-C--CchhHHHHHHHHhhhcCCC
Q psy6009 457 DAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK-D--GVMADKVLNLFWSLAHSDD 533 (866)
Q Consensus 457 e~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~-~--~~~~~k~L~LlW~L~~~~~ 533 (866)
..++.+..+.|..++..+...-+..++..+...-.+.+.+.|+-.+..++.+++... + ......++..+-.++.++.
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 421 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467888899999999999877777788888776656677889999999999987543 1 1223457777777777653
Q ss_pred CChHHHHHHHHHHHHHhh
Q psy6009 534 VMTDIMEQALASHLKILD 551 (866)
Q Consensus 534 ~~~el~~~Al~~~~~iL~ 551 (866)
+.+...|...+..+..
T Consensus 422 --~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 422 --VVVRDTAAWTVGRICE 437 (462)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 6777777766655553
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=33.76 E-value=5.3e+02 Score=28.64 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=102.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHh
Q psy6009 327 IIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKD 406 (866)
Q Consensus 327 ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~e 406 (866)
...+|.+|++.- .+.....++.=-+..+.++++++..+.|-.|+.-|..+.... ....+-+.+
T Consensus 121 Aa~aL~nias~~--~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~---------------~~~r~~v~~ 183 (510)
T 3ul1_B 121 SAWALTNIASGT--SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG---------------SAFRDLVIK 183 (510)
T ss_dssp HHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---------------HHHHHHHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---------------HHHHHHHHH
Confidence 344667777422 333334555556889999999999999999988887776531 234455666
Q ss_pred chhHHHHhc---C-C--CChHHHHHHHHHHHHHHHhccCCCh------hhHHHHHHHhccCchHHHHHHHHHHHHHhccc
Q psy6009 407 NNVLEIVLR---D-S--LHQPQYVEKLEKILRFLIKEKALSL------GDLDAVWAAQAGKHDAIVKNVHELLAKLAWDF 474 (866)
Q Consensus 407 n~Ile~llg---~-n--lHq~E~i~rs~~Il~FL~~~~~lt~------~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l 474 (866)
.|.+..++. . + .....+...+...+.-++..+.-.. .-+..+.+.-...++.++......|..++..-
T Consensus 184 ~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263 (510)
T ss_dssp TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch
Confidence 666555432 1 1 1113444555555555554332111 12334555555666666666666666665422
Q ss_pred C--------hhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccC---CchhHHHHHHHHhhhcCCCCChHHHHHHH
Q psy6009 475 S--------PVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKD---GVMADKVLNLFWSLAHSDDVMTDIMEQAL 543 (866)
Q Consensus 475 ~--------~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~---~~~~~k~L~LlW~L~~~~~~~~el~~~Al 543 (866)
+ ..-+..|.+++.. .+...+...+..++.++..+.. ......++..|..|+.++ .+++...|.
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~v~~~A~ 337 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEAT 337 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS--SHHHHHHHH
T ss_pred hhhHHHHHhcccchhhhhhhcC----CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC--CHHHHHHHH
Confidence 1 1112333333332 2344555566666666532211 111112333344444322 345555555
Q ss_pred HHHHHHh
Q psy6009 544 ASHLKIL 550 (866)
Q Consensus 544 ~~~~~iL 550 (866)
-.+..|.
T Consensus 338 ~aL~nl~ 344 (510)
T 3ul1_B 338 WTMSNIT 344 (510)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555544
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=33.74 E-value=3.3e+02 Score=26.15 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHH
Q psy6009 347 QLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYV 424 (866)
Q Consensus 347 ~~~~~~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i 424 (866)
.++.--+..+.++++++.-+.|..|+.-+..++... ....+-+.+.++++.++.- +-+ +++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~~~~~~~i~~L~~~l~~~~-~~~~ 145 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---------------DEAIKAIVDAGGVEVLVKLLTSTD-SEVQ 145 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHTTHHHHHHHHTTCSC-HHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHCCCHHHHHHHHcCCC-HHHH
Confidence 344456778889999988888888888887666421 2334445666766664421 234 8888
Q ss_pred HHHHHHHHHHHhccC------CChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHH-----HHHHhccccc
Q psy6009 425 EKLEKILRFLIKEKA------LSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLF-----VCFQASWTSA 493 (866)
Q Consensus 425 ~rs~~Il~FL~~~~~------lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf-----~~~~~~~~~~ 493 (866)
..+...+.-|+.... ....-+..+-+.....++.++......|..++.. +++....+. ..+...-.+.
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~ 224 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTST 224 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCC
Confidence 899999988875321 1123456666666778888888888888888852 333332221 2222222223
Q ss_pred CHHhhHHHHHHHHHHHHhc
Q psy6009 494 NRKQTEKLLELIRRLAEDD 512 (866)
Q Consensus 494 s~~~r~~ll~lI~~la~~~ 512 (866)
++..++.....+.+++...
T Consensus 225 ~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 4455666666666665544
No 28
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=32.83 E-value=6.1e+02 Score=29.00 Aligned_cols=236 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhhhhhhhhhcChHHHHhhhhHHHHHHHHHHhcCChHHHHHHhhhhccchhHHHHHHHH
Q psy6009 204 QILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSC 283 (866)
Q Consensus 204 ~~il~~~~~~~~~~~~~i~~~l~~~~~~~~~L~~~~i~~y~~p~~~~v~~~l~~l~d~eLk~~~~~~~~~d~~~~i~~~~ 283 (866)
+.+.+.+|..+...+..++.-+ .+.+...-.-.+..++..+.+ +|+..|...-+
T Consensus 103 DvL~QlLqtdd~~E~~~V~~sL-----------~sllk~Dpk~tl~~lf~~i~~-~~e~~Rer~lk-------------- 156 (507)
T 3u0r_A 103 DILTQLLQTDDSAEFNLVNNAL-----------LSIFKMDAKGTLGGLFSQILQ-GEDIVRERAIK-------------- 156 (507)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHH-----------HHHHHHCHHHHHHHHHHHHHH-SCHHHHHHHHH--------------
T ss_pred HHHHHHHhccchHHHHHHHHHH-----------HHHHhcChHHHHHHHHHHHcc-cchHHHHHHHH--------------
Q ss_pred hhhhhcCCCCCCccchhhhhhhhchHHHHHhhhhcchhhhHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHHhccc
Q psy6009 284 KLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQIS 363 (866)
Q Consensus 284 ~~l~~~~~~~~d~~~~~~~~~~~~~e~~~~~~~~~s~~d~~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrllkss 363 (866)
.+-+-+..++++.+++|. -..|+..++.++.-+.+. ++.+++.++++-
T Consensus 157 --------------Fi~~kl~~l~~~~l~~E~--------E~~i~~~ikK~L~DVT~~----------EF~L~m~lL~~l 204 (507)
T 3u0r_A 157 --------------FLSTKLKTLPDEVLTKEV--------EELILTESKKVLEDVTGE----------EFVLFMKILSGL 204 (507)
T ss_dssp --------------HHHHHGGGSCTTTSCHHH--------HHHHHHHHHHHTTSCCHH----------HHHHHHHHHHTS
T ss_pred --------------HHHHHHhhcchhhccHHH--------HHHHHHHHHHHhccccHH----------HHHHHHHHHHhc
Q ss_pred cchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHHhccCCChh
Q psy6009 364 SFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLG 443 (866)
Q Consensus 364 ~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~~~~~lt~~ 443 (866)
.+-+-+.|..++.+++....... ..-...+.+.+-.++.=-.----+|..+.| |+.++.|+ .+
T Consensus 205 kl~~t~~g~qeLv~ii~eQa~L~---~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~-------StkFv~y~-------~~ 267 (507)
T 3u0r_A 205 KSLQTVSGRQQLVELVAEQADLE---QTFNPSDPDCVDRLLQCTRQAVPLFSKNVH-------STRFVTYF-------CE 267 (507)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTTT---SCCCSSCHHHHHHHHHHHHHHGGGCBTTBC-------CHHHHHHH-------HH
T ss_pred ccccCchHHHHHHHHHHHHHhcc---CCCCCcCHHHHHHHHHHHHHHHHHhccCCC-------hHHHHHHH-------HH
Q ss_pred hHHHHHH-HhccCchH-HHHHHHHHHHHHhcccC-----hhhHHHHHHHHHhcccccCHHhh-----------------H
Q psy6009 444 DLDAVWA-AQAGKHDA-IVKNVHELLAKLAWDFS-----PVQLDHLFVCFQASWTSANRKQT-----------------E 499 (866)
Q Consensus 444 ~ld~IW~-a~~~Khe~-i~~~I~~lL~~la~~l~-----~eqL~~Lf~~~~~~~~~~s~~~r-----------------~ 499 (866)
++=-.|+ ++++-.+. .+-.+.+++++++++-. .+-|..+|+.+..-.+.-+.... |
T Consensus 268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vE 347 (507)
T 3u0r_A 268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVE 347 (507)
T ss_dssp HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHH
T ss_pred hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHH
Q ss_pred HHHHHHHHHHHhccC
Q psy6009 500 KLLELIRRLAEDDKD 514 (866)
Q Consensus 500 ~ll~lI~~la~~~~~ 514 (866)
-||-...+++....+
T Consensus 348 CLLy~fH~L~~k~P~ 362 (507)
T 3u0r_A 348 CLLYSFHQLGRKLPD 362 (507)
T ss_dssp HHHHHHHHHHTTCTH
T ss_pred HHHHHHHHHhhhChh
No 29
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=32.11 E-value=5.4e+02 Score=28.23 Aligned_cols=107 Identities=17% Similarity=-0.008 Sum_probs=76.9
Q ss_pred hhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhh-HHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhHHH
Q psy6009 443 GDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQ-LDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKV 521 (866)
Q Consensus 443 ~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eq-L~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~k~ 521 (866)
.-+..+-+.-...+..++.+....+..++..+..+. +..++..+.....+.+...|...+..+..+++..........+
T Consensus 441 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~ 520 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHM 520 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344555556667788899999999999988887763 3556666665555556778888999999888765433345567
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhh
Q psy6009 522 LNLFWSLAHSDDVMTDIMEQALASHLKILD 551 (866)
Q Consensus 522 L~LlW~L~~~~~~~~el~~~Al~~~~~iL~ 551 (866)
+..+..++.|++ +++...|+..+..+..
T Consensus 521 ~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 521 LPTVLRMAGDPV--ANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHHGGGCSC--HHHHHHHHHHHHHHGG
T ss_pred HHHHHhhCCCCC--chHHHHHHHHHHHHHH
Confidence 788888877653 6787888888777765
No 30
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.79 E-value=3.9e+02 Score=27.05 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=94.5
Q ss_pred hccccchhhhhHHHHHHHHhhhhcccCCCCC--CccCCcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHHhc
Q psy6009 360 LQISSFNGKMNALNEVNKVIAGVAYYPHRHP--EEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKE 437 (866)
Q Consensus 360 lkss~l~~R~~gL~ei~~~i~~~~~~~~~~~--~~~~~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~~~ 437 (866)
+.|.....|+.|+.++.+.+..........+ ..-+-...-+...+.+.+ +..+..+-.++.-++..
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN------------~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN------------VVAQEQAIVALNSLIDA 85 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS------------HHHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHHHHHHHH
Confidence 6788999999999999988876421100000 000111222333333333 55666666666655542
Q ss_pred cCCC-------hhhHHH-HHHHhc----cCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHH
Q psy6009 438 KALS-------LGDLDA-VWAAQA----GKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELI 505 (866)
Q Consensus 438 ~~lt-------~~~ld~-IW~a~~----~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI 505 (866)
-... ...... +..+-+ ..-..++....+.+..++..-.+ ...+++.+.....+-+++.+..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 86 FASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 2111 112222 222221 23455666666666666543322 223445555555556889999999999
Q ss_pred HHHHHhccCCchh-----HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhc
Q psy6009 506 RRLAEDDKDGVMA-----DKVLNLFWSLAHSDDVMTDIMEQALASHLKILDY 552 (866)
Q Consensus 506 ~~la~~~~~~~~~-----~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~ 552 (866)
.++.+......+. ..++..+..++. +..+++-+.|..-+.++-++
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~--d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPELLKHVPQLAG--HGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHGGGHHHHHT--CSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHH
Confidence 9988775322221 123444444443 45578888888887777653
No 31
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=25.43 E-value=6e+02 Score=26.54 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhccCchHHHHHHHHHHHHHhc--ccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhH
Q psy6009 442 LGDLDAVWAAQAGKHDAIVKNVHELLAKLAW--DFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMAD 519 (866)
Q Consensus 442 ~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~--~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~ 519 (866)
.+++|.|=.++..+++.+.-.=.+.|..|-. -+++++..-+-+-+.....+-++-.++...+.++.+ +--....
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~ 149 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSK 149 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchH
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhcc
Q psy6009 520 KVLNLFWSLAHSDDVMTDIMEQALASHLKILDYS 553 (866)
Q Consensus 520 k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~ 553 (866)
++.+.+-+|+ ..-.+++...|+..+.+|-.++
T Consensus 150 ~V~~~l~sLl--~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 150 LVRTYINELV--VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHH--TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHH--hCCChhHHHHHHHHHHHhhccc
No 32
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=23.56 E-value=5.1e+02 Score=25.12 Aligned_cols=121 Identities=11% Similarity=0.214 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHH---hccccchhh-hhHHHHHHHHhhh-----hcccCCCCCC
Q psy6009 321 NDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRL---LQISSFNGK-MNALNEVNKVIAG-----VAYYPHRHPE 391 (866)
Q Consensus 321 ~d~~~~ilk~l~~L~~r~~~~~~~~~~~~~~~L~~~lrl---lkss~l~~R-~~gL~ei~~~i~~-----~~~~~~~~~~ 391 (866)
.|..++++..+..++....+...-++-+.+.=.+++.|+ ++..+|+.- +..+.++.+-++. +++|. .
T Consensus 9 DdtsselLD~lyrl~K~~t~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~e----V 84 (161)
T 3f4m_A 9 DETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGE----V 84 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTS----T
T ss_pred CccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc----c
Confidence 456788888888888777665555666677777777776 677777652 3344445444443 23332 3
Q ss_pred ccCCcHHHHHHHHHh-chhHHHHhcCCCChHHHHHHHHHHHHHHHhccCCChhhHHHHHHH
Q psy6009 392 EEWLTPDRMAKWIKD-NNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAA 451 (866)
Q Consensus 392 ~~~~~~~~l~~WL~e-n~Ile~llg~nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~a 451 (866)
+-......|.+=|.| ...+--+.++.+- +-=..|...++.|+. +.+-++.+|+-
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~~HLT-~KS~~Ri~~vF~~f~-----~~efL~~lf~~ 139 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVEHHLT-PKSHGRIRHVFDHFS-----DPGLLTALYGP 139 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHT-----CHHHHHHHTSG
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhC-----CHHHHHHHhCc
Confidence 334455667777764 5677778888888 888899999999994 57888999986
No 33
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.22 E-value=2.8e+02 Score=31.90 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHhchhHHHHhcCCCChHHHHHHHHHHHHHHHhccCCChhhHHHHHH--HhccCchHHHHHHHHHHHHHhc
Q psy6009 395 LTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWA--AQAGKHDAIVKNVHELLAKLAW 472 (866)
Q Consensus 395 ~~~~~l~~WL~en~Ile~llg~nlHq~E~i~rs~~Il~FL~~~~~lt~~~ld~IW~--a~~~Khe~i~~~I~~lL~~la~ 472 (866)
+.-..|-+||.++|.-+.||.=+.= -|..||-....-+.++.|++|+ +..++|-.-.+..+.|-.+ ..
T Consensus 179 lFH~~LYdWli~~gl~d~LL~i~sP---------fle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~ 248 (525)
T 3i5p_A 179 LFHYHMYDWLVSQNREEKLLDIETP---------FILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS-NF 248 (525)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGCCCT---------THHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-SS
T ss_pred HHHHHHHHHHHhCCCcchhhcCCCc---------hHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC-CC
Confidence 4456799999999999999986532 2667886655556789999999 6667887776666666555 44
Q ss_pred ccChhh-HHHHHHHH
Q psy6009 473 DFSPVQ-LDHLFVCF 486 (866)
Q Consensus 473 ~l~~eq-L~~Lf~~~ 486 (866)
.++.++ ++||=.-+
T Consensus 249 ~i~L~~RIeyLsrA~ 263 (525)
T 3i5p_A 249 DITLFERIEFLSRAN 263 (525)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 556554 55544333
No 34
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=21.73 E-value=9.9e+02 Score=27.75 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhcc-C--CchhHHHHHHHHhhhcCC
Q psy6009 456 HDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK-D--GVMADKVLNLFWSLAHSD 532 (866)
Q Consensus 456 he~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~-~--~~~~~k~L~LlW~L~~~~ 532 (866)
+..++++..+.+..++..+..+-+..++..+.....+.+.+.|+-.+..++.+++... + .......+..+...+.++
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567788888888888888777777888777766555667889999999988886543 1 112234566666666654
Q ss_pred CCChHHHHHHHHHHHHHhh
Q psy6009 533 DVMTDIMEQALASHLKILD 551 (866)
Q Consensus 533 ~~~~el~~~Al~~~~~iL~ 551 (866)
.+.+...|...+..+..
T Consensus 421 --~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 421 --SVVVRDTAAWTVGRICE 437 (876)
T ss_dssp --SHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 36677776666555554
No 35
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=20.08 E-value=7.8e+02 Score=25.89 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccc-----ChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhcc---CCchhHHHHHHHHhhhcCC
Q psy6009 461 KNVHELLAKLAWDF-----SPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK---DGVMADKVLNLFWSLAHSD 532 (866)
Q Consensus 461 ~~I~~lL~~la~~l-----~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~---~~~~~~k~L~LlW~L~~~~ 532 (866)
+.+-..++.||... -++-+..|++.++... .++..|+-.+..++.+.++.. .......++..+-.++.++
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 184 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN--STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE 184 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC
Confidence 44555566665532 2455666776665421 146788999999999998652 1333456788888888877
Q ss_pred CCChHHHHHHHHHHHHHhhccCccchh-hHHHHHHHHHHHHhhcC-CCc-hhhhHHHHHHHHHhhc
Q psy6009 533 DVMTDIMEQALASHLKILDYSCSQERD-KQKTIWLQTCIEEFKSN-PKW-VVPALRQIKDICCLYE 595 (866)
Q Consensus 533 ~~~~el~~~Al~~~~~iL~~~~~~~~~-~~k~~yl~kCie~Ik~~-~~s-vl~SLrli~~I~~l~~ 595 (866)
..++++...|+.++..++.+. ....+ ..-..|+...+.....+ +.. ...+++.+..++..++
T Consensus 185 ~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 185 EPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp CCCHHHHHHHHHHHHHHTTTT-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 657889999999988877531 00011 11234544444433332 211 2236666777766653
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.01 E-value=1.1e+03 Score=27.68 Aligned_cols=88 Identities=10% Similarity=-0.030 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccC--CchhHHHHHHHHhhhcCCCC
Q psy6009 457 DAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKD--GVMADKVLNLFWSLAHSDDV 534 (866)
Q Consensus 457 e~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~--~~~~~k~L~LlW~L~~~~~~ 534 (866)
-+++++-...|..++..+..+-+..++..+...-.+.+.+.|+-.+..++.+++.... ......++..+-.++.|+
T Consensus 335 ~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-- 412 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-- 412 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--
Confidence 3568888889999998888777788888887776666788899999999999876532 223345677777777655
Q ss_pred ChHHHHHHHHHH
Q psy6009 535 MTDIMEQALASH 546 (866)
Q Consensus 535 ~~el~~~Al~~~ 546 (866)
.+.+...|...+
T Consensus 413 ~~~Vr~~a~~~l 424 (852)
T 4fdd_A 413 KALVRSITCWTL 424 (852)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555554443
Done!