RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6009
(866 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 35.9 bits (82), Expect = 0.021
Identities = 42/407 (10%), Positives = 123/407 (30%), Gaps = 55/407 (13%)
Query: 250 IVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDE 309
E+ E E+ K D + + +S L R+ P+++
Sbjct: 131 GSREMAE-AFAGEIPK---ILVAGDTMDSVKQSAALCLLRLYR-----TSPDLVPMGDWT 181
Query: 310 ELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKM 369
N+ ++ LA + P + T L + RL I+ +
Sbjct: 182 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTY 241
Query: 370 NALNEVNKVIAGV----AYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVE 425
+ + + Y P P + + + + +
Sbjct: 242 YFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN-- 299
Query: 426 KLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVC 485
++ E + D+ + + +V+ ++L L + ++ L
Sbjct: 300 -------AVLFEAISLIIHHDS-------EPNLLVRACNQLGQFLQHRETNLRYLALESM 345
Query: 486 FQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALAS 545
+ + + + + +E + + ++D + + ++L +++ + I+ +
Sbjct: 346 CTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ-QIVAE---- 400
Query: 546 HLKILDYSCSQERD-KQKTIW-LQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSH 603
+L Y + + +++ + + E++ + W V + + + G ++
Sbjct: 401 ---MLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNL-----IRIAGDYVSEE 452
Query: 604 APLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKM 650
+I I+I + + LQ + + +
Sbjct: 453 V-----------WYRVIQIVINRDDVQGYAAKTVFEALQAPACHENL 488
Score = 28.6 bits (63), Expect = 3.5
Identities = 46/391 (11%), Positives = 110/391 (28%), Gaps = 64/391 (16%)
Query: 31 CTCKFPVEKLAILDSKISSSRWVVPVLPEQ---ELECLIKAAIELCKTNSDVDSEPCQRF 87
+ + +L + + + ++ AA L T + + E +
Sbjct: 158 QSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 217
Query: 88 FREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQ-KLLELIVLKLGQDVFPLLDILTMVF 146
+S ++I+T + Y + KLL L+ + + LT
Sbjct: 218 VSLAVSR-LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECL 276
Query: 147 NPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQIL 206
+ + N+ A I ++ ++ LV N L
Sbjct: 277 ETILNKAQEPPKSKKVQH-SNAKNAVLFEAISLIIHHDSEPNLLVRACN---------QL 326
Query: 207 LERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKE 266
+ Q++ T + + + + + ++
Sbjct: 327 GQFLQHRETNLRYLALESMCTLASSEF--SHEAVKTHIETVIN----------------- 367
Query: 267 AKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLT--DEELKKEAKNESKNDAI 324
+SV ++ LL A +IV E+L L D +++E
Sbjct: 368 --ALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREE---------- 415
Query: 325 SVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAY 384
I+ +LA + + IL L++I+ V +++
Sbjct: 416 --IVLKVAILAEKYAVDYTWY-------VDTILNLIRIAGDYVSEEVWYRVIQIVI---- 462
Query: 385 YPHRHPEEEWLTPDRMAKWIKDNNVLEIVLR 415
+ + + + ++ E +++
Sbjct: 463 ---NRDDVQGYAAKTVFEALQAPACHENLVK 490
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 29.6 bits (65), Expect = 1.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 381 GVAYYPHRHPEEEWLTPDRMAKWIKDNNV 409
GV YYP P+E W A+ +++ +
Sbjct: 3 GVCYYPEHWPKERW---KEDARRMREAGL 28
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 662 GVAYYPHRHPEEEWLTPDRQLTESGLKCF 690
GV YYP P+E W R++ E+GL
Sbjct: 3 GVCYYPEHWPKERWKEDARRMREAGLSHV 31
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 160
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 733 AGEDIAFRAIDLLKEVSTHLGPKL-QSSLTQFHKTFIAECLDRLRAHYDTIGLSHT 787
G D F A + ++ H+ P L + F A D+LR + + HT
Sbjct: 78 GGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPN--ARFFDKLRIDGNLL---HT 128
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 27.3 bits (60), Expect = 4.8
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 421 PQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLD 480
P +E L L+ L E DLD G I+ ++ L ++
Sbjct: 39 PATMEPLAPALKELAGEHGWDASDLDFYIVHAGGP--RILDDLSTFL-EVDPHAFRFSRA 95
Query: 481 HL 482
L
Sbjct: 96 TL 97
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator
PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 26.3 bits (57), Expect = 9.5
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 469 KLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDK 513
+ + + + L A + R L+ RLA+ ++
Sbjct: 101 RNLYGNRAKREEWLVRAMHACLDESERALLAAAGPLLTRLAQFEE 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,325,023
Number of extensions: 162989
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 17
Length of query: 866
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 773
Effective length of database: 1,130,706
Effective search space: 874035738
Effective search space used: 874035738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)