BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6012
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 206 bits (525), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 113/149 (75%), Gaps = 21/149 (14%)
Query: 1 MSSPSAGKRRMDTDVIKLIESKHEVTILGAVF-------------YYGGVWKVRVHLPEH 47
MSSPS GKRRMDTDVIKLIESKHEVTILG + Y GGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 48 YSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQL 107
Y KSPSIGF NK++HPNID SGTVCLDVINQ WTALYDL+NIFE FLPQL
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEA--------SGTVCLDVINQTWTALYDLTNIFESFLPQL 131
Query: 108 LTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
L YPNPIDPLNGDAAAMYLH+P+EYK+K
Sbjct: 132 LAYPNPIDPLNGDAAAMYLHRPEEYKQKI 160
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 8/104 (7%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG+WKV V LP+ Y SPSIGF NK+ HPN+D SG+VCLDVINQ WT
Sbjct: 43 YEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA--------SGSVCLDVINQTWTP 94
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
LY L N+FE FLPQLLTYPNP DPLN DAA++ + + Y++K
Sbjct: 95 LYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKV 138
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 71/130 (54%), Gaps = 21/130 (16%)
Query: 8 KRRMDTDVIKLIESKHEVTILGAVF-------------YYGGVWKVRVHLPEHYSSKSPS 54
RR + D ++L S +V V Y G W + V LP Y KSPS
Sbjct: 14 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 73
Query: 55 IGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPI 114
IGF N++ HPN+D SG+VCLDVINQ WT +Y L NIF+ FLPQLL YPNP
Sbjct: 74 IGFCNRILHPNVDER--------SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 125
Query: 115 DPLNGDAAAM 124
DPLN AA +
Sbjct: 126 DPLNVQAAHL 135
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 1 MSSPSAGKRRMDTDVIKLIE----------SKHEVTILGAVFY-------YGGVWKVRVH 43
MS+P+ +RR+ D +L E S++ + AV + G +K+ +
Sbjct: 1 MSTPA--RRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIE 58
Query: 44 LPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECF 103
E Y +K P++ F +KM+HPN+ Y G++CLD++ W+ YD+S+I
Sbjct: 59 FSEEYPNKPPTVRFLSKMFHPNV---------YADGSICLDILQNRWSPTYDVSSILTS- 108
Query: 104 LPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ LL PNP P N AA +Y EY+K+
Sbjct: 109 IQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + E Y +K P++ F ++M+HPNI Y G++CLD++ W+
Sbjct: 48 WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI---------YADGSICLDILQNQWSP 98
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+YD++ I + LL PNP P N +AA MY EY ++
Sbjct: 99 IYDVAAILTS-IQSLLCDPNPNSPANSEAARMYSESKREYNRR 140
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVH 43
M++PS +RR+ D KL E E I G + G +K+ +
Sbjct: 1 MTTPS--RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLE 58
Query: 44 LPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECF 103
E Y +K P++ F +KM+HPN+ Y G++CLD++ W+ YD++ I
Sbjct: 59 FTEEYPNKPPTVKFISKMFHPNV---------YADGSICLDILQNRWSPTYDVAAILTS- 108
Query: 104 LPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ LL PNP P N AA +Y EY+K+
Sbjct: 109 IQSLLDEPNPNSPANSLAAQLYQENRREYEKRV 141
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVH 43
M++PS +RR+ D KL E E I G + G +K+ +
Sbjct: 4 MTTPS--RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLE 61
Query: 44 LPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECF 103
E Y +K P++ F +KM+HPN+ Y G++CLD++ W+ YD++ I
Sbjct: 62 FTEEYPNKPPTVKFISKMFHPNV---------YADGSICLDILQNRWSPTYDVAAILTS- 111
Query: 104 LPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ LL PNP P N AA +Y EY+K+
Sbjct: 112 IQSLLDEPNPNSPANSLAAQLYQENRREYEKRV 144
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + VH P Y K P I F K+YHPNI+ +G++
Sbjct: 52 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS---------NGSI 102
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL D A +Y ++Y +
Sbjct: 103 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNR 154
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + VH P Y K P I F K+YHPNI+ +G++
Sbjct: 36 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL D A +Y ++Y +
Sbjct: 87 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNR 138
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + VH P Y K P I F K+YHPNI+ +G++
Sbjct: 40 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS---------NGSI 90
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL D A +Y ++Y +
Sbjct: 91 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNR 142
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y G +++ + E Y +K P + F ++M+HPN+ Y +G +CLD++ WT
Sbjct: 48 YEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV---------YANGEICLDILQNRWTP 98
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140
YD+++I + L PNP P N +AA ++ +Y K+ T+
Sbjct: 99 TYDVASILTS-IQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETV 145
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F K+YHPNI+ +G++
Sbjct: 39 QATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS---------NGSI 89
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL D A +Y ++Y +
Sbjct: 90 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAHIYKSDKEKYNR 141
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 44 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 94
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y D+Y +
Sbjct: 95 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNR 146
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 42 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 92
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y D+Y +
Sbjct: 93 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNR 144
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y D+Y +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNR 138
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 33 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 83
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y D+Y +
Sbjct: 84 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNR 135
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 34 QATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS---------NGSI 84
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
CLD++ W+ +S + + LLT PNP DPL + A +Y
Sbjct: 85 CLDILRDQWSPALTISKVL-LSISSLLTDPNPDDPLVPEIAHVY 127
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F K+YHPNI+ G +
Sbjct: 54 QATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS---------QGAI 104
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
CLD++ W+ +S + + LLT PNP DPL + A +Y
Sbjct: 105 CLDILKDQWSPALTISKVL-LSISSLLTDPNPDDPLVPEIAHLY 147
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + LPE Y +P + F K+YHPN+D G +CLD++ W+
Sbjct: 45 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRICLDILKDKWSP 95
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ PNP DPL D A +
Sbjct: 96 ALQIRTVL-LSIQALLSAPNPDDPLANDVAEQW 127
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 52 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 102
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 103 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 154
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 44 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 94
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 95 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYQTDREKYNR 146
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + LPE Y +P + F K+YHPN+D G +CLD++ W+
Sbjct: 49 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRICLDILKDKWSP 99
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ PNP DPL D A +
Sbjct: 100 ALQIRTVL-LSIQALLSAPNPDDPLANDVAEQW 131
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + LPE Y +P + F K+YHPN+D G +CLD++ W+
Sbjct: 47 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRICLDILKDKWSP 97
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ PNP DPL D A +
Sbjct: 98 ALQIRTVL-LSIQALLSAPNPDDPLANDVAEQW 129
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + LPE Y +P + F K+YHPN+D G +CLD++ W+
Sbjct: 52 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRICLDILKDKWSP 102
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ PNP DPL D A +
Sbjct: 103 ALQIRTVL-LSIQALLSAPNPDDPLANDVAEQW 134
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG++ + VH P Y K+P + F K+YHPNI+ +G +CLD++ W+
Sbjct: 48 YQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK---------NGVICLDILKDQWSP 98
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAA 122
LS + + LLT PNP DPL+ + A
Sbjct: 99 ALTLSRVL-LSISSLLTDPNPSDPLDPEVA 127
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
+ GG +K+ + LPE Y +P + F K+YHPN+D G +CLD++ W+
Sbjct: 50 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRICLDILKDKWSP 100
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ PNP DPL D A +
Sbjct: 101 ALQIRTVL-LSIQALLSAPNPDDPLANDVAEQW 132
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 34 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 84
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 85 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 136
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + VH P Y K P I F K+YHPNI+ +G++
Sbjct: 40 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS---------NGSI 90
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL D A +Y ++Y +
Sbjct: 91 KLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNR 142
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 39 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 89
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 90 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 141
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + V + +P Y K P + F K+YHPNI ++G +CLD++ AW+
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS--------VTGAICLDILRNAWSP 98
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ L + L LL P P DP + + A YL + + K
Sbjct: 99 VITLKSAL-ISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 141
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GGV+ + +H P Y K P + F ++YHPNI+ +G++CLD++ W+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSICLDILRSQWSP 97
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+S + LL PNP DPL + A +Y ++Y +
Sbjct: 98 ALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 37 QATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 87
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W+ +S + LL PNP DPL + A +Y + Y +
Sbjct: 88 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRERYNQ 139
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + V + +P Y K P + F K+YHPNI ++G +CLD++ AW+
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS--------VTGAICLDILKNAWSP 97
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ L + L LL P P DP + + A YL + + K
Sbjct: 98 VITLKSAL-ISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD + W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 87 CLDALRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ +I+G Y GGV+ + +H P Y K P I F K+YHPNI+ +G +
Sbjct: 35 QASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA---------NGNI 85
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
CLD++ W+ LS + LLT NP DPL + A +Y
Sbjct: 86 CLDILKDQWSPALTLSKVLLSIC-SLLTDANPDDPLVPEIAHIY 128
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
CLD++ W +S + LL PNP DPL + A +Y ++Y +
Sbjct: 87 CLDILRSQWGPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 31 VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAW 90
Y +K+ + P Y K P + F +HPN+D SG +CLD++ + W
Sbjct: 51 TVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ---------SGNICLDILKENW 101
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
TA YD+ I L LL PN PLN AA M+ ++ EYKK
Sbjct: 102 TASYDVRTIL-LSLQSLLGEPNNASPLNAQAADMWSNQT-EYKK 143
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y G++++ ++LP+ Y ++P + F K+YHPNID R+ G +
Sbjct: 38 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-----RL----GRI 88
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
CLDV+ W+ + + + LL PNP DPL D A ++ K K
Sbjct: 89 CLDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 142
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 34 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 84
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL + A +Y D+Y +
Sbjct: 85 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNR 136
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y G++++ ++LP+ Y ++P + F K+YHPNID R+ G +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-----RL----GRI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
CLDV+ W+ + + + LL PNP DPL D A ++ K K
Sbjct: 87 CLDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG +K+ + LPE Y + P + F K+YHPNID G +CLD++ W+
Sbjct: 45 YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK---------LGRICLDILKDKWSP 95
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ P P DPL+ A +
Sbjct: 96 ALQIRTVL-LSIQALLSSPEPDDPLDSKVAEHF 127
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG +K+ + LPE Y + P + F K+YHPNID G +CLD++ W+
Sbjct: 45 YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK---------LGRICLDILKDKWSP 95
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + LL+ P P DPL+ A +
Sbjct: 96 ALQIRTVL-LSIQALLSSPEPDDPLDSKVAEHF 127
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 33 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 83
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 84 SLDILRSQWSPALKISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 135
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 52 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 102
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 103 XLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 154
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 37 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 87
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 88 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 139
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GGV+ + +H P Y K P + F ++YHPNI+ +G++ LD++ W+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSISLDILRSQWSP 97
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+S + + LL PNP DPL + A +Y ++Y +
Sbjct: 98 ALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y G++++ ++LP+ Y ++P + F K+YHPNID R+ G +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-----RL----GRI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
LDV+ W+ + + + LL PNP DPL D A ++ K K
Sbjct: 87 SLDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHP I+ +G++
Sbjct: 34 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS---------NGSI 84
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
LD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 85 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNR 136
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 26 TILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCL 83
TILG Y GGV+ + + Y K P + F+ ++YH NI+ G +CL
Sbjct: 83 TILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS---------QGVICL 133
Query: 84 DVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
D++ W+ +S + LLT NP DPL G A Y+ E+ +
Sbjct: 134 DILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDR 183
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 22 KHEVTILGAVFYYG-GVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGT 80
K EV + YY G + E Y + P + K++HPNID + G
Sbjct: 65 KLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID---------LKGN 115
Query: 81 VCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140
VCL+++ + W+ DL +I L L PNP DPLN DAA + E+ + TM
Sbjct: 116 VCLNILREDWSPALDLQSIITGLL-FLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTM 174
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 25 VTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVC 82
ILG Y GV+K+ V +PE Y + P I F +YHPNID +G +C
Sbjct: 38 AQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS---------AGRIC 88
Query: 83 LDVI----NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
LDV+ AW +++ + + L++ PNP DPL D ++ +
Sbjct: 89 LDVLKLPPKGAWRPSLNIATVLTS-IQLLMSEPNPDDPLMADISSEF 134
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 21 SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYIS 78
K E I G + GGV+ + V P Y SK P + F YHPN+ Y S
Sbjct: 41 QKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV---------YPS 91
Query: 79 GTVCLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
GT+CL ++N Q W L I + LL PNP P A + EY KK
Sbjct: 92 GTICLSILNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
Query: 137 L 137
L
Sbjct: 151 L 151
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 21 SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYIS 78
K E I G + GGV+ + V P Y SK P + F YHPN+ Y S
Sbjct: 39 QKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV---------YPS 89
Query: 79 GTVCLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
GT+CL ++N Q W L I + LL PNP P A + EY KK
Sbjct: 90 GTICLSILNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
Query: 137 L 137
L
Sbjct: 149 L 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 26 TILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCL 83
TILG Y GGV+ + + Y K P + F+ ++YH NI+ G +CL
Sbjct: 38 TILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS---------QGVICL 88
Query: 84 DVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
D++ W+ +S + LLT NP DPL G A Y+ E+ +
Sbjct: 89 DILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDR 138
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 26 TILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCL 83
TI GA Y +K+ + P Y +P++ F YHPN+D G + L
Sbjct: 65 TIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD---------TQGNISL 115
Query: 84 DVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
D++ + W+ALYD+ I + LL PN PLN AA ++ P +KK
Sbjct: 116 DILKEKWSALYDVRTIL-LSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKK 164
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y G++++ ++LP+ Y ++P + F K+YHP ID R+ G +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAID-----RL----GRI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
LDV+ W+ + + + LL PNP DPL D A ++ K K
Sbjct: 87 SLDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-QAWT 91
Y G +++ ++ P Y K P I FK K+YHPNID G VCL VI+ + W
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE---------KGQVCLPVISAENWK 96
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + L+ P P PL D A Y
Sbjct: 97 PATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEY 129
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-QAWT 91
Y G +++ ++ P Y K P I FK K+YHPNID G VCL VI+ + W
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE---------KGQVCLPVISAENWK 98
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + + L+ P P PL D A Y
Sbjct: 99 PATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEY 131
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 1 MSSPSAGKRRMDTDVI--KLIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58
+ S K ++ D++ E + E+ Y GG +++ + +PE Y P + F
Sbjct: 21 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 80
Query: 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLN 118
K++HPNI ++G +CLD++ W A L + LL P DP +
Sbjct: 81 TKIWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQD 131
Query: 119 GDAAAMYLHKPDEYKK 134
A Y P+ +K+
Sbjct: 132 AVVANQYKQNPEMFKQ 147
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 1 MSSPSAGKRRMDTDVI--KLIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58
+ S K ++ D++ E + E+ Y GG +++ + +PE Y P + F
Sbjct: 18 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 77
Query: 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLN 118
K++HPNI ++G +CLD++ W A L + LL P DP +
Sbjct: 78 TKIWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQD 128
Query: 119 GDAAAMYLHKPDEYKK 134
A Y P+ +K+
Sbjct: 129 AVVANQYKQNPEMFKQ 144
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 1 MSSPSAGKRRMDTDVI--KLIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58
+ S K ++ D++ E + E+ Y GG +++ + +PE Y P + F
Sbjct: 19 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 78
Query: 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLN 118
K++HPNI ++G +CLD++ W A L + LL P DP +
Sbjct: 79 TKIWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQD 129
Query: 119 GDAAAMYLHKPDEYKK 134
A Y P+ +K+
Sbjct: 130 AVVANQYKQNPEMFKQ 145
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 1 MSSPSAGKRRMDTDVI--KLIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58
+ S K ++ D++ E + E+ Y GG +++ + +PE Y P + F
Sbjct: 34 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 93
Query: 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLN 118
K++HPNI ++G +CLD++ W A L + LL P DP +
Sbjct: 94 TKIWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQD 144
Query: 119 GDAAAMYLHKPDEYKK 134
A Y P+ +K+
Sbjct: 145 AVVANQYKQNPEMFKQ 160
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + + + +P Y P I F K++HPNI T G +CLDV+ W+
Sbjct: 67 YEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQT--------GAICLDVLKNEWSP 118
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ + LL+ P P DP + + A MY
Sbjct: 119 ALTIRTAL-LSIQALLSDPQPDDPQDAEVAKMY 150
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 14 DVIKLIESKHEVTILGAVF-------YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66
D IK+ ++ ++T L Y GG++++++ L + + + P F K++HPN+
Sbjct: 31 DGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90
Query: 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYL 126
+G +C++V+ + WTA + ++ + LL +PNP LN +A + L
Sbjct: 91 GA---------NGEICVNVLKRDWTAELGIRHVL-LTIKCLLIHPNPESALNEEAGRLLL 140
Query: 127 HKPDEYKKKC 136
+EY +
Sbjct: 141 ENYEEYAARA 150
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 1 MSSPSAGKRRMDTDVI--KLIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58
+ S K ++ D++ E + E+ Y GG +++ + +PE Y P + F
Sbjct: 70 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 129
Query: 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLN 118
K++HPNI ++G +CLD++ W A L + LL P DP +
Sbjct: 130 TKIWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQD 180
Query: 119 GDAAAMYLHKPDEYKK 134
A Y P+ +K+
Sbjct: 181 AVVANQYKQNPEMFKQ 196
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 25/130 (19%)
Query: 22 KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISG 79
K EV ++G Y GG +K + P Y K P + F ++++HPNID G
Sbjct: 35 KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK---------EG 85
Query: 80 TVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYL 126
VC+ +++ + W ++ + I + +LT PN P N DAA M
Sbjct: 86 NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI-SMLTDPNFESPANVDAAKMQR 144
Query: 127 HKPDEYKKKC 136
E+KKK
Sbjct: 145 ENYAEFKKKV 154
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN--QAW 90
+ GG++K+ + PE Y ++ P F ++HPN+ Y SGTVCL ++N + W
Sbjct: 59 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV---------YPSGTVCLSILNEEEGW 109
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + LL PN P +A M+ EY+K+
Sbjct: 110 KPAITIKQIL-LGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKR 153
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 54 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 104
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 105 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 148
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 55 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 105
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 106 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 149
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 103
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 104 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 147
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 58 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 108
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 109 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 55 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 105
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 106 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 106
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 107 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 150
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I G +Y GG +K R+ P Y P+ F KM+HPNI Y +G V
Sbjct: 38 EVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI---------YETGDV 88
Query: 82 CLDVI-------------NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
C+ ++ ++ W ++ I + LL PN P N DA+ MY
Sbjct: 89 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPANVDASVMY 144
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I G +Y GG +K R+ P Y P+ F KM+HPNI Y +G V
Sbjct: 41 EVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI---------YETGDV 91
Query: 82 CLDVI-------------NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
C+ ++ ++ W ++ I + LL PN P N DA+ MY
Sbjct: 92 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPANVDASVMY 147
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI-NQAWT 91
Y+ + +R+ P Y K P I F K+YHPN+D G +CL +I ++ W
Sbjct: 45 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN---------GQICLPIISSENWK 95
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ E L L+ PN +PL D A + P+ ++K
Sbjct: 96 PCTKTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRK 137
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI-NQAWT 91
Y+ + +R+ P Y K P I F K+YHPN+D G +CL +I ++ W
Sbjct: 48 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN---------GQICLPIISSENWK 98
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ E L L+ PN +PL D A + P+ ++K
Sbjct: 99 PCTKTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRK 140
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HP + Y SGTVCL ++ ++ W
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV---------YPSGTVCLSILEEDKDW 106
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 107 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 150
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 106
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN P +A +Y EY+K+
Sbjct: 107 RPAITIKQIL-LGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKR 150
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ SGTVCL ++ ++ W
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------APSGTVCLSILEEDKDW 106
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 107 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 150
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTVCL ++ ++ W
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVCLSILEEDKDW 106
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN P +A +Y EY+K+
Sbjct: 107 RPAITIKQIL-LGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKR 150
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
FY G + + + Y P + + +YHPNID + G VCL+++ + W
Sbjct: 47 FYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID---------LEGNVCLNILREDWK 97
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAM 124
+ +++I L L PNP DPLN +AA +
Sbjct: 98 PVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEV 129
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTV L ++ ++ W
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVSLSILEEDKDW 103
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 104 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 147
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAW 90
+ GG++K+R+ + Y S P F+ ++HPN+ Y SGTV L ++ ++ W
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTVXLSILEEDKDW 103
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ I + +LL PN DP +A +Y EY+K+
Sbjct: 104 RPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRV 148
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I+G Y GGV+K + P+ Y + P + F +++HPN+D +G V
Sbjct: 51 EVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK---------NGDV 101
Query: 82 CLDVINQAWTALYDLSNIFECFLP------------QLLTYPNPIDPLNGDAAAMYLH-K 128
C+ ++++ Y E +LP +L PN P N DAA + +
Sbjct: 102 CISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 161
Query: 129 PDEYKKKC 136
E+K+K
Sbjct: 162 NGEFKRKV 169
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + + + +P Y P + F K++HPNI T G +CLD++ W+
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT--------GAICLDILKHEWSP 140
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYL 126
+ + +L P P DP + + A M +
Sbjct: 141 ALTIRTAL-LSIQAMLADPVPTDPQDAEVAKMMI 173
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
FY G + + + Y P + + +YHPNID + G V L+++ + W
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID---------LEGNVALNILREDWK 117
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAM 124
+ +++I L L PNP DPLN +AA +
Sbjct: 118 PVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEV 149
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 18 LIESKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYI 77
++E + E+ L + G V+++ +H Y+ P + F +HPN+D T
Sbjct: 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHT------- 104
Query: 78 SGTVCLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYK 133
G C+D ++ + W Y LS+I L +L+ P +P+N +AA + + Y+
Sbjct: 105 -GQPCIDFLDNPEKWNTNYTLSSILLA-LQVMLSNPVLENPVNLEAARILVKDESLYR 160
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQ--- 88
+Y GG ++ +P+ Y+ P + K++HPNI +G +CL ++ +
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE---------TGEICLSLLREHSI 107
Query: 89 ---AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
W L ++ N DPLN +AA +L ++++ K
Sbjct: 108 DGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNK 157
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQ--- 88
+Y GG ++ +P+ Y+ P + K++HPNI +G +CL ++ +
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE---------TGEICLSLLREHSI 107
Query: 89 ---AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
W L ++ N DPLN +AA +L ++++ K
Sbjct: 108 DGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNK 157
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN----- 87
Y GV+ ++ P+ Y P + F + HPNI Y +G VC+ +++
Sbjct: 49 YADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI---------YPNGEVCISILHSPGDD 99
Query: 88 --------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ W+ + + I + +L+ PN N DA ++ E++++
Sbjct: 100 PNMYELAEERWSPVQSVEKILLSVM-SMLSEPNIESGANIDACILWRDNRPEFERQ 154
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 36 GVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-------- 87
GV+ + P Y P + F +M+HPNI Y G VC+ +++
Sbjct: 57 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI---------YPDGRVCISILHAPGDDPMG 107
Query: 88 -----QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ W+ + + I + +L PN N DA+ M+ +++ K
Sbjct: 108 YESSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDASKMWRDDREQFYK 158
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 36 GVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-------- 87
GV+ + P Y P + F +M+HPNI Y G VC+ +++
Sbjct: 51 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI---------YPDGRVCISILHAPGDDPMG 101
Query: 88 -----QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ W+ + + I + +L PN N DA+ M+ +++ K
Sbjct: 102 YESSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDASKMWRDDREQFYK 152
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 36 GVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-------- 87
GV+ + P Y P + F +M+HPNI Y G VC+ +++
Sbjct: 54 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI---------YPDGRVCISILHAPGDDPMG 104
Query: 88 -----QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ W+ + + I + +L PN N DA+ M+ +++ K
Sbjct: 105 YESSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDASKMWRDDREQFYK 155
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 36 GVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-------- 87
GV+ + P Y P + F +M+HPNI Y G VC+ +++
Sbjct: 55 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI---------YPDGRVCISILHAPGDDPMG 105
Query: 88 -----QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ W+ + + I + +L PN N DA+ M+ +++ K
Sbjct: 106 YESSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDASKMWRDDREQFYK 156
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 115 DPLNGDAAAMYLHKPDEYK---KKCLPTMLAPESNPGLPRARRV 155
DPL+ AA K ++Y+ + +PTM+ E++ LPR R++
Sbjct: 40 DPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQM 83
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 115 DPLNGDAAAMYLHKPDEYK---KKCLPTMLAPESNPGLPRARRV 155
DPL+ AA K ++Y+ + +PTM+ E++ LPR R++
Sbjct: 40 DPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQM 83
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 115 DPLNGDAAAMYLHKPDEYK---KKCLPTMLAPESNPGLPRARRV 155
DPL+ AA K ++Y+ + +PTM+ E++ LPR R++
Sbjct: 40 DPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQM 83
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 35 GGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALY 94
G +++ V + Y + P++ F +Y P + G G +C ++N WT
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG---------EGGICDRMVNDFWTPDQ 118
Query: 95 DLSNIFECFLPQLLT-YPNPIDPLNGDAAAMYLHK-PDEYKKKC 136
S++ + L ++ + Y + D A YL K P ++ +
Sbjct: 119 HASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARV 162
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 44 LPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISG 79
LP H + S+G KN MY I+G + N IF + G
Sbjct: 17 LPHHVGKLTSSVGNKNAMYI--IEGESANTIFKVQG 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,793,699
Number of Sequences: 62578
Number of extensions: 249483
Number of successful extensions: 578
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 111
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)