RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6009
(866 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 1e-13
Identities = 90/617 (14%), Positives = 189/617 (30%), Gaps = 166/617 (26%)
Query: 78 DVDSEPCQRFFREGLSIS-FTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVF 136
+ D + Q + LS I+ S + + + +++++ V ++ + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 137 PLL-----------DILTMVFNPC-NKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYK 184
L ++T ++ ++ +N NQ V+ R Y
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVS----------RL-QPYL 138
Query: 185 NQRGWLVDL-----INLFGSMGGFQILLERFQNKSTLTIPVIFA---LIRPFGQVHEYLT 236
R L++L + + G + G K+ + + V + + ++ +L
Sbjct: 139 KLRQALLELRPAKNVLIDG-VLGS--------GKTWVALDVCLSYKVQCKMDFKIF-WLN 188
Query: 237 -------------LPTILKYFMPILEIVPEILENLTD--EELKKEAKN--ESKNDAISVI 279
L +L P + N+ ++ E + +SK ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 280 I--------------KSCKLL--------AARVPHQEDTEI-VPEILENLTDEELKKE-A 315
+ SCK+L + T I + LT +E+K
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 316 K--NESKND----AISVIIKSCKLLAARV---PHQEDTVKQLEIFRLKIILRLLQISSFN 366
K + D ++ + ++A + D K + +L I I S
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESS- 362
Query: 367 GKMNALNEVNKVIAGVAYYPHRH--------PEEEWLTPDRMAK-W--IKDNNVLEIVLR 415
+N L +R P + ++ W + ++V+ +V
Sbjct: 363 --LNVLEPAE----------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-- 408
Query: 416 DSLHQPQYVEKLEK-----I--LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLA 468
+ LH+ VEK K I + +K K + L H +IV + +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----------HRSIVDHYNIPKT 458
Query: 469 KLAWDFSPVQLD---------HLFVCFQASWTSANRKQTEKLLE---LIRRLAEDDKDGV 516
+ D P LD HL + R L+ L +++ D
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFLEQKIRHDSTAWN 515
Query: 517 MADKVLNLFWSLAHSDDVMTD---IMEQALASHLKILDYSCSQE--RDKQKTIWLQTCIE 571
+ +LN L + D E+ + + L L + K + L+ +
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKYTDL-LRIAL- 572
Query: 572 EFKSNPKWVVPALRQIK 588
+ A +Q++
Sbjct: 573 -MAEDEAIFEEAHKQVQ 588
Score = 59.9 bits (144), Expect = 3e-09
Identities = 61/502 (12%), Positives = 133/502 (26%), Gaps = 150/502 (29%)
Query: 431 LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASW 490
+ F E D+ +V+ A + K+V ++ + S ++DH+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSI---LSKEEIDHIIM------ 56
Query: 491 TSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDD---VMTDIMEQALASHL 547
+ T +L + E +++ F + +M+ I + +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 548 KILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDI-CCLYE--PGQNLNSH- 603
Y ++RD+ L + F K+ V L+ + L E P +N+
Sbjct: 108 MTRMYI--EQRDR-----LYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 604 ---------APLSSRSH-------------SSNNRQSIIDILIKNHSLIMLITNNLCSLL 641
A S+ + N S +L L+ I N S
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 642 QISSFNGKMNALNEVNKVIAGVAYYPHRHPE-----------EEW-----------LTPD 679
SS N K+ ++ + + + + + W T
Sbjct: 218 DHSS-NIKLR-IHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 680 RQLT-------------ESGLKCFEK------FFKSVNIGEGKLVLKVKKRSLLLDNADL 720
+Q+T + K ++ L +V + +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSI 332
Query: 721 IGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRL----- 775
I +++ + + I L+ L
Sbjct: 333 IAE--------------------SIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEY 371
Query: 776 RAHYDTIGLSHTYRPILPEARQI--------WTALAQEAIFH-----CDREACFKWFSKL 822
R +D + + P + I W + + + K +
Sbjct: 372 RKMFDRLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 823 MTDEPDLDPKMMKDFFEKHVLH 844
P + ++ ++ LH
Sbjct: 425 TISIPSIYLELKVKLENEYALH 446
Score = 31.4 bits (70), Expect = 1.6
Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 41/227 (18%)
Query: 665 YYPHRHPEEEWLTPD---RQLTESGLKCFEKFFKSVNIGEG-KLVLKVKK-RSLLLDNAD 719
++ H H + E + + F F ++ + K +L ++ +++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 720 LIGAEYLWRVITNAGEDIAFRAI-DLLKEVSTHLGPKLQSSLTQ---FHKTFIAECLDRL 775
+ G L+ + + E++ + + ++L+ L +++ Q + +I E DRL
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRL 119
Query: 776 RAHYDTIGLSHTYRPILPEARQIW--------------------TALAQEAIFHCDREAC 815
+ R + T +A + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 816 FK----WFSKLMTDEPDLDPKMMKDF-------FEKHVLHFEPIPHR 851
W + + P+ +M++ + H I R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 4e-08
Identities = 91/542 (16%), Positives = 149/542 (27%), Gaps = 198/542 (36%)
Query: 431 LRFLIKEKALSLGDLDAVWAAQAGKH-------DAIVKNVHELLAKLAWDFSPVQLDHLF 483
R L LS G L+ V + K + E A D P L
Sbjct: 6 TRPLT----LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 484 VCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAH-SDDVM--TDIME 540
F L + L E K G D+VLNL L + + DI
Sbjct: 62 GKF---------------LGYVSSLVEPSKVGQF-DQVLNL--CLTEFENCYLEGNDI-- 101
Query: 541 QALASHLKILDYSCSQERDKQKTI---WLQTCIEEFKSNPKWVVPAL-RQIKD----ICC 592
ALA+ L K K + ++ I + K AL R + + +
Sbjct: 102 HALAAKL---LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 593 LYEPGQNLNSHAP---LSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGK 649
++ GQ N+ L + ++ LIK + L L++ +
Sbjct: 159 IF-GGQG-NTDDYFEELRDLYQTY---HVLVGDLIKFSA------ETLSELIRTTL---- 203
Query: 650 MNALNEVNKVIAGVAYYPHRHPEEEWL-----TPDR-------------QLTESGLKCFE 691
+ K + EWL TPD+ + + L +
Sbjct: 204 -----DAEK------VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYV 250
Query: 692 KFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGE-----DIAFRAIDLLK 746
K + G+L + + + L+ A I +AI +L
Sbjct: 251 VTAKLLGFTPGELRSYL--KGATGHSQGLVTA----VAIAETDSWESFFVSVRKAITVL- 303
Query: 747 EVSTHLG-------------PK-LQSSLTQ-------------FHKTFIAECLDRLRAHY 779
+G P L+ SL + + + +++ +H
Sbjct: 304 ---FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH- 359
Query: 780 DTIGLSHTYRPILPEARQIWTALA--------------------------------QEAI 807
LP +Q+ +L Q I
Sbjct: 360 ------------LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 808 FHCDREACFKW-F--------SKLMTDEPDLDPKMMKDFFEKHVLHFEP----IPHRETL 854
+R+ F F S L+ DL + KD + +V F IP +T
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDL---INKDLVKNNVS-FNAKDIQIPVYDTF 463
Query: 855 SG 856
G
Sbjct: 464 DG 465
Score = 55.1 bits (132), Expect = 1e-07
Identities = 85/546 (15%), Positives = 154/546 (28%), Gaps = 204/546 (37%)
Query: 387 HRHPEEEWLTPDRMAKWIKDNNVLEIVLRD----SLHQPQY-----------VEKLEKIL 431
H E L P + + L++ L +P E + K L
Sbjct: 13 HGSLEHVLLVPTAS--FFIAS-----QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 432 RFLIKEKALSLGDLDAVWAAQAGKHDAIVK--------------NVHELLAKLAWDFSPV 477
++ V ++ G+ D ++ ++H L AKL +
Sbjct: 66 GYVSSL----------VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 478 QLDHLFVC---FQAS---------------WTSANRKQT----------------EKLLE 503
+ + A + + E+L +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 504 L-----------IRR----LAEDDKDGVMADKV----LNLF-WSLAHSDDV-MTDIMEQA 542
L I+ L+E + + A+KV LN+ W L + + D +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSI 234
Query: 543 LAS----------H----LKILDYSCSQERDKQKTIWLQTCI---------------EEF 573
S H K+L ++ + R K E F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWESF 292
Query: 574 KSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQ-------SIIDILIKN 626
+ + + L I C P +L P S S N + SI ++ +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSL----PPSILEDSLENNEGVPSPMLSISNLTQE- 347
Query: 627 HSLIMLI--TNNLCSL-----LQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPD 679
+ + TN L ++IS NG N V++G P+
Sbjct: 348 -QVQDYVNKTN--SHLPAGKQVEISLVNGAKNL------VVSG-------PPQS------ 385
Query: 680 RQLTESGLKCFEKFFKSVNIGEGKLVLKVK--KRSLLLDNADL-IGA----EYLWRVITN 732
L + G ++ +R L N L + + L
Sbjct: 386 -------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 733 AGED-----IAFRAIDLLKEV-STHLGPKLQ---SSLTQFHKTFIAECLDRLRAHYDTI- 782
+D ++F A D+ V T G L+ S+++ I +C+ RL ++T
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE----RIVDCIIRLPVKWETTT 494
Query: 783 --GLSH 786
+H
Sbjct: 495 QFKATH 500
Score = 49.3 bits (117), Expect = 6e-06
Identities = 39/235 (16%), Positives = 71/235 (30%), Gaps = 65/235 (27%)
Query: 672 EEEWLTPDRQLTESGLKCFE-KFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVI 730
E + Q+ L FE + + +I L + + L+ +LI R++
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 731 TNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTF-----IAECLDRLRAHYDTIGLS 785
R D K+ ++ L + Q F + + LR Y T
Sbjct: 133 AK-------RPFD--KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT---- 179
Query: 786 HTYRPILPE----ARQIWTALAQEAIFHCDREACFKWFSK---LMT--DEPDLDPKMMKD 836
Y ++ + + + + L + K F++ ++ + P P KD
Sbjct: 180 --YHVLVGDLIKFSAETLSELIR------TTLDAEKVFTQGLNILEWLENPSNTPD--KD 229
Query: 837 FFEK--------------------HVLHFEPIPHRETLSG-------LVAADFIS 864
+ +L F P R L G LV A I+
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Score = 46.6 bits (110), Expect = 4e-05
Identities = 54/329 (16%), Positives = 95/329 (28%), Gaps = 134/329 (40%)
Query: 167 NSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIR 226
S A D ++ R D + F GF IL N LT + F +
Sbjct: 1638 TSKAAQD-VWNR-ADNH-------------FKDTYGFSILDIVINNPVNLT--IHFGGEK 1680
Query: 227 PFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLL 286
G+ I + + + I E + D +LK E + N+ +
Sbjct: 1681 --GK--------RIRENYSAM------IFETIVDGKLKTEKIFKEINEHSTSYTFR---- 1720
Query: 287 AARVPHQED----TEIV-PEILENLTD----EELKKEAKNESKNDAISVIIKSCKLLA-- 335
++ T+ P + L + E+LK + +I + A
Sbjct: 1721 -----SEKGLLSATQFTQPALT--LMEKAAFEDLKSKG-----------LIPADATFAGH 1762
Query: 336 -----------ARVPHQEDTVKQLEIFRLKIILRLLQISSF---NGKMNALNEVNKVIAG 381
A V E V+ + +R + + N M A+N
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVF-YRGMTMQVAVPRDELGRSNYGMIAIN-------- 1813
Query: 382 VAYYPHRHPEEEWLTPDRMAKWIKD--------------NNVLEIV---LRDSLHQPQYV 424
P R+A ++EIV + + QYV
Sbjct: 1814 ---------------PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ----QYV 1854
Query: 425 --------EKLEKILRFLIKEKALSLGDL 445
+ + +L F IK + + + +L
Sbjct: 1855 AAGDLRALDTVTNVLNF-IKLQKIDIIEL 1882
Score = 42.0 bits (98), Expect = 0.001
Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 110/253 (43%)
Query: 618 SIIDILIKN-HSLIML--------ITNNLCSLLQISSFNGKMNA---LNEVNKVIAGVAY 665
SI+DI+I N +L + I N +++ + +GK+ E+N+ +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 666 YPHRHPEEE-WLT----PD---------RQLTESGLKCFEKFFK--SVNIGE-------- 701
R + T P L GL + F S+ GE
Sbjct: 1720 ---RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL--GEYAALASLA 1774
Query: 702 GKL----VLK-VKKRSLLLDNA----------------------------------DLIG 722
+ +++ V R + + A + +G
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 723 AEYLWRV-ITN----------AGEDIAFRAIDLLKEVSTHLG------PKLQSSLTQFHK 765
W V I N AG+ RA+D + V + +LQ SL+
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGD---LRALDTVTNVLNFIKLQKIDIIELQKSLS---- 1887
Query: 766 TFIAECLDRLRAH 778
L+ + H
Sbjct: 1888 ------LEEVEGH 1894
Score = 38.9 bits (90), Expect = 0.009
Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 86/235 (36%)
Query: 668 HRHPEEEWLTPDRQ-LTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDN-----ADLI 721
H E L P S L+ E+F K L D+ A+L+
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQ--EQFNKI---------LPEPTEGFAADDEPTTPAELV 61
Query: 722 GAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTF-------------- 767
++L + + + L LT+F +
Sbjct: 62 -GKFL-----------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 768 ------IAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEA------IFHCDREAC 815
+ + + ++ + ++ RP ++ +AL + + A
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAK--RPFDKKSN---SALFRAVGEGNAQLV-----AI 159
Query: 816 F-------KWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPI--PHRETLSGLVAAD 861
F +F +E ++D ++ + + + ETLS L+
Sbjct: 160 FGGQGNTDDYF-----EE-------LRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Score = 33.9 bits (77), Expect = 0.33
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 42/115 (36%)
Query: 714 LLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLD 773
+ + AD + + F +D++ P +LT H F E
Sbjct: 1645 VWNRAD----NHF-------KDTYGFSILDIVIN-----NPV---NLT-IH--FGGEKGK 1682
Query: 774 RLRAHYDTIGLSHTY------RPILPEARQ-----IW---------TALAQEAIF 808
R+R +Y + I E + + T Q A+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Score = 30.8 bits (69), Expect = 2.3
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 47/157 (29%)
Query: 131 LGQ--------DVFPLLDILTMVF-------NPCNKFHTFNSNQQSISVPVNSNIA--DD 173
LG+ DV + ++ +VF + SN I++ A
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 174 EIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVH- 232
E ++ + GWLV+++N + Q V A G +
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVN-YNVENQ-QY--------------VA-A-----GDLRA 1861
Query: 233 -EYLTLPTILKYF--MPILEIVPEILENLTDEELKKE 266
+ +T +L + I +I+ E+ ++L+ EE++
Sbjct: 1862 LDTVT--NVLNFIKLQKI-DII-ELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 38 EKLAILDSKISSSRWVVPVLPEQELECLIKAAIE 71
EK A+ K+ +S + + IKA +E
Sbjct: 18 EKQAL--KKLQAS--LKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 2.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 420 QPQYVEKLEKILRFLIKEKALSLGDLDA 447
+ Q ++KL+ L+ + A +L + A
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-IKA 44
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 31.4 bits (70), Expect = 1.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 662 GVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKS 696
GV YYP P+E W R++ E+GL +
Sbjct: 3 GVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFA 37
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase,
hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp}
PDB: 3tts_A*
Length = 675
Score = 29.9 bits (66), Expect = 4.2
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 655 EVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCF 690
+ K+ G Y P + + R +G+
Sbjct: 5 KFPKIWYGGDYNPEQWDKATMEEDMRMFNLAGIDVA 40
Score = 29.5 bits (65), Expect = 5.3
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 374 EVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQ 422
+ K+ G Y P + + RM + V + Q
Sbjct: 5 KFPKIWYGGDYNPEQWDKATMEEDMRMFNLAGIDVATVNVFSWAKIQRD 53
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum,
structural genom 2, protein structure initiative; 1.85A
{Chlorobaculum tepidum}
Length = 117
Score = 28.3 bits (64), Expect = 4.8
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 735 EDIAFRAIDLLKEV 748
+D+ FRA++ L+
Sbjct: 19 DDMTFRAVNTLRNA 32
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.9 bits (66), Expect = 4.8
Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 11/127 (8%)
Query: 257 NLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAK 316
+L ++EL+ E K + + + A Q + + E+ + +
Sbjct: 21 DLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNET 80
Query: 317 NESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVN 376
+ N+ T +Q R ++ + + N AL V+
Sbjct: 81 DHKTNENGE---------TDDNIETVMTQEQFVKRRRDMLEHINL--AMNESSLALEFVS 129
Query: 377 KVIAGVA 383
+++ V
Sbjct: 130 LLLSSVK 136
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 29.9 bits (66), Expect = 5.4
Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 187 RGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRP------FGQVHEYLTL-PT 239
+ ++V LI S + + K + + I P + +
Sbjct: 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSES 164
Query: 240 ILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIV 299
+ + M IL+++ E + + + ++ + K+ + + +L + + ++ +V
Sbjct: 165 LCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLV 224
Query: 300 PEILENL 306
LE L
Sbjct: 225 HATLETL 231
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 29.6 bits (66), Expect = 5.8
Identities = 49/369 (13%), Positives = 120/369 (32%), Gaps = 55/369 (14%)
Query: 247 ILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLA--ARVPHQED--TEIVPEI 302
+ + + + EL++ +N +D V + L A+V ++ +EI+P
Sbjct: 149 LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208
Query: 303 LENLTDEE----------LKKEAKNESKNDAISVIIKSCKLLA----------------- 335
+DE+ A+ + D ++++ + + A
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268
Query: 336 -ARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEW 394
+ E T L + L++ + A ++V + ++ +
Sbjct: 269 LQKAVGPEITKTDL----VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324
Query: 395 LTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAG 454
+ P + + + D N ++ +L + + L K+ + L ++ AQ
Sbjct: 325 ILPC-IKELVSDANQH---VKSALAS-----VIMGLSPILGKDNTIE--HLLPLFLAQLK 373
Query: 455 KHDAIVK-NVHELLAKLAWDFSPVQL-DHLFVCFQASWTSANRKQTEKLLELIRRLAEDD 512
V+ N+ L + QL L A + ++E + LA
Sbjct: 374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 433
Query: 513 KDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEE 572
+K+ +L + D + I E A ++ K+++ + + +
Sbjct: 434 GVEFFDEKLNSLCMAWL--VDHVYAIREAATSNLKKLVEKFGKEWAHAT----IIPKVLA 487
Query: 573 FKSNPKWVV 581
+P ++
Sbjct: 488 MSGDPNYLH 496
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 29.1 bits (66), Expect = 6.4
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 14/72 (19%)
Query: 240 ILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQE-DTEI 298
+ E + + L + ++A+ ++ D
Sbjct: 66 MFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLL-------------NMLDKSQ 112
Query: 299 VPEILENLTDEE 310
+ L L+ EE
Sbjct: 113 KAKYLSLLSSEE 124
Score = 28.4 bits (64), Expect = 9.5
Identities = 7/75 (9%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 253 EILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELK 312
+ ++L +++ + S + + ++ +ED E + + L +
Sbjct: 41 QFYQSLDEKDRQHLYNYLSPKELADMF----DVI------EEDNENMKDYLAEMRPSYAA 90
Query: 313 KEAKNESKNDAISVI 327
++A+ ++
Sbjct: 91 DMLAEMYTDNAVDLL 105
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast
structural genomics consortium, BTR28, methyltrans PSI;
2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Length = 242
Score = 28.7 bits (65), Expect = 6.4
Identities = 1/48 (2%), Positives = 12/48 (25%), Gaps = 14/48 (29%)
Query: 732 NAGEDIAFRAIDLLKEVS--------------THLGPKLQSSLTQFHK 765
+ + ++++ + + ++ F+
Sbjct: 16 PLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYP 63
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 29.2 bits (65), Expect = 7.1
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 206 LLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPI-LEIVPEILENLTDEELK 264
ERF+ S +++ + P G++ +Y ++ IL F + LE + +++++
Sbjct: 540 FYERFKLISPISLMNM-VAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQW 598
Query: 265 KEAKNESKNDAISVII 280
+ K + I +II
Sbjct: 599 EVEKYSFQVKFIKMII 614
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 28.8 bits (64), Expect = 8.4
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 811 DREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETL 854
DR F+ +L D + + +KDFF H + H +
Sbjct: 220 DRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDHVVEVEHEFYV 263
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,547,156
Number of extensions: 841047
Number of successful extensions: 2113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2093
Number of HSP's successfully gapped: 35
Length of query: 866
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 764
Effective length of database: 3,853,851
Effective search space: 2944342164
Effective search space used: 2944342164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.4 bits)