Query psy6012
Match_columns 168
No_of_seqs 135 out of 1299
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 00:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.1E-45 4.5E-50 282.6 13.1 134 1-145 1-152 (153)
2 KOG0417|consensus 100.0 6.2E-45 1.3E-49 275.7 12.0 128 8-145 3-147 (148)
3 KOG0419|consensus 100.0 8.1E-44 1.8E-48 264.0 12.1 134 1-146 1-151 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1E-41 2.3E-46 262.8 14.4 130 7-146 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 8.9E-41 1.9E-45 256.3 13.9 127 8-144 3-146 (147)
6 KOG0418|consensus 100.0 3.7E-40 8E-45 257.3 10.4 151 1-163 1-177 (200)
7 KOG0425|consensus 100.0 1.5E-38 3.2E-43 242.0 12.6 131 5-145 4-165 (171)
8 KOG0424|consensus 100.0 1.9E-38 4.1E-43 238.4 12.0 133 1-145 1-157 (158)
9 KOG0416|consensus 100.0 2.1E-38 4.5E-43 244.1 9.9 136 6-149 3-152 (189)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.7E-36 8.1E-41 227.6 12.7 121 10-140 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 5.9E-35 1.3E-39 221.5 13.0 122 9-140 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.8E-34 3.9E-39 219.7 13.6 126 9-144 1-145 (145)
13 KOG0426|consensus 100.0 1E-34 2.2E-39 215.8 11.5 132 1-144 1-163 (165)
14 KOG0422|consensus 100.0 4.3E-34 9.3E-39 213.9 12.8 130 7-146 3-150 (153)
15 KOG0421|consensus 100.0 6.3E-34 1.4E-38 214.2 9.8 126 7-143 30-172 (175)
16 KOG0420|consensus 100.0 3.3E-33 7.2E-38 215.5 9.7 133 4-146 26-176 (184)
17 KOG0423|consensus 99.9 3.8E-28 8.2E-33 188.0 6.2 133 4-146 8-157 (223)
18 KOG0427|consensus 99.9 5.2E-23 1.1E-27 153.1 8.7 104 6-119 15-136 (161)
19 KOG0894|consensus 99.8 1.3E-20 2.8E-25 150.5 11.5 97 1-110 1-117 (244)
20 KOG0429|consensus 99.8 9.9E-21 2.2E-25 151.6 9.7 132 22-162 50-191 (258)
21 KOG0428|consensus 99.7 3.7E-17 8.1E-22 133.1 8.7 98 4-112 9-125 (314)
22 KOG0895|consensus 99.3 7.8E-13 1.7E-17 124.8 5.2 77 23-109 883-970 (1101)
23 KOG0896|consensus 99.2 1.1E-11 2.3E-16 92.8 3.3 89 17-113 35-127 (138)
24 KOG0895|consensus 99.1 3.4E-10 7.4E-15 107.3 8.1 93 9-111 285-405 (1101)
25 KOG0897|consensus 98.3 1.5E-06 3.3E-11 63.7 5.4 99 39-147 14-117 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 3E-06 6.5E-11 63.8 7.0 67 34-110 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.0 6.6E-06 1.4E-10 61.2 3.6 73 25-108 33-115 (121)
28 KOG2391|consensus 97.2 0.00098 2.1E-08 57.4 6.2 74 26-110 54-137 (365)
29 PF08694 UFC1: Ubiquitin-fold 94.6 0.063 1.4E-06 41.2 4.5 85 8-100 26-135 (161)
30 PF05773 RWD: RWD domain; Int 92.8 0.12 2.6E-06 36.4 3.1 31 30-60 43-73 (113)
31 smart00591 RWD domain in RING 91.9 0.21 4.6E-06 34.9 3.4 25 35-59 40-64 (107)
32 PF14462 Prok-E2_E: Prokaryoti 90.9 1.2 2.6E-05 33.2 6.7 31 31-61 37-67 (122)
33 PF14457 Prok-E2_A: Prokaryoti 88.8 0.63 1.4E-05 36.3 3.9 71 34-109 48-125 (162)
34 KOG3357|consensus 71.7 9.6 0.00021 29.0 4.7 76 9-92 30-127 (167)
35 KOG4018|consensus 50.1 15 0.00032 30.1 2.5 32 23-55 33-68 (215)
36 PF14460 Prok-E2_D: Prokaryoti 48.8 25 0.00055 27.4 3.7 41 59-111 90-133 (175)
37 cd03457 intradiol_dioxygenase_ 48.5 25 0.00054 28.0 3.6 51 34-86 85-140 (188)
38 cd00421 intradiol_dioxygenase 47.7 27 0.00058 26.3 3.6 25 34-58 64-89 (146)
39 PF06113 BRE: Brain and reprod 47.1 24 0.00053 30.7 3.5 25 38-63 308-332 (333)
40 PF09765 WD-3: WD-repeat regio 46.0 36 0.00078 29.0 4.4 79 5-108 98-186 (291)
41 KOG0309|consensus 40.9 46 0.001 32.4 4.6 29 32-60 461-491 (1081)
42 PF09943 DUF2175: Uncharacteri 40.8 23 0.0005 25.6 2.1 19 22-40 2-20 (101)
43 cd03459 3,4-PCD Protocatechuat 37.2 49 0.0011 25.5 3.6 30 35-66 72-106 (158)
44 PF06113 BRE: Brain and reprod 28.0 90 0.002 27.2 4.0 35 32-66 61-96 (333)
45 TIGR02423 protocat_alph protoc 27.2 83 0.0018 25.1 3.4 25 34-58 95-124 (193)
46 cd03463 3,4-PCD_alpha Protocat 24.1 1E+02 0.0023 24.4 3.5 30 35-66 92-126 (185)
47 smart00340 HALZ homeobox assoc 23.2 50 0.0011 20.1 1.2 14 7-20 20-33 (44)
48 KOG0680|consensus 23.0 72 0.0016 28.1 2.5 30 8-37 334-368 (400)
49 KOG3203|consensus 22.9 50 0.0011 25.8 1.4 15 59-83 49-63 (165)
50 TIGR03737 PRTRC_B PRTRC system 22.3 1.4E+02 0.0031 24.6 4.0 33 59-104 131-167 (228)
51 KOG4445|consensus 20.1 1.2E+02 0.0026 26.4 3.2 25 36-60 45-69 (368)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=282.57 Aligned_cols=134 Identities=39% Similarity=0.719 Sum_probs=127.7
Q ss_pred CCCChhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
|++++ |.+||++|+++|+++ +|+++|.| +||||||+|++.|.||++||++||+|+|.|+||
T Consensus 1 ~~s~~-a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 1 MSSPS-ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred CCchh-HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 55444 999999999999875 49999999 999999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhC
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLA 142 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~ 142 (168)
||||+. +|+||+++|++.|+|++++++||++| +.||.+||.++|+|.+||++|++|+++|.++||+++++
T Consensus 80 HPNV~~---------~G~vCLdIL~~~WsP~~~l~sILlsl-~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~ 149 (153)
T COG5078 80 HPNVDP---------SGNVCLDILKDRWSPVYTLETILLSL-QSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKK 149 (153)
T ss_pred CCCcCC---------CCCChhHHHhCCCCccccHHHHHHHH-HHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999998 99999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred ccC
Q psy6012 143 PES 145 (168)
Q Consensus 143 ~~~ 145 (168)
++.
T Consensus 150 ~~~ 152 (153)
T COG5078 150 YAE 152 (153)
T ss_pred hcc
Confidence 875
No 2
>KOG0417|consensus
Probab=100.00 E-value=6.2e-45 Score=275.66 Aligned_cols=128 Identities=33% Similarity=0.650 Sum_probs=123.6
Q ss_pred hccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCC
Q psy6012 8 KRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGT 70 (168)
Q Consensus 8 ~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~ 70 (168)
.+||.+|+++|..+ +|+++|.| +||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-- 80 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-- 80 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc--
Confidence 55999999999863 69999999 999999999999999999999999999999999999998
Q ss_pred ccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 71 LNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 71 ~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
.|.||+|+|+..|+|+++|.+||++| ++||.+||+++|++.++|++|+.|+.+|++.||+|++++|.
T Consensus 81 -------~G~IclDILk~~WsPAl~i~~VllsI-~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 81 -------NGRICLDILKDQWSPALTISKVLLSI-CSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred -------cccchHHhhhccCChhhHHHHHHHHH-HHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 69999999999999999999999999999999999999985
No 3
>KOG0419|consensus
Probab=100.00 E-value=8.1e-44 Score=264.02 Aligned_cols=134 Identities=32% Similarity=0.684 Sum_probs=129.3
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|| .+|.|||++|+.+|+++ .|+++|+| +|||+||+|++.|+|+++||.+||.|+|.+++||
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 78 77999999999999986 59999999 9999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
|||+. +|.+|+|+|..+|+|.+++.+||.+| |+||.+|++++|+|.+||.+|++|+.+|.+++++.+.++
T Consensus 79 PNvya---------~G~iClDiLqNrWsp~Ydva~ILtsi-QslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 79 PNVYA---------DGSICLDILQNRWSPTYDVASILTSI-QSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CCcCC---------CCcchHHHHhcCCCCchhHHHHHHHH-HHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999 99999999999999999999999999 899999999999999999999999999999999999988
Q ss_pred cCC
Q psy6012 144 ESN 146 (168)
Q Consensus 144 ~~~ 146 (168)
+..
T Consensus 149 w~~ 151 (152)
T KOG0419|consen 149 WSD 151 (152)
T ss_pred hcc
Confidence 653
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1e-41 Score=262.77 Aligned_cols=130 Identities=26% Similarity=0.560 Sum_probs=125.4
Q ss_pred hhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCC
Q psy6012 7 GKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGG 69 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~ 69 (168)
++|||++|+++|+++ +|+++|.| +|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~- 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-
Confidence 689999999999853 69999999 999999999999999999999999999999999999998
Q ss_pred CccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 70 TLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 70 ~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
+|.||+++|.+.|+|++|+++||++| ++||.+|++++|+|.+||++|++|+++|+++|++|+++++..
T Consensus 82 --------~G~iCl~iL~~~W~p~~ti~~iL~~i-~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 82 --------LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred --------CCeEECccCcccCCCCCcHHHHHHHH-HHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 799999999999999999999999999999999999999874
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=8.9e-41 Score=256.27 Aligned_cols=127 Identities=28% Similarity=0.614 Sum_probs=122.6
Q ss_pred hccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCC
Q psy6012 8 KRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGT 70 (168)
Q Consensus 8 ~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~ 70 (168)
.+||++|+++|+++ +|+++|.| +|||+||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-- 80 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-- 80 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC--
Confidence 68999999999753 69999999 899999999999999999999999999999999999998
Q ss_pred ccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 71 LNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 71 ~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
+|.||+++|.+.|+|++++++||.+| ++||.+|++++|+|.+||++|.+|+++|.++||+|+++++
T Consensus 81 -------~G~iCl~il~~~W~p~~ti~~il~~i-~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 81 -------NGSICLDILRDQWSPALTVSKVLLSI-SSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred -------CCEEEcccCcCCCCCcCcHHHHHHHH-HHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 7999999999999999999999999999999999999875
No 6
>KOG0418|consensus
Probab=100.00 E-value=3.7e-40 Score=257.25 Aligned_cols=151 Identities=24% Similarity=0.497 Sum_probs=140.8
Q ss_pred CCCChhhhccHHHHHHHhhhC------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK 60 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~ 60 (168)
|| . +.+||+++.+++..+ +-.++|.| |||||||+|.++|.+|++|||+||+|+|.|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 66 4 889999999999764 35799999 9999999999999999999999999999999
Q ss_pred ccCCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 61 MYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 61 i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
||||||+. .+|.||+|++++.|++++|+.++|+++ |++|..|++.+|.+..+|++|.+|++.|.+.||.|+
T Consensus 78 IwHPnVSs--------~tGaICLDilkd~Wa~slTlrtvLisl-QalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT 148 (200)
T KOG0418|consen 78 IWHPNVSS--------QTGAICLDILKDQWAASLTLRTVLISL-QALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWT 148 (200)
T ss_pred eecCCCCc--------ccccchhhhhhcccchhhhHHHHHHHH-HHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999 899999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hCccCCCCC------ccCCcccccCcccc
Q psy6012 141 LAPESNPGL------PRARRVTTMPWEQT 163 (168)
Q Consensus 141 ~~~~~~~~~------~~~~~~~~~~~~~~ 163 (168)
..++..+.. .++..+..|++++.
T Consensus 149 ~~fA~~~~~~~~~~~~~v~~l~~mGf~~~ 177 (200)
T KOG0418|consen 149 TEFAGGRLPDDPWDKKKVDSLIEMGFSEL 177 (200)
T ss_pred HHHhCCCCCCCchhHHHHHHHHHhcccHH
Confidence 999998422 67888999999875
No 7
>KOG0425|consensus
Probab=100.00 E-value=1.5e-38 Score=241.97 Aligned_cols=131 Identities=30% Similarity=0.602 Sum_probs=123.4
Q ss_pred hhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 5 SAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
+.+..-+.+++++|++. +|+|.|+| +|.|+||.|+..+.||.+||.+||+++|.|+||||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 44677889999999874 69999999 9999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCC-------------CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHH
Q psy6012 67 DGGTLNRIFYISGTVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYK 133 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~ 133 (168)
+. +|.+|+++|. |+|.|..|+++||++|+ +||.+||.++|+|-+||+.|++++++|.
T Consensus 84 y~---------~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiI-smL~~PN~~SPANVDAa~~~Ren~~Eyk 153 (171)
T KOG0425|consen 84 YE---------DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSII-SMLNSPNDESPANVDAAKEWRENPEEYK 153 (171)
T ss_pred CC---------CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHH-HHHcCCCCCCccchHHHHHHhhCHHHHH
Confidence 98 9999999995 57999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHhCccC
Q psy6012 134 KKCLPTMLAPES 145 (168)
Q Consensus 134 ~~~r~~~~~~~~ 145 (168)
++|+++++++.+
T Consensus 154 kkV~r~vr~s~e 165 (171)
T KOG0425|consen 154 KKVRRCVRRSQE 165 (171)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 8
>KOG0424|consensus
Probab=100.00 E-value=1.9e-38 Score=238.36 Aligned_cols=133 Identities=29% Similarity=0.544 Sum_probs=126.9
Q ss_pred CCCChhhhccHHHHHHHhhhC--------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEe
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES--------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~--------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~ 58 (168)
|| +.+..||+.|-..+.++ +|+|.|.| +|+||||.|++++.||++||++||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 66 67889999999999875 49999999 99999999999999999999999999999
Q ss_pred ccccCCcCCCCCccceeeccceEEeccCCCc--cccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHH
Q psy6012 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQA--WTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136 (168)
Q Consensus 59 t~i~HpnI~~~~~~~~~~~~G~icl~~l~~~--W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~ 136 (168)
+++|||||++ +|.||+++|++. |+|+.||.+||++| |.||..||+.+|+|.||..+|.+|+.+|+++|
T Consensus 79 ~pl~HPNVyp---------sgtVcLsiL~e~~~W~paitikqiL~gI-qdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrv 148 (158)
T KOG0424|consen 79 PPLFHPNVYP---------SGTVCLSILNEEKDWRPAITIKQILLGI-QDLLDTPNITSPAQTEAYTIYCQDRAEYEKRV 148 (158)
T ss_pred CCCcCCCcCC---------CCcEehhhhccccCCCchhhHHHHHHHH-HHHhcCCCCCCchhhHHHHHHhhCHHHHHHHH
Confidence 9999999999 999999999875 99999999999999 89999999999999999999999999999999
Q ss_pred HHHHhCccC
Q psy6012 137 LPTMLAPES 145 (168)
Q Consensus 137 r~~~~~~~~ 145 (168)
|.++++++.
T Consensus 149 r~qak~~a~ 157 (158)
T KOG0424|consen 149 RAQAKEYAK 157 (158)
T ss_pred HHHHHHhcc
Confidence 999999875
No 9
>KOG0416|consensus
Probab=100.00 E-value=2.1e-38 Score=244.06 Aligned_cols=136 Identities=61% Similarity=1.048 Sum_probs=129.1
Q ss_pred hhhccHHHHHHHhhhC------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCc
Q psy6012 6 AGKRRMDTDVIKLIES------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTL 71 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~~------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~ 71 (168)
.+.|||.+|+.+|+++ +++|.+.| +|||+||+++++|.+|++||++.|+|.|.++||||||+.
T Consensus 3 ~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe--- 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE--- 79 (189)
T ss_pred CcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh---
Confidence 4699999999999986 46778888 899999999999999999999999999999999999999
Q ss_pred cceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCCCC
Q psy6012 72 NRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNPGL 149 (168)
Q Consensus 72 ~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~~~ 149 (168)
.+|.||++.+++.|+|.+++..|+..++.+||..||+.+|+|.+||.+|.+++++|.++||+++++||..-.+
T Consensus 80 -----~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~ 152 (189)
T KOG0416|consen 80 -----ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEAL 152 (189)
T ss_pred -----ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999877643
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.7e-36 Score=227.64 Aligned_cols=121 Identities=36% Similarity=0.755 Sum_probs=109.9
Q ss_pred cHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCc
Q psy6012 10 RMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTL 71 (168)
Q Consensus 10 Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~ 71 (168)
||++|+++|+.. +|+++|.| +|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~--- 77 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE--- 77 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T---
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc---
Confidence 899999999653 69999999 999999999999999999999999999999999999998
Q ss_pred cceeeccceEEeccCCC-ccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 72 NRIFYISGTVCLDVINQ-AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 72 ~~~~~~~G~icl~~l~~-~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
+|.||+++|.. .|+|++++.++|.+| ++||.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 78 ------~G~icl~~l~~~~W~p~~~i~~il~~i-~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 78 ------NGRICLDILNPESWSPSYTIESILLSI-QSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp ------TSBBGHGGGTTTTC-TTSHHHHHHHHH-HHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ------cccchhhhhhcccCCcccccccHHHHH-HHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999999985 599999999999999 699999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.9e-35 Score=221.47 Aligned_cols=122 Identities=35% Similarity=0.736 Sum_probs=116.8
Q ss_pred ccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCc
Q psy6012 9 RRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTL 71 (168)
Q Consensus 9 ~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~ 71 (168)
|||++|++++++. +|+++|.| +|||+||.|+++|.||++||++||+|+|.|+++||||+.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~--- 78 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDE--- 78 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCC---
Confidence 6999999999864 69999999 899999999999999999999999999999999999998
Q ss_pred cceeeccceEEeccCCCc-cccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 72 NRIFYISGTVCLDVINQA-WTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 72 ~~~~~~~G~icl~~l~~~-W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
+|.||++++... |+|++++.++|.+| +++|.+|+.++|+|.+||.+|++|+++|.++|++++
T Consensus 79 ------~G~icl~~l~~~~W~p~~~l~~il~~i-~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 79 ------NGKICLSILKTHGWSPAYTLRTVLLSL-QSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred ------CCCCchhhcCCCCcCCcCcHHHHHHHH-HHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999877 99999999999999 699999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.8e-34 Score=219.72 Aligned_cols=126 Identities=34% Similarity=0.690 Sum_probs=120.2
Q ss_pred ccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCC
Q psy6012 9 RRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGT 70 (168)
Q Consensus 9 ~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~ 70 (168)
+||++|+++++++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.++++||||+.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-- 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-- 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC--
Confidence 5999999998753 69999999 999999999999999999999999999999999999998
Q ss_pred ccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 71 LNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 71 ~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
+|.||++++. ++|+|++++.++|.+| +.+|.+|+.++|+|.+|+.+|++|++.|.++|++++++++
T Consensus 79 -------~G~icl~~l~~~~W~p~~~l~~il~~i-~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 79 -------SGEICLDILKQEKWSPATTLETVLLSI-QSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred -------CCCEehhhcCCCCCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999998 8999999999999999 6999999999999999999999999999999999999763
No 13
>KOG0426|consensus
Probab=100.00 E-value=1e-34 Score=215.79 Aligned_cols=132 Identities=25% Similarity=0.502 Sum_probs=124.9
Q ss_pred CCCChhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
|+ ..|.|||++|+++|..+ +|+|.|.| +|+|+||+|..++.||.+||.+||+++|...+|
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 55 67999999999999864 69999999 999999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccCC-------------CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCH
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKP 129 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~ 129 (168)
||||+. +|+||+++|. |+|+|..+++.||++++ +||.+||-++.+|.+|++++++|+
T Consensus 79 HPNiy~---------dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~-SMLaEPNdESgANvdA~~mWRe~R 148 (165)
T KOG0426|consen 79 HPNIYP---------DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDACKMWREDR 148 (165)
T ss_pred cCcccC---------CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHH-HHHcCCCcccCcccHHHHHHHHhH
Confidence 999998 9999999984 68999999999999996 999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcc
Q psy6012 130 DEYKKKCLPTMLAPE 144 (168)
Q Consensus 130 ~~f~~~~r~~~~~~~ 144 (168)
++|++.|+..++|..
T Consensus 149 ~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 149 EEFEKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
No 14
>KOG0422|consensus
Probab=100.00 E-value=4.3e-34 Score=213.85 Aligned_cols=130 Identities=27% Similarity=0.568 Sum_probs=124.4
Q ss_pred hhccHHHHHHHhhhC----------------CcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCC
Q psy6012 7 GKRRMDTDVIKLIES----------------KHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGG 69 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~----------------~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~ 69 (168)
|.|||.+|+.+|+++ .|.+.|.| +-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe- 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE- 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC-
Confidence 789999999999874 59999999 889999999999999999999999999999999999999
Q ss_pred CccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 70 TLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 70 ~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
.|.||+.++. |+|.|++...+||++++ .|+.+|++..|++.|+|.+|.+|+..|.+.|.++++++++.
T Consensus 82 --------~gqvClPiis~EnWkP~T~teqVlqaLi-~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 82 --------KGQVCLPIISAENWKPATRTEQVLQALI-ALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred --------CCceeeeeeecccccCcccHHHHHHHHH-HHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 8999999985 89999999999999997 99999999999999999999999999999999999998764
No 15
>KOG0421|consensus
Probab=100.00 E-value=6.3e-34 Score=214.19 Aligned_cols=126 Identities=33% Similarity=0.626 Sum_probs=120.1
Q ss_pred hhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCC
Q psy6012 7 GKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGG 69 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~ 69 (168)
..+||++|+..|+++ +|.++|.| +|+|+|-.|++.+.||.+||++||+|+|.|+.||||||.
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~- 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL- 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc-
Confidence 457999999999885 59999999 999999999999999999999999999999999999998
Q ss_pred CccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 70 TLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 70 ~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
.|.||+|+|++.|+..++++.||++| |+||-+||..+|+|..||+++. |+++|.+.+.+..++.
T Consensus 109 --------~GnIcLDILkdKWSa~YdVrTILLSi-QSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 --------SGNICLDILKDKWSAVYDVRTILLSI-QSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred --------cccchHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999 8999999999999999999997 9999999999887653
No 16
>KOG0420|consensus
Probab=100.00 E-value=3.3e-33 Score=215.52 Aligned_cols=133 Identities=30% Similarity=0.568 Sum_probs=124.2
Q ss_pred ChhhhccHHHHHHHhhh-----------------CCcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCc
Q psy6012 4 PSAGKRRMDTDVIKLIE-----------------SKHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPN 65 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~-----------------~~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~Hpn 65 (168)
-|+|+-|+++|+.+|.. .+.+++|.. .+.|.||.|+|.+.+|+.||+.||+|+++|+|||||
T Consensus 26 ~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 26 VSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred ccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 47889999999999853 137889999 899999999999999999999999999999999999
Q ss_pred CCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 66 IDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 66 I~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
|+. +|.||+++|+++|+|+.++.+|+.++ +.||.+|+.+||+|.+||..+++|++.|...||..+..+..
T Consensus 106 Id~---------~GnVCLnILRedW~P~lnL~sIi~GL-~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 106 IDL---------DGNVCLNILREDWRPVLNLNSIIYGL-QFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCC---------cchHHHHHHHhcCccccchHHHHHHH-HHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 998 99999999999999999999999999 69999999999999999999999999999999999987654
Q ss_pred C
Q psy6012 146 N 146 (168)
Q Consensus 146 ~ 146 (168)
.
T Consensus 176 ~ 176 (184)
T KOG0420|consen 176 G 176 (184)
T ss_pred C
Confidence 3
No 17
>KOG0423|consensus
Probab=99.95 E-value=3.8e-28 Score=188.00 Aligned_cols=133 Identities=23% Similarity=0.485 Sum_probs=123.6
Q ss_pred ChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 4 PSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
|.-..|.+.+|++.|..+ ...+.|.| ||||+||.|++.+.+..|||.+||+-.|+|+||||||
T Consensus 8 pp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV 87 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV 87 (223)
T ss_pred ChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence 455678899999998764 35688999 9999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
.. +|+||.+.|+.+|+|..+|..||+.| ++|+-.|++++.+|.+|.++..+++++|.++||-++.-++..
T Consensus 88 aa---------NGEICVNtLKkDW~p~LGirHvLlti-kCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 88 AA---------NGEICVNTLKKDWNPSLGIRHVLLTI-KCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred cc---------CceehhhhhhcccCcccchhhHhhhh-heeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 98 99999999999999999999999999 799999999999999999999999999999999998876654
No 18
>KOG0427|consensus
Probab=99.89 E-value=5.2e-23 Score=153.09 Aligned_cols=104 Identities=21% Similarity=0.551 Sum_probs=93.4
Q ss_pred hhhccHHHHHHHhhhC--------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccc-cCCcCCC
Q psy6012 6 AGKRRMDTDVIKLIES--------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKM-YHPNIDG 68 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~~--------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i-~HpnI~~ 68 (168)
+|.+||++|+.+++.+ .|.+-+.| ||.|+|.+|++.+.||+.||++.|.|-|..++ .||+|+.
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 5788999999999875 69999999 99999999999999999999999999999876 8999998
Q ss_pred CCccceeeccceEEeccCCCccccccchhchHHhHHHHHhc-CCCCCCCccH
Q psy6012 69 GTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLT-YPNPIDPLNG 119 (168)
Q Consensus 69 ~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~-~p~~~~p~n~ 119 (168)
+|.||+++|.+.|+|++++.+|.++|+ +||+ ......|.+.
T Consensus 95 ---------NGHICL~iL~d~WsPAmsv~SvClSIl-SMLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 95 ---------NGHICLDILYDSWSPAMSVQSVCLSIL-SMLSSSKEKQRPTDN 136 (161)
T ss_pred ---------CCeEEEEeecccCCcchhhHHHHHHHH-HHHccCccccCCCcc
Confidence 999999999999999999999999998 5554 5555556543
No 19
>KOG0894|consensus
Probab=99.84 E-value=1.3e-20 Score=150.50 Aligned_cols=97 Identities=25% Similarity=0.513 Sum_probs=86.0
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|++ .+|.+||++|+..|.++ +||.+|.| +|||+||.|+.+|.||++||++||.|+..|+
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--- 76 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--- 76 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC---
Confidence 443 57899999999999985 69999999 9999999999999999999999999999986
Q ss_pred CcCCCCCccceeeccceEEeccCC---CccccccchhchHHhHHHHHhcC
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVIN---QAWTALYDLSNIFECFLPQLLTY 110 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~---~~W~p~~~i~~il~~i~~~ll~~ 110 (168)
|++|-.+-++|+++-+ +.|+|.+++.+||.+++ +++.+
T Consensus 77 --------NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLl-SFM~e 117 (244)
T KOG0894|consen 77 --------NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLL-SFMTE 117 (244)
T ss_pred --------CCceecCceEEEeccccCcCcCCCcccHHHHHHHHH-HHHhc
Confidence 5677778899998875 78999999999999997 55543
No 20
>KOG0429|consensus
Probab=99.84 E-value=9.9e-21 Score=151.62 Aligned_cols=132 Identities=20% Similarity=0.388 Sum_probs=117.3
Q ss_pred CcEEEEec-CCCCCCcEEEEEEEcCCCCCC--CCCeeeEeccccCCcCCCCCccceeeccceEEeccCCCcccc-ccchh
Q psy6012 22 KHEVTILG-AVFYYGGVWKVRVHLPEHYSS--KSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA-LYDLS 97 (168)
Q Consensus 22 ~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~--~pP~v~F~t~i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~~i~ 97 (168)
.|-++|++ .+.|+||+|+|+|.+|++||. +.|+|-|.+.++||+|++ .++++|++.....|+. ..+|.
T Consensus 50 ~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp--------~skeLdl~raf~eWRk~ehhiw 121 (258)
T KOG0429|consen 50 LWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP--------KSKELDLNRAFPEWRKEEHHIW 121 (258)
T ss_pred eEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC--------CccceeHhhhhhhhhccccHHH
Confidence 59999999 899999999999999999994 579999999999999999 8999999988777998 45688
Q ss_pred chHHhHHHHHhcCCCCCCC--ccHHHHHHHhhCHHHHHHHHHHHHhCccCC----CCCccCCcccccCccc
Q psy6012 98 NIFECFLPQLLTYPNPIDP--LNGDAAAMYLHKPDEYKKKCLPTMLAPESN----PGLPRARRVTTMPWEQ 162 (168)
Q Consensus 98 ~il~~i~~~ll~~p~~~~p--~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~ 162 (168)
.+|..+ |.++++|+-..+ .|++|+.+|++++++|.++|+++++.+.+- |..+....|...|||.
T Consensus 122 qvL~yl-qriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~iyD~ppteDPhyI~~ep~~a 191 (258)
T KOG0429|consen 122 QVLVYL-QRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSMIYDEPPTEDPHYIRFEPWDA 191 (258)
T ss_pred HHHHHH-HHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeEEeecCCh
Confidence 889888 899999987766 599999999999999999999999887543 4446677888889885
No 21
>KOG0428|consensus
Probab=99.71 E-value=3.7e-17 Score=133.09 Aligned_cols=98 Identities=22% Similarity=0.463 Sum_probs=85.9
Q ss_pred ChhhhccHHHHHHHhhh--------------CCcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 4 PSAGKRRMDTDVIKLIE--------------SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~--------------~~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
.++|.|||++|..+|+. -+|+.+|.| +|-|+||+|+.+|.||.+||++||.+-.+|+
T Consensus 9 KnpaVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp------- 81 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP------- 81 (314)
T ss_pred cCHHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC-------
Confidence 37899999999999974 169999999 9999999999999999999999999988885
Q ss_pred CCCccceeeccceEEeccCC---CccccccchhchHHhHHHHHhcCCC
Q psy6012 68 GGTLNRIFYISGTVCLDVIN---QAWTALYDLSNIFECFLPQLLTYPN 112 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~---~~W~p~~~i~~il~~i~~~ll~~p~ 112 (168)
|++|-.+-.||+++-. |.|.|+|+|+..|++++..|=+.|+
T Consensus 82 ----NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 82 ----NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ----CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 5677778899999885 7899999999999999855555664
No 22
>KOG0895|consensus
Probab=99.34 E-value=7.8e-13 Score=124.84 Aligned_cols=77 Identities=22% Similarity=0.548 Sum_probs=70.6
Q ss_pred cEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc--ccCCcCCCCCccceeeccceEEeccCC-------Cccc
Q psy6012 23 HEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK--MYHPNIDGGTLNRIFYISGTVCLDVIN-------QAWT 91 (168)
Q Consensus 23 W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~--i~HpnI~~~~~~~~~~~~G~icl~~l~-------~~W~ 91 (168)
..++|.| +|||.+|.|.|.+.||.+||..||.|...+. .++||.+. +|+||+++|+ |.|+
T Consensus 883 ~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~---------~g~vc~s~l~tw~g~~~e~w~ 953 (1101)
T KOG0895|consen 883 LRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE---------DGKVCLSLLNTWHGRGNEVWN 953 (1101)
T ss_pred HHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc---------ccceehhhhccccCCCccccC
Confidence 4688999 9999999999999999999999999999975 58999998 9999999996 6799
Q ss_pred cccchhchHHhHHHHHhc
Q psy6012 92 ALYDLSNIFECFLPQLLT 109 (168)
Q Consensus 92 p~~~i~~il~~i~~~ll~ 109 (168)
|+.++.++|.+| |.|+.
T Consensus 954 ~~s~~lq~l~s~-q~l~l 970 (1101)
T KOG0895|consen 954 PSSSILQVLVSI-QGLVL 970 (1101)
T ss_pred cchhHHHHHHHh-hhhhc
Confidence 999999999999 78764
No 23
>KOG0896|consensus
Probab=99.19 E-value=1.1e-11 Score=92.83 Aligned_cols=89 Identities=16% Similarity=0.366 Sum_probs=75.0
Q ss_pred HhhhCCcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCccceeeccceEEeccC--CCcccc
Q psy6012 17 KLIESKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI--NQAWTA 92 (168)
Q Consensus 17 ~l~~~~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~~~~~~~~G~icl~~l--~~~W~p 92 (168)
|+....|..+|.| .|+||+.+|.++|.+.++||..||+|+|.+++.-+.|+. .+|.|.-..+ -.+|..
T Consensus 35 dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~--------~~g~Vd~~~i~~L~~W~~ 106 (138)
T KOG0896|consen 35 DMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNS--------SNGVVDPRDITVLARWQR 106 (138)
T ss_pred cceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccccc--------CCCccCccccchhhcccc
Confidence 3334479999999 899999999999999999999999999999999999998 6888765333 368999
Q ss_pred ccchhchHHhHHHHHhcCCCC
Q psy6012 93 LYDLSNIFECFLPQLLTYPNP 113 (168)
Q Consensus 93 ~~~i~~il~~i~~~ll~~p~~ 113 (168)
.++++.+|..+.+.++..-|.
T Consensus 107 ~y~~~~vl~~lr~~m~~~eN~ 127 (138)
T KOG0896|consen 107 SYSIKMVLGQLRKEMMSKENR 127 (138)
T ss_pred cchhhHHHHhhhHHHHHHHhh
Confidence 999999999996555554343
No 24
>KOG0895|consensus
Probab=99.07 E-value=3.4e-10 Score=107.28 Aligned_cols=93 Identities=20% Similarity=0.502 Sum_probs=80.2
Q ss_pred ccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc---ccCCcCCC
Q psy6012 9 RRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK---MYHPNIDG 68 (168)
Q Consensus 9 ~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~---i~HpnI~~ 68 (168)
+|+++|+.-+-++ ..++.|.| +|||++|+|.|.|.||..||..||.|.++|. .+.||.+.
T Consensus 285 krv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn 364 (1101)
T KOG0895|consen 285 KKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYN 364 (1101)
T ss_pred HHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCccc
Confidence 4777887766543 47899999 9999999999999999999999999999987 47888887
Q ss_pred CCccceeeccceEEeccCC-------Cccccc-cchhchHHhHHHHHhcCC
Q psy6012 69 GTLNRIFYISGTVCLDVIN-------QAWTAL-YDLSNIFECFLPQLLTYP 111 (168)
Q Consensus 69 ~~~~~~~~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~~ll~~p 111 (168)
+|+||+++|. +.|++. .++.++|..| |.++.+-
T Consensus 365 ---------~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sI-Q~Li~~e 405 (1101)
T KOG0895|consen 365 ---------DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESI-QGLILNE 405 (1101)
T ss_pred ---------CceEEeeeeeecccccccCCCccccchhhhhhhh-hhhhccc
Confidence 9999999883 689997 8999999999 7887643
No 25
>KOG0897|consensus
Probab=98.29 E-value=1.5e-06 Score=63.69 Aligned_cols=99 Identities=14% Similarity=0.260 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCCCCCeeeEeccccCCcCCCCCccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCC--CCCC
Q psy6012 39 KVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYP--NPID 115 (168)
Q Consensus 39 ~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p--~~~~ 115 (168)
-+.+.|+++||+.||.+|-.. |.++. +--..+|.||+.++. ++|+.+++++.++.+|. ..+..- ....
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~----p~~~~----Gyvl~ggAIcmellt~qgwssay~Ve~vi~qia-atlVkG~~ri~~ 84 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVK----PLEDE----GYVLEGGAICMELLTKQGWSSAYEVERVIMQIA-ATLVKGGARIEF 84 (122)
T ss_pred EeeeecccCCCCCCCcceeee----ecccC----CEEecchhhHHHHHccccccchhhHHHHHHHHH-HHhhccceeEec
Confidence 356789999999999987665 55554 344569999999995 78999999999999995 554332 3345
Q ss_pred CccHHHHHHHhh--CHHHHHHHHHHHHhCccCCC
Q psy6012 116 PLNGDAAAMYLH--KPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 116 p~n~~aa~~y~~--d~~~f~~~~r~~~~~~~~~~ 147 (168)
+++.+-. +|.. -.+.|+..++-..+-.+-.|
T Consensus 85 ~a~k~sk-~~s~~qa~~sfksLv~~heksg~~t~ 117 (122)
T KOG0897|consen 85 PAEKSSK-LYSHSQAQQSFKSLVQIHEKSGWVTP 117 (122)
T ss_pred Ccchhhh-HhhHHHHHHHHHHHHHHHHhcCCcCC
Confidence 5544433 5533 35678888887776554444
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.28 E-value=3e-06 Score=63.79 Aligned_cols=67 Identities=19% Similarity=0.518 Sum_probs=58.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEeccc---cCCcCCCCCccceeeccceEEe---ccCCCccccccchhchHHhHHHHH
Q psy6012 34 YGGVWKVRVHLPEHYSSKSPSIGFKNKM---YHPNIDGGTLNRIFYISGTVCL---DVINQAWTALYDLSNIFECFLPQL 107 (168)
Q Consensus 34 ~Gg~f~~~i~fp~~YP~~pP~v~F~t~i---~HpnI~~~~~~~~~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~~l 107 (168)
.|+.+.++|.||++||..||.|....+. +=|+|+. +|.+|+ ...-+.|.|...+.++|.+.. .+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~---------~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~-~l 103 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES---------DGKLCLLDEELVLDPWDPEGIIADCLERAI-RL 103 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC---------CCeEEEecCCcccCccCHHHHHHHHHHHHH-HH
Confidence 7999999999999999999999988554 6899998 999999 676788999999999999984 66
Q ss_pred hcC
Q psy6012 108 LTY 110 (168)
Q Consensus 108 l~~ 110 (168)
|.+
T Consensus 104 L~~ 106 (133)
T PF14461_consen 104 LED 106 (133)
T ss_pred HHH
Confidence 653
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.98 E-value=6.6e-06 Score=61.21 Aligned_cols=73 Identities=19% Similarity=0.479 Sum_probs=50.1
Q ss_pred EEEec--CCCCCCcEE--EEEEEcCCCCCCCCCeeeEecccc-----CCcCCCCCccceeeccceEEeccCCCcccc-cc
Q psy6012 25 VTILG--AVFYYGGVW--KVRVHLPEHYSSKSPSIGFKNKMY-----HPNIDGGTLNRIFYISGTVCLDVINQAWTA-LY 94 (168)
Q Consensus 25 ~~i~G--~tpY~Gg~f--~~~i~fp~~YP~~pP~v~F~t~i~-----HpnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~ 94 (168)
+.+.| .-.|.|..| .+.|.+|.+||..||.|....... +.+|+. +|+|.+..|. +|+. ..
T Consensus 33 L~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~---------~G~v~~pyL~-~W~~~~s 102 (121)
T PF05743_consen 33 LCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS---------NGRVYLPYLQ-NWNPPSS 102 (121)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T---------TSBB-SHHHH-T--TTTS
T ss_pred EEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC---------CCCEeCchhc-cCCCCCC
Confidence 45566 558999988 677889999999999998875432 449998 9999988874 7888 67
Q ss_pred chhchHHhHHHHHh
Q psy6012 95 DLSNIFECFLPQLL 108 (168)
Q Consensus 95 ~i~~il~~i~~~ll 108 (168)
++.+++..+. ..|
T Consensus 103 ~L~~lv~~l~-~~F 115 (121)
T PF05743_consen 103 NLVDLVQELQ-AVF 115 (121)
T ss_dssp -HHHHHHHHH-HCC
T ss_pred CHHHHHHHHH-HHH
Confidence 7777777663 444
No 28
>KOG2391|consensus
Probab=97.17 E-value=0.00098 Score=57.37 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=57.3
Q ss_pred EEec--CCCCCCcEE--EEEEEcCCCCCCCCCeeeEecc-----ccCCcCCCCCccceeeccceEEeccCCCcccc-ccc
Q psy6012 26 TILG--AVFYYGGVW--KVRVHLPEHYSSKSPSIGFKNK-----MYHPNIDGGTLNRIFYISGTVCLDVINQAWTA-LYD 95 (168)
Q Consensus 26 ~i~G--~tpY~Gg~f--~~~i~fp~~YP~~pP~v~F~t~-----i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~~ 95 (168)
.+.| .++|.|..| .+.|++.+.||..||.+..... --|-+|+. +|.|.+..|. +|.+ +.+
T Consensus 54 ~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~---------nG~V~LPYLh-~W~~pssd 123 (365)
T KOG2391|consen 54 QLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP---------NGKVYLPYLH-NWDPPSSD 123 (365)
T ss_pred hccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC---------CCeEechhhc-cCCCccch
Confidence 3445 569999888 5788999999999999977632 14999998 9999999985 7887 667
Q ss_pred hhchHHhHHHHHhcC
Q psy6012 96 LSNIFECFLPQLLTY 110 (168)
Q Consensus 96 i~~il~~i~~~ll~~ 110 (168)
+..++.-++ ..|.+
T Consensus 124 Lv~Liq~l~-a~f~~ 137 (365)
T KOG2391|consen 124 LVGLIQELI-AAFSE 137 (365)
T ss_pred HHHHHHHHH-HHhcC
Confidence 777777765 55543
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.63 E-value=0.063 Score=41.16 Aligned_cols=85 Identities=18% Similarity=0.456 Sum_probs=40.2
Q ss_pred hccHHHHHHHhhh---------CCcEEEEec--CCCCCCcE----------EEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 8 KRRMDTDVIKLIE---------SKHEVTILG--AVFYYGGV----------WKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 8 ~~Rl~~d~~~l~~---------~~W~~~i~G--~tpY~Gg~----------f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
..||+.|++.|+. +.|--.=.- ||-|.|-+ |.+++.+|..||..||.+..- -.
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP------eL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP------EL 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G------GG
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc------cc
Confidence 4589999999864 356432222 77666643 345566799999999998654 22
Q ss_pred CCCCccceeeccceEEeccCC-Cccc---cccchhchH
Q psy6012 67 DGGTLNRIFYISGTVCLDVIN-QAWT---ALYDLSNIF 100 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~-~~W~---p~~~i~~il 100 (168)
+.. ----|-.|+||++.-. .-|. |.++|...|
T Consensus 100 dGK--TaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGK--TAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT---SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCc--hhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 220 1112348999998753 2343 456665544
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=92.80 E-value=0.12 Score=36.37 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc
Q psy6012 30 AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK 60 (168)
Q Consensus 30 ~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~ 60 (168)
.+.-....+.+.+.||++||..+|.|.....
T Consensus 43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 43 FESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp CTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 4455667889999999999999999987764
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=91.87 E-value=0.21 Score=34.89 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.5
Q ss_pred CcEEEEEEEcCCCCCCCCCeeeEec
Q psy6012 35 GGVWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 35 Gg~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
.-.+.+.+.||++||..+|.|.+..
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3458899999999999999998875
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=90.88 E-value=1.2 Score=33.24 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEEEcCCCCCCCCCeeeEeccc
Q psy6012 31 VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKM 61 (168)
Q Consensus 31 tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i 61 (168)
+.|.+..-.+-|.+|+.||..+|.+.+..+-
T Consensus 37 G~y~~~~~dili~iP~gYP~~~~DmfY~~P~ 67 (122)
T PF14462_consen 37 GKYNHNEVDILILIPPGYPDAPLDMFYVYPP 67 (122)
T ss_pred CccCccceEEEEECCCCCCCCCCCcEEECCc
Confidence 4588889999999999999998877776543
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=88.82 E-value=0.63 Score=36.29 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=47.5
Q ss_pred CCcEEE---EEEEcCCCCCCCCCeeeEecccc---CCcCCCCCccceeeccceEEeccCC-CccccccchhchHHhHHHH
Q psy6012 34 YGGVWK---VRVHLPEHYSSKSPSIGFKNKMY---HPNIDGGTLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQ 106 (168)
Q Consensus 34 ~Gg~f~---~~i~fp~~YP~~pP~v~F~t~i~---HpnI~~~~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ 106 (168)
.+|+.. +.|.|+.+||..+|.|.+.-+-| +|++... ..-.-..+|+---. ..|.+..++..+|..|. .
T Consensus 48 ~~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~----~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~-~ 122 (162)
T PF14457_consen 48 PVGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPG----PEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLF-D 122 (162)
T ss_pred CCCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCC----CCCCCccceEecCCHHHhhhccCHHHHHHHHH-H
Confidence 345553 56899999999999877775433 5666650 00001668986443 46888999999998884 5
Q ss_pred Hhc
Q psy6012 107 LLT 109 (168)
Q Consensus 107 ll~ 109 (168)
-|.
T Consensus 123 Wl~ 125 (162)
T PF14457_consen 123 WLR 125 (162)
T ss_pred HHH
Confidence 553
No 34
>KOG3357|consensus
Probab=71.69 E-value=9.6 Score=28.95 Aligned_cols=76 Identities=22% Similarity=0.526 Sum_probs=47.3
Q ss_pred ccHHHHHHHhhh---------CCcEEEEec--CCCCCCcE----------EEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 9 RRMDTDVIKLIE---------SKHEVTILG--AVFYYGGV----------WKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 9 ~Rl~~d~~~l~~---------~~W~~~i~G--~tpY~Gg~----------f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
.||+.|++.|+. +.|--.-.- ||-|-|.+ |-+++.+|-.||..+|.+.. |-+|
T Consensus 30 qrlkeey~sli~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial------peld 103 (167)
T KOG3357|consen 30 QRLKEEYQSLIAYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL------PELD 103 (167)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc------cccC
Confidence 589999998864 246433333 77777753 34555679999999998654 4444
Q ss_pred CCCccceeeccceEEeccC-CCcccc
Q psy6012 68 GGTLNRIFYISGTVCLDVI-NQAWTA 92 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l-~~~W~p 92 (168)
.. ---.|-.|.||+..- +.-|..
T Consensus 104 gk--takmyrggkiclt~hfkplwar 127 (167)
T KOG3357|consen 104 GK--TAKMYRGGKICLTDHFKPLWAR 127 (167)
T ss_pred ch--hhhhhcCceEeeccccchhhhh
Confidence 31 112244899998643 344654
No 35
>KOG4018|consensus
Probab=50.07 E-value=15 Score=30.08 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=24.1
Q ss_pred cEEEEec----CCCCCCcEEEEEEEcCCCCCCCCCee
Q psy6012 23 HEVTILG----AVFYYGGVWKVRVHLPEHYSSKSPSI 55 (168)
Q Consensus 23 W~~~i~G----~tpY~Gg~f~~~i~fp~~YP~~pP~v 55 (168)
+.++|.- ..-|.| .+.+.+.++++||..+|-+
T Consensus 33 f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 33 FEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred ceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence 3455544 224445 8899999999999999998
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=48.80 E-value=25 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=25.4
Q ss_pred ccccC---CcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCC
Q psy6012 59 NKMYH---PNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYP 111 (168)
Q Consensus 59 t~i~H---pnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p 111 (168)
|++|| +||.. +|.||+.... .|.....+.+..+...++..+
T Consensus 90 T~Ly~aPf~NV~~---------~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYS---------NGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCC---------CCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 45555 59987 9999998743 234444455666644555544
No 37
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=48.49 E-value=25 Score=28.00 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC-----CCCCccceeeccceEEeccC
Q psy6012 34 YGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI-----DGGTLNRIFYISGTVCLDVI 86 (168)
Q Consensus 34 ~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI-----~~~~~~~~~~~~G~icl~~l 86 (168)
+.|.|.|+-.+|--||.++|.|.|.- +++.- ....|-.++|-++.+|-.+.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V--~~~~~~~~~~~~~~lttQlyF~~d~~~~V~ 140 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV--HPDATSATSGGNVAHTGQLFFDEDLIEEVY 140 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE--EcCCeecccCcceeEEEeEeeChhhhhHhh
Confidence 45999999999999999999999983 33322 01123344555555554443
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=47.69 E-value=27 Score=26.34 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.9
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeeEe
Q psy6012 34 YGGVWKVRVHLPEHYS-SKSPSIGFK 58 (168)
Q Consensus 34 ~Gg~f~~~i~fp~~YP-~~pP~v~F~ 58 (168)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3599999999999999 999999997
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=47.09 E-value=24 Score=30.70 Aligned_cols=25 Identities=28% Similarity=0.748 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 38 WKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 38 f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|-+.|.+|..||...|.++|.+ +||
T Consensus 308 flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 308 FLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred EEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 5566778999999999999986 455
No 40
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=45.96 E-value=36 Score=28.96 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=45.8
Q ss_pred hhhhccHHHHHHHhhhCCcEEEEecCC---------CCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCcccee
Q psy6012 5 SAGKRRMDTDVIKLIESKHEVTILGAV---------FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIF 75 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~~W~~~i~G~t---------pY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~~~~~ 75 (168)
+....+|.+|+.++-.++- +.|..++ .-+.....++|.+|.+||.++|.+.-.-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl-~~i~~d~~ls~i~l~~~D~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------------- 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL-VQIQFDDDLSTIKLKIFDSSRQHYLELKLPSNYPFEPPSCSLDLPI-------------- 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC-EEEEE-CCCSEEEEEEETTCEEEEEEEETTTTTTTSEEEECS-TTS--------------
T ss_pred cHHHHHHHHHHHHhccccc-eEEecCCCccEEEEEEEcCCceEEEEEEECCCCCCCCceeeCCCCc--------------
Confidence 4566789999998842211 1221111 112267789999999999999974322211
Q ss_pred eccceEEeccCCCcccc-ccchhchHHhHHHHHh
Q psy6012 76 YISGTVCLDVINQAWTA-LYDLSNIFECFLPQLL 108 (168)
Q Consensus 76 ~~~G~icl~~l~~~W~p-~~~i~~il~~i~~~ll 108 (168)
.+...|.+ ..++.+++..+. ..+
T Consensus 163 ---------~~~~~w~~~~ssL~~v~~qF~-~~l 186 (291)
T PF09765_consen 163 ---------PFSLSWSPSQSSLKDVVQQFQ-EAL 186 (291)
T ss_dssp ----------HHHHHHCHT-SHHHHHHHHH-HHH
T ss_pred ---------chhhhhcccccCHHHHHHHHH-HHH
Confidence 11235888 778888888874 443
No 41
>KOG0309|consensus
Probab=40.91 E-value=46 Score=32.39 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=22.4
Q ss_pred CCCCcEE-EEEEEcCCCCCCC-CCeeeEecc
Q psy6012 32 FYYGGVW-KVRVHLPEHYSSK-SPSIGFKNK 60 (168)
Q Consensus 32 pY~Gg~f-~~~i~fp~~YP~~-pP~v~F~t~ 60 (168)
+-.|-+| ++.|.||.+||.+ +|+++|..+
T Consensus 461 ~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 461 RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3345555 7889999999975 799999854
No 42
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=40.80 E-value=23 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.8
Q ss_pred CcEEEEecCCCCCCcEEEE
Q psy6012 22 KHEVTILGAVFYYGGVWKV 40 (168)
Q Consensus 22 ~W~~~i~G~tpY~Gg~f~~ 40 (168)
+|.|.|=|+..|+|-.|.|
T Consensus 2 kWkC~iCg~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICGKPIYEGQLFTF 20 (101)
T ss_pred ceEEEecCCeeeecceEEE
Confidence 6999999999999999988
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=37.15 E-value=49 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=24.9
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeeEeccccCCcC
Q psy6012 35 GGVWKVRVHLPEHYS-----SKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 35 Gg~f~~~i~fp~~YP-----~~pP~v~F~t~i~HpnI 66 (168)
.|.|.|+-.+|--|| ..||.|.|. ++++..
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~--V~~~g~ 106 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS--VFARGL 106 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE--EECCCc
Confidence 589999999999999 899999997 344444
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=28.05 E-value=90 Score=27.24 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeeeEe-ccccCCcC
Q psy6012 32 FYYGGVWKVRVHLPEHYSSKSPSIGFK-NKMYHPNI 66 (168)
Q Consensus 32 pY~Gg~f~~~i~fp~~YP~~pP~v~F~-t~i~HpnI 66 (168)
||.|-..+-+|.|...+|..||-+.|- ..-|+|..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~ 96 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP 96 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh
Confidence 888888888999999999999999996 33477743
No 45
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.15 E-value=83 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeeEe
Q psy6012 34 YGGVWKVRVHLPEHYSS-----KSPSIGFK 58 (168)
Q Consensus 34 ~Gg~f~~~i~fp~~YP~-----~pP~v~F~ 58 (168)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 88888887
No 46
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.06 E-value=1e+02 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=23.2
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeeEeccccCCcC
Q psy6012 35 GGVWKVRVHLPEHYSS-----KSPSIGFKNKMYHPNI 66 (168)
Q Consensus 35 Gg~f~~~i~fp~~YP~-----~pP~v~F~t~i~HpnI 66 (168)
.|.|.|+-.+|--||. .||.|.|. |+||..
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~--V~~~g~ 126 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW--VFARGL 126 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE--EECCCc
Confidence 4889999999999995 88888776 344443
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.19 E-value=50 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.6
Q ss_pred hhccHHHHHHHhhh
Q psy6012 7 GKRRMDTDVIKLIE 20 (168)
Q Consensus 7 a~~Rl~~d~~~l~~ 20 (168)
-.|||++|+++|..
T Consensus 20 eNrRL~ke~~eLra 33 (44)
T smart00340 20 ENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHh
Confidence 46899999999864
No 48
>KOG0680|consensus
Probab=23.03 E-value=72 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=24.8
Q ss_pred hccHHHHHHHhhhCCcEEEEec--C---CCCCCcE
Q psy6012 8 KRRMDTDVIKLIESKHEVTILG--A---VFYYGGV 37 (168)
Q Consensus 8 ~~Rl~~d~~~l~~~~W~~~i~G--~---tpY~Gg~ 37 (168)
..||.+|++.|....|.|.+.- + -+|+||.
T Consensus 334 ~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~ 368 (400)
T KOG0680|consen 334 RQRLARELRSLLPADWEVSVSVPEDPITFAWEGGS 368 (400)
T ss_pred HHHHHHHHHhhCCccceEEEecCCCcceeeehhcc
Confidence 4699999999999999998877 2 1678876
No 49
>KOG3203|consensus
Probab=22.85 E-value=50 Score=25.77 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=12.1
Q ss_pred ccccCCcCCCCCccceeeccceEEe
Q psy6012 59 NKMYHPNIDGGTLNRIFYISGTVCL 83 (168)
Q Consensus 59 t~i~HpnI~~~~~~~~~~~~G~icl 83 (168)
.++|||+.| +|.+|.
T Consensus 49 KPiYhP~~D----------cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD----------CGDHVV 63 (165)
T ss_pred CCccCCccC----------CCCEEE
Confidence 368999997 788775
No 50
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=22.27 E-value=1.4e+02 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=20.6
Q ss_pred ccccC---CcCCCCCccceeeccceEEeccCCCcccc-ccchhchHHhHH
Q psy6012 59 NKMYH---PNIDGGTLNRIFYISGTVCLDVINQAWTA-LYDLSNIFECFL 104 (168)
Q Consensus 59 t~i~H---pnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~~i~~il~~i~ 104 (168)
|++|| +||.. +|+||+.... .| ..++.+ +....
T Consensus 131 T~L~~aPffNV~~---------~G~VC~G~~~---~P~~~~~~~-i~~we 167 (228)
T TIGR03737 131 TKLYQAPLFNVWS---------NGEICAGNAR---LPDRPTVAN-ISAWE 167 (228)
T ss_pred CeeccCCcCccCC---------CCeEeeCCCc---CCCCcCHHH-HHHHH
Confidence 44555 48987 9999998653 34 234444 55553
No 51
>KOG4445|consensus
Probab=20.09 E-value=1.2e+02 Score=26.36 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeeEecc
Q psy6012 36 GVWKVRVHLPEHYSSKSPSIGFKNK 60 (168)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~F~t~ 60 (168)
-.+.+.++.++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999999865
Done!