RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6011
(388 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 207 bits (529), Expect = 4e-62
Identities = 87/242 (35%), Positives = 119/242 (49%), Gaps = 13/242 (5%)
Query: 63 PYAVIVFIHGESYEWNAGNH--YDGSVLASSGHIIFVSINYRLGILGFLKTQTGHTQSGN 120
V+V+IHG ++ + + YDG LA+S ++ V+INYRLG LGFL T GN
Sbjct: 99 KLPVMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTGDSEL-PGN 157
Query: 121 WAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVLLTPSVKGLFHRVTLLSG 180
+ D + AL W+K NIA+FGGDP +TLFG GAA V+++LL+P+ +GLFHR L+SG
Sbjct: 158 AGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPASRGLFHRAILMSG 217
Query: 181 SILSPWSFVHDPDSIRSNVADQLGCTLSDN---LAPCLRTHTLASLLQVNLTPPRFLAGF 237
S LSPW+ +P +A LGC D+ L CLR + LL L + F
Sbjct: 218 SALSPWAITSNPRQRAKRLAKLLGCPGEDSSAELLECLRKKSAEELLDAQLLLLEEVGFF 277
Query: 238 ------GPHLFTDPNVALEKAGDNFVTTPLMAGVVTTESYLNFNANDIQYGFEEDQRNRV 291
L K+G F PL+ GV + E L + N
Sbjct: 278 PFGPVVDGDFLPKDPEELLKSG-WFNKVPLLIGVTSDEGLLFLAYVLPDPTELSELLNED 336
Query: 292 LR 293
Sbjct: 337 FL 338
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 177 bits (450), Expect = 8e-51
Identities = 91/268 (33%), Positives = 122/268 (45%), Gaps = 28/268 (10%)
Query: 32 NPGPLVWCASWVVGYSLEHGGRLEGS-------------RGVDAPYAVIVFIHGESYEWN 78
+ P C W +L GS V+V+IHG + +
Sbjct: 52 SYPPS--CMQWDQLGGGLWNAKLPGSEDCLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFG 109
Query: 79 AGNHYDGSVLASSGH-IIFVSINYRLGILGFLKTQTGHTQSGNWAVSDVIAALEWIKINI 137
+G+ Y G LA G +I VSINYRLG+LGFL T GN+ + D AL+W++ NI
Sbjct: 110 SGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIEL-PGNYGLKDQRLALKWVQDNI 168
Query: 138 ASFGGDPTRITLFGHDTGAALVNIVLLTPSVKGLFHRVTLLSGSILSPWSFVHDPDSIRS 197
A+FGGDP +T+FG G A V+++LL+P KGLFHR SGS LSPW+ +
Sbjct: 169 AAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSPWAIQENARGRAK 228
Query: 198 NVADQLGCTLSDN--LAPCLRTHTLASLLQVNLTPPRFL----AGFGPHL----FTDPNV 247
+A LGC + + L CLR+ + LL F FGP + D
Sbjct: 229 RLARLLGCNDTSSAELLDCLRSKSAEELLDATRKLLLFSYSPFLPFGPVVDGDFIPDDPE 288
Query: 248 ALEKAGDNFVTTPLMAGVVTTESYLNFN 275
L K G F PL+ GV E
Sbjct: 289 ELIKEG-KFAKVPLIIGVTKDEGGYFAA 315
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 140 bits (355), Expect = 2e-37
Identities = 88/317 (27%), Positives = 123/317 (38%), Gaps = 57/317 (17%)
Query: 66 VIVFIHGESYEWNAGNH--YDGSVLASSGHIIFVSINYRLGILGFLKTQ---TGHTQSGN 120
V+V+IHG Y +G+ YDGS LA+ G ++ VS+NYRLG LGFL T + N
Sbjct: 96 VMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASN 155
Query: 121 WAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVLLTPSVKGLFHRVTLLSG 180
+ D I AL+W++ NI +FGGDP +TLFG GAA + +L PS KGLFHR LSG
Sbjct: 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSG 215
Query: 181 SILSPWSFVHDPDSIRSN-VADQLGCTLSDNLAPCLRTHTLASLLQVNLTPPRFLAGFGP 239
+ S + ++ A LG + LR + L++ L L G
Sbjct: 216 AASRVTS--REEAREKAAAFARALGIPEAT--LDKLRALSAEDLVKARLP----LIGRTF 267
Query: 240 HLFTDPNVALEKAGDNFV--------------TTPLMAGVVTTESYLNFNANDIQYGFEE 285
V GD+ + PLM G E L F I + +
Sbjct: 268 GAVPYGPV----LGDSLLPRDPLEAIAQGRSHGVPLMIGTNHDEGSL-F----INFNPDS 318
Query: 286 DQRNRVLRLTDDQRVQYLLSKLSGSALTVCSGIPPIGSNYQTIWNLLVDRYEDKRALASS 345
R D+ L G I N + + A +
Sbjct: 319 PPGLR------DKVAARL------------PGKELI--NAERVPAAYPGVSAAAAAFGAL 358
Query: 346 YIDQIIKTYVRNAYVYH 362
D++ K
Sbjct: 359 VTDRLFKAPSIRLAQAQ 375
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 56.5 bits (136), Expect = 6e-09
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 61 DAPYAVIVFIHGESYE--WNAGNHYDGSVLASSGHIIFVSINYRLGILGFLKTQTGHTQS 118
A V++++HG + + + LA++ + VS++YRL
Sbjct: 76 AATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA------------PE 123
Query: 119 GNW--AVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVLLTPSVKGLFHRVT 176
+ A+ D AA W++ N A G DP+RI + G G L + L +GL
Sbjct: 124 HPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLP---- 179
Query: 177 LLSGSIL-SPWS 187
L + +L SP
Sbjct: 180 LPAAQVLISPLL 191
>gnl|CDD|202685 pfam03564, DUF1759, Protein of unknown function (DUF1759). This is
a family of proteins of unknown function. Most of the
members are gag-polyproteins.
Length = 146
Score = 50.1 bits (120), Expect = 1e-07
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 293 RLTDDQRVQYLLSKLSGSALTVCSGIPPIGSNYQTIWNLLVDRYEDKRALASSYIDQIIK 352
L + Q+ YL S L G A T+ + +P +NY W L +RY++ R + S +++++K
Sbjct: 24 DLPEIQKFNYLKSALEGEAATLVTHLPITAANYDVAWEALKERYDNPRVIIRSLLNKLMK 83
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 41.0 bits (97), Expect = 4e-04
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 67 IVFIHGESYEW---NAGNHYD-GSVLASSGHIIFVSINYRLGILGFLKTQTGHTQSGNW- 121
+V+ HG + +A H LA++ + VS++YRL +
Sbjct: 1 LVYFHGGG--FVLGSADTHDRLCRRLAAAAGAVVVSVDYRL--------------APEHP 44
Query: 122 ---AVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVLL 164
A+ D AAL W+ + G DP+RI + G G L V L
Sbjct: 45 FPAAIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGGNLAAAVAL 90
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 41.0 bits (96), Expect = 9e-04
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 63 PYAVIVFIHG-------ESYEWNAGNHYDGSVLASSGHIIFVSINYRLGILGFLK--TQT 113
Y +IV+IHG S+ VLAS+G+ + NYR G G+ +
Sbjct: 393 KYPLIVYIHGGPSAQVGYSFNPEI------QVLASAGYAVLA-PNYR-GSTGYGREFADA 444
Query: 114 GHTQSGNWAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVL-LTPSVK 169
G + D+IAA++ + DP RI + G G + + TP K
Sbjct: 445 IRGDWGGVDLEDLIAAVDALV---KLPLVDPERIGITGGSYGGYMTLLAATKTPRFK 498
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 33.0 bits (76), Expect = 0.15
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 28/152 (18%)
Query: 47 SLEHGGRLEGSRGVDAPYAVIVFIHGESYEWNAGNHYD----GSVLASSGHIIF----VS 98
++ + D +++ +HG G+ D ++ + ++ V+
Sbjct: 1 MRKYPFIPRIEKPGDPAAPLLILLHG-----LGGDELDLVPLPELILPNATLVSPRGPVA 55
Query: 99 INYRLGILGFLKTQTGHTQSGNWAVSDVIAALEWIKINIA----SFGGDPTRITLFGHDT 154
N G F + G + D+ E + + +G D +RI L G
Sbjct: 56 ENG--GPRFFRRYDEGS-----FDQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQ 108
Query: 155 GAALV-NIVLLTPSVKGLFHRVTLLSGSILSP 185
GA + ++ L P GLF L SG +
Sbjct: 109 GANIALSLGLTLP---GLFAGAILFSGMLPLE 137
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 33.8 bits (78), Expect = 0.20
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 326 QTIWNL-----LVDRYEDKRALASSYIDQIIKTYV-RNAYVYHLNEIFSTIRNEYTDWDK 379
T++ + +RYED+ + ID I ++ Y N ++ Y D D+
Sbjct: 95 TTVYAGWTYDAITNRYEDRVPVPVYEIDLIDSKGQCYSSARYVRNGVY----VAYHDRDE 150
Query: 380 NN 381
N
Sbjct: 151 VN 152
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 32.0 bits (73), Expect = 0.24
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 30/98 (30%)
Query: 66 VIVFIHGESYEWNAGNHYD----GSVLASSGHIIFVSINYRLGILGFLKTQTGHTQSGNW 121
++V +HG G+ LAS G+ + V+++Y G+
Sbjct: 1 LVVLLHG-----AGGDPEAYAPLARALASRGYNV-VAVDYP----------------GHG 38
Query: 122 AVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALV 159
A A + A DP RI L GH G +
Sbjct: 39 ASLGAPDAEAVL----ADAPLDPERIVLVGHSLGGGVA 72
>gnl|CDD|225357 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 30.9 bits (70), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 334 DRYED--KRALASSYIDQIIKTYVRNAYVYHLNEIFSTIRNEYTD 376
+RY D K L Y + I K V+ AY+ +E + + Y D
Sbjct: 468 ERYLDFVKGYLRPEYAEFIGKE-VQKAYLESYSEYGQNLFDRYVD 511
>gnl|CDD|215352 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 30.6 bits (69), Expect = 1.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 114 GHTQSGNWAVSDVIAALEWIKIN---IASFGGDPTRITLFGHDTGAALVNIVLLTPSVKG 170
G+ S ++ V D A LE I+ + F LFGH TG A+V PS++
Sbjct: 182 GYVPSLDYVVEDTEAFLEKIRSENPGVPCF--------LFGHSTGGAVVLKAASYPSIED 233
Query: 171 LFHRVTLLS 179
+ L S
Sbjct: 234 KLEGIVLTS 242
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 30.0 bits (68), Expect = 2.0
Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 40/149 (26%)
Query: 63 PYAVIVFIHG-----ESYEWNAGNHYDGSVLASSGHIIFVSINYRLGILGF---LKTQTG 114
P V+V +HG YE A LA+ G +++ R G + Q G
Sbjct: 33 PKGVVVLVHGLGEHSGRYEELA------DDLAARG-FDVYALDLR----GHGRSPRGQRG 81
Query: 115 HTQSGNWAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALV------------NIV 162
H S V D+ +++ G P + L GH G + +V
Sbjct: 82 HVDSFADYVDDL---DAFVETIAEPDPGLP--VFLLGHSMGGLIALLYLARYPPRIDGLV 136
Query: 163 LLTPSVK----GLFHRVTLLSGSILSPWS 187
L +P++ L + L+ +L
Sbjct: 137 LSSPALGLGGAILRLILARLALKLLGRIR 165
>gnl|CDD|215228 PLN02408, PLN02408, phospholipase A1.
Length = 365
Score = 29.4 bits (66), Expect = 3.3
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 107 GFLKTQTGHTQSGNWAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVNIVLLTP 166
GFL T T G ++ +++ E I + S+G +P +T+ GH GAAL L
Sbjct: 165 GFLSLYTSGTAMGP-SLQEMVR--EEIARLLQSYGDEPLSLTITGHSLGAALA--TLTAY 219
Query: 167 SVKGLFHRVTLLS 179
+K F R +++
Sbjct: 220 DIKTTFKRAPMVT 232
>gnl|CDD|177519 PHA03075, PHA03075, glutaredoxin-like protein; Provisional.
Length = 123
Score = 28.1 bits (63), Expect = 3.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 122 AVSDVIAALE----WIKINIASFGGDPTRITLFGHDTGAALVN 160
++S+ + LE +++NI SF ++ + G D G L+N
Sbjct: 18 SISEALKELEDEYDILRVNILSFFSKDGQVKVLGMDKGYTLIN 60
>gnl|CDD|130623 TIGR01560, put_DNA_pack, uncharacterized phage protein (possible
DNA packaging). This model describes a small (~ 100
amino acids) protein found in phage and in putative
prophage regions of a number of bacterial genomes.
Members have been annotated in some cases as a possible
DNA packaging protein, but the source of this annotation
was not traced during construction of this model [Mobile
and extrachromosomal element functions, Prophage
functions].
Length = 91
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 348 DQIIKTYVRNAYVYHLNEIFSTIRNEYTDWDKNNNR 383
D++IK + A Y I S I D +
Sbjct: 17 DELIKLMIAAAQDY----IQSAIGTGVKDSFDSKPL 48
>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional.
Length = 262
Score = 28.6 bits (64), Expect = 4.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 211 LAPCLRTHTLASLLQVNLT------PPRFLAGFGPHLFTDP 245
+AP LR A L N T P + ++GFGP L +P
Sbjct: 154 VAPVLR---FADNLGDNATIEEIGPPEKVISGFGPELIGEP 191
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but its
function has not yet been determined. The glutaminase
domain catalyzes an amide nitrogen transfer from
glutamine to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
This domain is related to members of the Ntn (N-terminal
nucleophile) hydrolase superfamily and is found at the
N-terminus of enzymes such as glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS). GLMS
catalyzes the formation of glucosamine 6-phosphate from
fructose 6-phosphate and glutamine in amino sugar
synthesis. GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. Asparagine synthetase B synthesizes
asparagine from aspartate and glutamine. Beta-LS
catalyzes the formation of the beta-lactam ring in the
beta-lactamase inhibitor clavulanic acid. GltS
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine. These enzymes are generally dimers, but
GPATase also exists as a homotetramer.
Length = 181
Score = 28.0 bits (63), Expect = 5.5
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 362 HLNEIFSTIRNEY--TDWDKNNNRLWSGR 388
+ ++ S+I + +D + N+L+ GR
Sbjct: 111 DILDVLSSIEGPFAFIYYDASENKLYFGR 139
>gnl|CDD|237913 PRK15119, PRK15119, undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphate transferase;
Provisional.
Length = 365
Score = 28.5 bits (64), Expect = 6.1
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 103 LGILGFLKTQTGHTQSGNWAVSDVIAALEWIKINIASFGGDPTRITLFGHDTGAALVN-- 160
+G + G T W + + A L +I +N+ G R +F D G+ L+
Sbjct: 170 FAAMGIILWFDGQTSLALWCFAMIAAILPYILLNLGILG---RRYKVFMGDAGSTLIGFT 226
Query: 161 -IVLLTPSVKGLFHRVT 176
I +L + +G H ++
Sbjct: 227 VIWILLETTQGKTHPIS 243
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 28.1 bits (63), Expect = 8.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 33 PGPLVWCASWVVGYSLEHGGRLEGSRGVDAPYAVIV 68
PGP + S + S GGR +G+ GV A
Sbjct: 73 PGPALLVGSHL--DSQNLGGRYDGALGVVAGLEAAR 106
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 28.1 bits (63), Expect = 8.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 143 DPTRITLFGHDTGAALVNIVLLTPSVKGLFHRVTLLSGSI 182
+ R + GH G V LLT F R L+S S+
Sbjct: 135 NSERTAIIGHSLGGLFVLFALLTYP--DCFGRYGLISPSL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,148,971
Number of extensions: 1966963
Number of successful extensions: 1550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 33
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)