Query psy6012
Match_columns 168
No_of_seqs 135 out of 1299
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 00:20:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k9o_A Ubiquitin-conjugating e 100.0 1.2E-44 4.1E-49 288.9 13.0 153 1-164 2-179 (201)
2 2aak_A UBC1, ubiquitin conjuga 100.0 6.7E-43 2.3E-47 267.7 14.8 134 1-146 1-151 (152)
3 1ayz_A UBC2, ubiquitin-conjuga 100.0 5.1E-43 1.7E-47 273.1 14.1 137 1-149 1-154 (169)
4 4gpr_A Ubiquitin-conjugating e 100.0 1E-42 3.4E-47 266.6 14.3 132 4-145 2-150 (151)
5 2pwq_A Ubiquitin conjugating e 100.0 3.4E-43 1.2E-47 283.6 12.2 150 4-162 21-191 (216)
6 2c2v_B Ubiquitin-conjugating e 100.0 4E-43 1.4E-47 269.7 11.6 135 1-147 2-153 (154)
7 2ucz_A UBC7, ubiquitin conjuga 100.0 1.1E-42 3.7E-47 269.8 13.6 133 1-145 1-164 (165)
8 3e46_A Ubiquitin-conjugating e 100.0 6.6E-43 2.2E-47 287.7 13.1 150 5-163 56-230 (253)
9 2bep_A Ubiquitin-conjugating e 100.0 2.7E-42 9.4E-47 266.2 14.7 132 5-145 7-158 (159)
10 1zdn_A Ubiquitin-conjugating e 100.0 1.9E-42 6.5E-47 266.9 12.3 130 5-144 12-158 (158)
11 2ayv_A Ubiquitin-conjugating e 100.0 6.3E-42 2.2E-46 266.2 14.1 130 5-144 20-166 (166)
12 1z2u_A Ubiquitin-conjugating e 100.0 8.7E-42 3E-46 261.0 14.3 131 5-145 3-150 (150)
13 2r0j_A Ubiquitin carrier prote 100.0 6E-42 2E-46 261.7 13.4 130 7-146 2-148 (149)
14 2z5d_A Ubiquitin-conjugating e 100.0 2.3E-42 7.9E-47 271.7 11.3 137 1-146 20-170 (179)
15 3h8k_A Ubiquitin-conjugating e 100.0 7.5E-42 2.6E-46 264.7 13.9 131 5-145 2-163 (164)
16 2c4o_A Ubiquitin-conjugating e 100.0 1.1E-41 3.7E-46 264.6 14.6 131 5-145 18-165 (165)
17 1jat_A Ubiquitin-conjugating e 100.0 3.5E-42 1.2E-46 264.6 11.2 132 5-146 4-152 (155)
18 2onu_A Ubiquitin-conjugating e 100.0 2.3E-42 7.9E-47 265.1 9.6 134 6-147 2-149 (152)
19 1tte_A Ubiquitin-conjugating e 100.0 1.7E-42 5.9E-47 279.3 9.1 148 6-162 2-183 (215)
20 2e2c_A Ubiquitin conjugating e 100.0 8.5E-42 2.9E-46 262.7 12.5 130 5-145 8-154 (156)
21 2gjd_A Ubiquitin-conjugating e 100.0 1.8E-41 6.2E-46 261.2 14.3 133 1-145 1-157 (157)
22 1yh2_A HSPC150 protein similar 100.0 2.4E-41 8.2E-46 263.4 14.6 134 5-148 3-157 (169)
23 1fxt_A Ubiquitin-conjugating e 100.0 7.1E-42 2.4E-46 261.2 11.0 130 7-145 2-149 (149)
24 2grr_A Ubiquitin-conjugating e 100.0 3.4E-41 1.2E-45 260.6 14.7 134 1-146 4-161 (161)
25 1i7k_A Ubiquitin-conjugating e 100.0 2.7E-41 9.2E-46 265.6 13.2 132 5-147 29-177 (179)
26 3rcz_B SUMO-conjugating enzyme 100.0 7.6E-41 2.6E-45 259.4 14.6 131 5-145 9-163 (163)
27 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-40 3.8E-45 265.1 14.2 131 5-145 47-194 (194)
28 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.2E-40 4E-45 264.7 14.0 131 6-145 32-192 (193)
29 1yf9_A Ubiquitin carrier prote 100.0 5.4E-41 1.8E-45 262.1 11.1 133 6-146 12-157 (171)
30 1yrv_A Ubiquitin-conjugating l 100.0 7.2E-41 2.5E-45 260.9 10.7 129 1-142 20-168 (169)
31 1wzv_A Ubiquitin-conjugating e 100.0 2.1E-40 7.1E-45 254.6 11.9 132 5-146 3-152 (155)
32 3rz3_A Ubiquitin-conjugating e 100.0 2.6E-40 8.8E-45 260.6 12.6 134 1-145 3-173 (183)
33 3fn1_B NEDD8-conjugating enzym 100.0 3.9E-40 1.3E-44 255.9 13.2 132 4-145 12-167 (167)
34 1c4z_D UBCH7, ubiquitin conjug 100.0 3.2E-40 1.1E-44 253.3 10.3 131 7-147 3-151 (154)
35 2y9m_A Ubiquitin-conjugating e 100.0 1.2E-39 4E-44 254.6 13.0 134 1-145 3-168 (172)
36 2awf_A Ubiquitin-conjugating e 100.0 5.7E-40 1.9E-44 256.4 10.7 126 4-139 15-172 (172)
37 1y8x_A Ubiquitin-conjugating e 100.0 1.8E-39 6.1E-44 250.9 12.8 130 5-145 5-150 (160)
38 2nvu_C NEDD8-conjugating enzym 100.0 3.9E-39 1.3E-43 253.4 13.0 132 3-145 23-170 (180)
39 3o2u_A NEDD8-conjugating enzym 100.0 8.5E-39 2.9E-43 253.4 12.9 132 4-145 27-179 (190)
40 4ddg_A Ubiquitin-conjugating e 100.0 8.3E-38 2.8E-42 271.7 14.7 135 5-149 2-153 (399)
41 4ds2_A Ubiquitin-conjugating e 100.0 5.9E-38 2E-42 243.7 10.1 126 1-137 5-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 1.8E-34 6E-39 244.2 9.8 132 5-146 75-244 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 4.4E-35 1.5E-39 225.7 5.1 113 5-128 20-156 (156)
44 1jat_B Ubiquitin-conjugating e 100.0 3.8E-35 1.3E-39 221.5 2.3 114 1-125 2-138 (138)
45 2fo3_A Ubiquitin-conjugating e 100.0 3E-33 1E-37 207.9 10.1 100 5-114 5-122 (125)
46 2a4d_A Ubiquitin-conjugating e 100.0 1.2E-33 4.3E-38 218.4 8.3 109 5-122 24-156 (160)
47 2h2y_A Ubiquitin-conjugating e 100.0 1.8E-32 6E-37 206.6 10.8 99 5-113 19-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 3.4E-33 1.2E-37 217.8 5.5 109 5-122 34-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 1.4E-31 4.9E-36 201.8 10.0 92 8-109 24-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.9E-29 6.4E-34 199.3 11.4 100 5-116 13-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 2.6E-31 9.1E-36 209.8 0.6 121 5-143 26-180 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.9E-23 6.5E-28 161.3 4.0 85 8-101 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.7 7.7E-18 2.6E-22 130.0 7.4 97 8-115 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 4E-16 1.4E-20 118.3 4.0 76 8-95 36-133 (168)
55 3obq_A Tumor susceptibility ge 99.3 1.9E-12 6.5E-17 98.2 5.7 68 30-109 61-137 (146)
56 2cwb_A Chimera of immunoglobul 94.6 0.0041 1.4E-07 44.5 -0.9 54 109-162 19-80 (108)
57 2yz0_A Serine/threonine-protei 91.4 0.45 1.5E-05 34.2 6.0 24 36-59 62-85 (138)
58 2ebm_A RWD domain-containing p 91.3 0.16 5.5E-06 36.1 3.4 25 35-59 54-78 (128)
59 2day_A Ring finger protein 25; 90.2 0.23 7.9E-06 35.3 3.4 24 36-59 59-82 (128)
60 3zqs_A E3 ubiquitin-protein li 89.4 1.5 5.1E-05 33.9 7.6 73 9-108 4-86 (186)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 88.4 0.27 9.3E-06 35.3 2.7 23 36-58 63-85 (137)
62 2ebk_A RWD domain-containing p 87.6 0.3 1E-05 34.8 2.5 23 36-58 56-78 (128)
63 2dax_A Protein C21ORF6; RWD do 86.7 0.49 1.7E-05 34.8 3.2 23 37-59 74-96 (152)
64 2daw_A RWD domain containing p 85.9 0.73 2.5E-05 34.1 3.8 23 37-59 76-98 (154)
65 2bum_A Protocatechuate 3,4-dio 25.1 59 0.002 25.1 3.4 26 33-58 108-138 (209)
No 1
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.2e-44 Score=288.94 Aligned_cols=153 Identities=24% Similarity=0.519 Sum_probs=142.6
Q ss_pred CCCChhhhccHHHHHHHhhhC------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK 60 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~ 60 (168)
|| +.|.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 77 67899999999999652 59999999 9999999999999999999999999999999
Q ss_pred ccCCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 61 MYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 61 i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
||||||+. .+|.||+++|.++|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus 80 i~HPnv~~--------~~G~iCl~iL~~~W~p~~~i~~vL~~i-~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~ 150 (201)
T 3k9o_A 80 IWHPNISS--------VTGAICLDILKDQWAAAMTLRTVLLSL-QALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA 150 (201)
T ss_dssp CCBTTBCT--------TTCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccCCCcC--------CCCeeeCcccccCCCCCCCHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999995 499999999999999999999999999 799999999999999999999999999999999999
Q ss_pred hCccCCCCC-----ccCCcccccCccccc
Q psy6012 141 LAPESNPGL-----PRARRVTTMPWEQTY 164 (168)
Q Consensus 141 ~~~~~~~~~-----~~~~~~~~~~~~~~~ 164 (168)
++|+..+.. +++..+..|+|++.-
T Consensus 151 ~~~a~~~~~~~~~eekV~~l~~MGf~~~~ 179 (201)
T 3k9o_A 151 HVYAGAPVSSPEYTKKIENLCAMGFDRNA 179 (201)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHTTTCCHHH
T ss_pred HHhcccccccchhHHHHHHHHHcCCCHHH
Confidence 999999864 688999999999863
No 2
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=6.7e-43 Score=267.69 Aligned_cols=134 Identities=31% Similarity=0.665 Sum_probs=128.0
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|| +++.+||++|+++|.++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (152)
T 2aak_A 1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78 (152)
T ss_dssp CC--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence 77 67899999999999763 59999999 8999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
|||+. +|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||++++++
T Consensus 79 Pnv~~---------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~ 148 (152)
T 2aak_A 79 PNIYA---------DGSICLDILQNQWSPIYDVAAILTSI-QSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148 (152)
T ss_dssp TTBCT---------TSBBCCGGGTTSCCTTCCHHHHHHHH-HHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCEEechhhcCCCCCCCcHHHHHHHH-HHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99998 99999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred cCC
Q psy6012 144 ESN 146 (168)
Q Consensus 144 ~~~ 146 (168)
+..
T Consensus 149 a~~ 151 (152)
T 2aak_A 149 WTA 151 (152)
T ss_dssp CC-
T ss_pred ccc
Confidence 864
No 3
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-43 Score=273.07 Aligned_cols=137 Identities=28% Similarity=0.591 Sum_probs=129.3
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|| +++.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 78 (169)
T 1ayz_A 1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH 78 (169)
T ss_dssp -C--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence 77 67899999999999764 69999999 8999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
|||+. +|.||+++|.+.|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|++++
T Consensus 79 PNI~~---------~G~ICl~iL~~~WsP~~~i~~vL~si-~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~ 148 (169)
T 1ayz_A 79 PNVYA---------NGEICLDILQNRWTPTYDVASILTSI-QSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS 148 (169)
T ss_dssp TTBCT---------TSBBCCGGGTTTCCTTCCHHHHHHHH-HHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCeEeehhhccCCCCcCcHHHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99998 99999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy6012 144 ESNPGL 149 (168)
Q Consensus 144 ~~~~~~ 149 (168)
+.....
T Consensus 149 a~~~~~ 154 (169)
T 1ayz_A 149 WEDDMD 154 (169)
T ss_dssp HHHHTC
T ss_pred cCCCcc
Confidence 875543
No 4
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1e-42 Score=266.59 Aligned_cols=132 Identities=29% Similarity=0.586 Sum_probs=127.0
Q ss_pred ChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 4 PSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
.+.|.+||++|+++|.++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 467899999999999863 69999999 9999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
+. +|.||+++|.++|+|++++++||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 82 ~~---------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 82 NK---------NGVICLDILKDQWSPALTLSRVLLSI-SSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp CT---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CC---------CCEEEcccccCCCCCCCcHHHHHHHH-HHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 98 99999999999999999999999999 79999999999999999999999999999999999999975
No 5
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.4e-43 Score=283.63 Aligned_cols=150 Identities=24% Similarity=0.468 Sum_probs=128.9
Q ss_pred ChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 4 PSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
.+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 367899999999999863 69999999 8999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
+. .+|.||+++|.+.|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 101 ~~--------~~G~ICL~iL~~~WsP~~ti~~VL~sI-~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 101 SS--------QTGAICLDVLKNEWSPALTIRTALLSI-QALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp CT--------TTCBBCCHHHHHHCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred cC--------CCCEEEchhhcccCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 95 489999999999999999999999999 799999999999999999999999999999999999999998
Q ss_pred CC----CccCCcccccCccc
Q psy6012 147 PG----LPRARRVTTMPWEQ 162 (168)
Q Consensus 147 ~~----~~~~~~~~~~~~~~ 162 (168)
+. .++++.+..|+|++
T Consensus 172 ~~~~~~~~~v~~~~~mgf~~ 191 (216)
T 2pwq_A 172 PKEEPREVIIKKITEMGFSE 191 (216)
T ss_dssp C-------------------
T ss_pred CcccchhhHHHHHHHcCCCH
Confidence 75 36889999999985
No 6
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4e-43 Score=269.67 Aligned_cols=135 Identities=28% Similarity=0.530 Sum_probs=126.3
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|| ..+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 2 ~s--~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (154)
T 2c2v_B 2 GS--AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYH 79 (154)
T ss_dssp CS--CSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCccc
Confidence 55 46889999999999763 69999999 8999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
|||+. +|.||+++|+++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|++++
T Consensus 80 Pnv~~---------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~ 149 (154)
T 2c2v_B 80 PNVDK---------LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149 (154)
T ss_dssp TTBCT---------TCBBCCHHHHTSCCTTCCHHHHHHHH-HHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcc---------CCeEEchhccCCCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99998 99999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred cCCC
Q psy6012 144 ESNP 147 (168)
Q Consensus 144 ~~~~ 147 (168)
+..+
T Consensus 150 a~~~ 153 (154)
T 2c2v_B 150 AMNN 153 (154)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8754
No 7
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-42 Score=269.80 Aligned_cols=133 Identities=23% Similarity=0.502 Sum_probs=126.3
Q ss_pred CCCChhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
|| +.|.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 78 (165)
T 2ucz_A 1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL 78 (165)
T ss_dssp -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCc
Confidence 77 78999999999999753 59999999 899999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccC-------------CCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCH
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVI-------------NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKP 129 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~ 129 (168)
||||+. +|.||+++| .++|+|+++|++||++| ++||.+|++++|+|.+||++|++|+
T Consensus 79 HPNv~~---------~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si-~~ll~~Pn~~~p~n~~aa~~~~~~~ 148 (165)
T 2ucz_A 79 HPNIYP---------NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV-MSMLSEPNIESGANIDACILWRDNR 148 (165)
T ss_dssp CTTBCT---------TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHH-HHHHHSCCGGGCCCHHHHHHHHTTH
T ss_pred cCCCCC---------CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHH-HHHHhCCCCCCchhHHHHHHHHHCH
Confidence 999998 999999999 68899999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHHHhCccC
Q psy6012 130 DEYKKKCLPTMLAPES 145 (168)
Q Consensus 130 ~~f~~~~r~~~~~~~~ 145 (168)
++|.++||++++++++
T Consensus 149 ~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 149 PEFERQVKLSILKSLG 164 (165)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
No 8
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=6.6e-43 Score=287.72 Aligned_cols=150 Identities=23% Similarity=0.511 Sum_probs=141.8
Q ss_pred hhhhccHHHHHHHhhhC------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCC
Q psy6012 5 SAGKRRMDTDVIKLIES------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHP 64 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~Hp 64 (168)
+.|.+||++|+++|+.+ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 135 (253)
T 3e46_A 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 135 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccC
Confidence 67899999999999642 59999999 99999999999999999999999999999999999
Q ss_pred cCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 65 NIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 65 nI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
||+. .+|.||+++|.++|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|+++|+
T Consensus 136 NV~~--------~~G~ICL~iL~~~WsP~~ti~~vL~sI-~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA 206 (253)
T 3e46_A 136 NISS--------VTGAICLDILKDQWAAAMTLRTVLLSL-QALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 206 (253)
T ss_dssp TBCT--------TTCBBCCGGGTTCCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CccC--------CCCeeecccccCCCCCCCCHHHHHHHH-HHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9995 499999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred CCCCC-----ccCCcccccCcccc
Q psy6012 145 SNPGL-----PRARRVTTMPWEQT 163 (168)
Q Consensus 145 ~~~~~-----~~~~~~~~~~~~~~ 163 (168)
..+.. ++++.+.+|+|++.
T Consensus 207 ~~~~~~~~~~~~v~~l~~mgf~~~ 230 (253)
T 3e46_A 207 GAPVSSPEYTKKIENLCAAGFDRN 230 (253)
T ss_dssp CCSCCCHHHHHHHHHHHHTTCCHH
T ss_pred ccccCcchHHHHHHHHHHcCCCHH
Confidence 99864 67899999999875
No 9
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=2.7e-42 Score=266.18 Aligned_cols=132 Identities=25% Similarity=0.550 Sum_probs=126.1
Q ss_pred hhhhccHHHHHHHhhhC------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCC
Q psy6012 5 SAGKRRMDTDVIKLIES------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHP 64 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~Hp 64 (168)
+.+.+||++|+++|.++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 86 (159)
T 2bep_A 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCcc
Confidence 67899999999999751 59999999 99999999999999999999999999999999999
Q ss_pred cCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 65 NIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 65 nI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
||+. .+|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus 87 ni~~--------~~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 157 (159)
T 2bep_A 87 NISS--------VTGAICLDILKDQWAAAMTLRTVLLSL-QALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157 (159)
T ss_dssp TBCT--------TTCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CCCC--------CCCEEeChhhhccCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9995 499999999999999999999999999 7999999999999999999999999999999999999998
Q ss_pred C
Q psy6012 145 S 145 (168)
Q Consensus 145 ~ 145 (168)
.
T Consensus 158 ~ 158 (159)
T 2bep_A 158 G 158 (159)
T ss_dssp C
T ss_pred c
Confidence 6
No 10
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-42 Score=266.93 Aligned_cols=130 Identities=26% Similarity=0.491 Sum_probs=125.0
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
..+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 91 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence 67889999999999763 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
. +|.||+++|.+.|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|++++|
T Consensus 92 ~---------~G~iCl~iL~~~W~p~~~i~~vL~~i-~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 92 A---------NGEICVNVLKRDWTAELGIRHVLLTI-KCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp T---------TSBBCHHHHTTTCCTTCCHHHHHHHH-HHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred C---------CCEEehhhcCCCCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 8 89999999999999999999999999 7999999999999999999999999999999999999875
No 11
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-42 Score=266.18 Aligned_cols=130 Identities=30% Similarity=0.626 Sum_probs=124.8
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 46889999999999763 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE 144 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~ 144 (168)
. +|.||+++|.++|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|++++|
T Consensus 100 ~---------~G~ICL~iL~~~WsP~~ti~~vL~sI-~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 S---------QGAICLDILKDQWSPALTISKVLLSI-SSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred C---------CCeEEcccccccCCCCCcHHHHHHHH-HHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999 7999999999999999999999999999999999999875
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8.7e-42 Score=261.00 Aligned_cols=131 Identities=28% Similarity=0.597 Sum_probs=125.4
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
..+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 45789999999999764 59999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
. +|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+++++++.
T Consensus 83 ~---------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 83 S---------NGSICLDILRSQWSPALTISKVLLSI-CSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred C---------CCeEeeccccCCCCCCCCHHHHHHHH-HHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999 79999999999999999999999999999999999999874
No 13
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=6e-42 Score=261.75 Aligned_cols=130 Identities=28% Similarity=0.573 Sum_probs=124.6
Q ss_pred hhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCC
Q psy6012 7 GKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGG 69 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~ 69 (168)
+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-
Confidence 368999999999764 59999999 999999999999999999999999999999999999998
Q ss_pred CccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 70 TLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 70 ~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
+|.||+++|.+.|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 81 --------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 --------LGRICLDILKDKWSPALQIRTVLLSI-QALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp --------TCBBCCGGGTTTCCTTSCHHHHHHHH-HHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred --------CCEEechhcCCCCCCCCcHHHHHHHH-HHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999 799999999999999999999999999999999999999864
No 14
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=271.66 Aligned_cols=137 Identities=71% Similarity=1.155 Sum_probs=128.1
Q ss_pred CCCChhhhccHHHHHHHhhhC-----------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES-----------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~-----------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
||+++++.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 20 ms~~~~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred CCCchHHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 777778999999999999753 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHh-HHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFEC-FLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
. .+|.||+++|.++|+|++++.+||++ | ++||.+|++++|+|.+||++|++|+++|.++||+++++++..
T Consensus 100 ~--------~~G~ICL~iL~~~WsP~~ti~~iL~s~I-~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 100 E--------ASGTVCLDVINQTWTALYDLTNIFESFL-PQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp T--------TTCBBCHHHHHHHCCTTCCTTHHHHTHH-HHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred C--------CCCeEeccccccCCCCCCCHHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 7 59999999999999999999999999 6 899999999999999999999999999999999999999874
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=7.5e-42 Score=264.69 Aligned_cols=131 Identities=22% Similarity=0.442 Sum_probs=125.4
Q ss_pred hhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 5 SAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
+.|.+||++|+++|.++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 57899999999999763 59999999 9999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCC-------------CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHH
Q psy6012 67 DGGTLNRIFYISGTVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYK 133 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~ 133 (168)
+. +|.||+++|. +.|+|+++|++||++| ++||.+|++++|+|.+||++|++|+++|.
T Consensus 82 ~~---------~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i-~~ll~~pn~~~p~n~~aa~~~~~~~~~f~ 151 (164)
T 3h8k_A 82 YP---------DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV-VSMLAEPNDESGANVDASKMWRDDREQFY 151 (164)
T ss_dssp CT---------TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHH-HHHHHSCCCSSCSSHHHHHHHHHCHHHHH
T ss_pred CC---------CCcEeeecccCcccccccccccccCCCCCCcHHHHHHHH-HHHHcCCCCCCccCHHHHHHHHHCHHHHH
Confidence 98 9999999997 7899999999999999 79999999999999999999999999999
Q ss_pred HHHHHHHhCccC
Q psy6012 134 KKCLPTMLAPES 145 (168)
Q Consensus 134 ~~~r~~~~~~~~ 145 (168)
++||++++++++
T Consensus 152 ~~~~~~~~~s~~ 163 (164)
T 3h8k_A 152 KIAKQIVQKSLG 163 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999999865
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.1e-41 Score=264.61 Aligned_cols=131 Identities=29% Similarity=0.614 Sum_probs=125.7
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 56889999999999753 69999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
. +|.||+++|+++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 98 ~---------~G~ICl~iL~~~W~P~~ti~~vL~si-~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 98 S---------NGSICLDILRSQWSPALTISKVLLSI-CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred C---------CCeEeehhhcCCCCCcCcHHHHHHHH-HHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999 79999999999999999999999999999999999999874
No 17
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.5e-42 Score=264.62 Aligned_cols=132 Identities=30% Similarity=0.559 Sum_probs=126.6
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 56889999999999764 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
. +|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 84 ~---------~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 84 R---------LGRICLDVLKTNWSPALQIRTVLLSI-QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp T---------TCCBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred C---------CCEEEchhhccCCCCCCCHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 8 99999999999999999999999999 799999999999999999999999999999999999999864
No 18
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.3e-42 Score=265.09 Aligned_cols=134 Identities=51% Similarity=0.875 Sum_probs=126.0
Q ss_pred hhhccHHHHHHHhhhC------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCc
Q psy6012 6 AGKRRMDTDVIKLIES------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTL 71 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~~------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~ 71 (168)
+|.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~--- 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE--- 78 (152)
T ss_dssp -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT---
T ss_pred hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC---
Confidence 4789999999999753 69999999 999999999999999999999999999999999999995
Q ss_pred cceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCC
Q psy6012 72 NRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 72 ~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~ 147 (168)
.+|.||+++|.+.|+|++++.+||.+++++||.+|++++|+|.+||++|++|+++|.++||+++++++...
T Consensus 79 -----~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~ 149 (152)
T 2onu_A 79 -----ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD 149 (152)
T ss_dssp -----TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred -----cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence 48999999999999999999999999668999999999999999999999999999999999999998753
No 19
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.7e-42 Score=279.32 Aligned_cols=148 Identities=26% Similarity=0.525 Sum_probs=135.9
Q ss_pred hhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 6 AGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
.+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4789999999999752 69999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~ 147 (168)
. .+|.||+++|++.|+|++|+.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++..+
T Consensus 82 ~--------~~G~ICL~iL~~~WsP~~ti~~VL~sI-~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~ 152 (215)
T 1tte_A 82 S--------VTGAICLDILRNAWSPVITLKSALISL-QALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASET 152 (215)
T ss_dssp S--------SSSCCCSSTTTCCSCTTCCHHHHHHHH-HHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCC
T ss_pred C--------CCCEEECccCCCCCCCcCcHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Confidence 7 699999999999999999999999999 7999999999999999999999999999999999999999876
Q ss_pred CC----------------ccCCcccccCccc
Q psy6012 148 GL----------------PRARRVTTMPWEQ 162 (168)
Q Consensus 148 ~~----------------~~~~~~~~~~~~~ 162 (168)
.. +++..+..|+|++
T Consensus 153 ~~~~~~~~~~~~~~g~~~~~v~~~~~mg~~~ 183 (215)
T 1tte_A 153 SNGQKGNVEESDLYGIDHDLIDEFESQGFEK 183 (215)
T ss_dssp SCCSSCCCSCSSCCCCSHHHHHHHHHHTCCH
T ss_pred CcccccchhhhhhccccHHHHHHHHHcCCCH
Confidence 42 2455567777765
No 20
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=8.5e-42 Score=262.69 Aligned_cols=130 Identities=33% Similarity=0.608 Sum_probs=124.3
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|.++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 56889999999999752 69999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
. +|.||+++|.+.|+|++++.+||++| ++||.+|++++|+|.+||++| +|+++|.++||++++++++
T Consensus 88 ~---------~G~iCl~iL~~~W~p~~~i~~vL~si-~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 88 Q---------SGNICLDILKENWTASYDVRTILLSL-QSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred c---------CceEECccccccCCCCCcHHHHHHHH-HHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 8 99999999999999999999999999 799999999999999999999 8999999999999999865
No 21
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.8e-41 Score=261.18 Aligned_cols=133 Identities=33% Similarity=0.547 Sum_probs=124.9
Q ss_pred CCCChhhhccHHHHHHHhhhC--------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEe
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES--------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~--------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~ 58 (168)
|| +.+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.
T Consensus 1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (157)
T 2gjd_A 1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP 78 (157)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence 77 67899999999999742 49999999 99999999999999999999999999999
Q ss_pred ccccCCcCCCCCccceeeccceEEeccCCC--ccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHH
Q psy6012 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQ--AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136 (168)
Q Consensus 59 t~i~HpnI~~~~~~~~~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~ 136 (168)
|+||||||+. +|.||+++|.+ +|+|+++|.+||.+| ++||.+|+.++|+|.+||++|++|+++|.++|
T Consensus 79 t~i~HPnv~~---------~G~iCl~iL~~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~ 148 (157)
T 2gjd_A 79 AGFYHPNVYP---------SGTICLSILNEDQDWRPAITLKQIVLGV-QDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148 (157)
T ss_dssp TTCCCTTBCT---------TSBBCCGGGCTTTTCCTTCCHHHHHHHH-HHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHH
T ss_pred CCCccCCCCC---------CCcEeeecccCCCCCCCCCcHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHH
Confidence 9999999998 99999999987 799999999999999 79999999999999999999999999999999
Q ss_pred HHHHhCccC
Q psy6012 137 LPTMLAPES 145 (168)
Q Consensus 137 r~~~~~~~~ 145 (168)
|+++++++.
T Consensus 149 ~~~~~~~a~ 157 (157)
T 2gjd_A 149 LLQAKQYSK 157 (157)
T ss_dssp HHHHHHTBC
T ss_pred HHHHHHhcC
Confidence 999999874
No 22
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-41 Score=263.42 Aligned_cols=134 Identities=28% Similarity=0.534 Sum_probs=127.6
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 82 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC
Confidence 57889999999999763 69999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCC----CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCc
Q psy6012 68 GGTLNRIFYISGTVCLDVIN----QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAP 143 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~ 143 (168)
. +|.||+++|+ ++|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++||+|++++
T Consensus 83 ~---------~G~iCl~iL~~~~~~~W~p~~~i~~vL~si-~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~ 152 (169)
T 1yh2_A 83 S---------AGRICLDVLKLPPKGAWRPSLNIATVLTSI-QLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152 (169)
T ss_dssp T---------TCBBCCGGGSCTTTSCCCTTSCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred c---------CCeEecccccCCcccCCCCCCcHHHHHHHH-HHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8 9999999998 8999999999999999 799999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy6012 144 ESNPG 148 (168)
Q Consensus 144 ~~~~~ 148 (168)
+....
T Consensus 153 a~~~~ 157 (169)
T 1yh2_A 153 ARQKQ 157 (169)
T ss_dssp SCCC-
T ss_pred ccccc
Confidence 98643
No 23
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=7.1e-42 Score=261.23 Aligned_cols=130 Identities=28% Similarity=0.590 Sum_probs=124.0
Q ss_pred hhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCC
Q psy6012 7 GKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDG 68 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~ 68 (168)
+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 478999999999753 59999999 999999999999999999999999999999999999997
Q ss_pred CCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 69 GTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 69 ~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
.+|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 82 --------~~G~iCl~iL~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 --------VTGAICLDILKNAWSPVITLKSALISL-QALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp --------SSCCBCCHHHHTSCCTTCCHHHHHHHH-HHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred --------CCCeEeCCcCCCCCCCCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999 79999999999999999999999999999999999999874
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.4e-41 Score=260.60 Aligned_cols=134 Identities=26% Similarity=0.497 Sum_probs=126.4
Q ss_pred CCCChhhhccHHHHHHHhhhC--------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEe
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES--------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFK 58 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~--------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~ 58 (168)
|| +.+.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.
T Consensus 4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 55 67899999999999752 49999999 89999999999999999999999999999
Q ss_pred ccccCCcCCCCCccceeeccceEEeccCCC--ccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHH
Q psy6012 59 NKMYHPNIDGGTLNRIFYISGTVCLDVINQ--AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136 (168)
Q Consensus 59 t~i~HpnI~~~~~~~~~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~ 136 (168)
|+||||||+. +|.||+++|.. +|+|++++.+||.+| ++||.+|+.++|+|.+||++|++|+++|.++|
T Consensus 82 t~i~HPnv~~---------~G~iCl~iL~~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~ 151 (161)
T 2grr_A 82 PPLFHPNVYP---------SGTVCLSILEEDKDWRPAITIKQILLGI-QELLNEPNIQSPAQAEAYTIYCQNRVEYEKRV 151 (161)
T ss_dssp SCCCSTTBCT---------TSBBCCGGGCTTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHH
T ss_pred cCcccCCCCC---------CCeEeehhcCCCCCcCCCCcHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHH
Confidence 9999999998 99999999985 899999999999999 79999999999999999999999999999999
Q ss_pred HHHHhCccCC
Q psy6012 137 LPTMLAPESN 146 (168)
Q Consensus 137 r~~~~~~~~~ 146 (168)
|+++++++.+
T Consensus 152 ~~~~~~~a~~ 161 (161)
T 2grr_A 152 RAQAKKFAPS 161 (161)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-41 Score=265.58 Aligned_cols=132 Identities=30% Similarity=0.563 Sum_probs=124.4
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 108 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence 56889999999999763 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~ 147 (168)
. +|.||+++|.+.|+|+++|.+||++| ++||.+|++++|+|.+||++| +|+++|.++|++++++++...
T Consensus 109 ~---------~G~ICL~iL~~~WsP~~ti~~vL~sI-~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 109 T---------QGNISLDILKEKWSALYDVRTILLSI-QSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred c---------CCeEEcccCcCcCCCCCCHHHHHHHH-HHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 8 99999999999999999999999999 799999999999999999999 999999999999999987754
No 26
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-41 Score=259.41 Aligned_cols=131 Identities=27% Similarity=0.529 Sum_probs=124.9
Q ss_pred hhhhccHHHHHHHhhhC--------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 5 SAGKRRMDTDVIKLIES--------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~--------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
.+|.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~ 88 (163)
T 3rcz_B 9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88 (163)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 67999999999999763 49999999 899999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccCCC--ccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVINQ--AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
||||+. +|.||+++|.+ +|+|+++|++||++| ++||.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus 89 HPnV~~---------~G~iCl~iL~~~~~W~p~~ti~~vL~~i-~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~ 158 (163)
T 3rcz_B 89 HPNVYP---------SGTVCLSILNEEEGWKPAITIKQILLGI-QDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQA 158 (163)
T ss_dssp STTBCT---------TSBBCCGGGCTTTTCCTTCCHHHHHHHH-HHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCCCC---------CCcEeccccCCCCCcCCcCcHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence 999998 99999999976 499999999999999 799999999999999999999999999999999999
Q ss_pred hCccC
Q psy6012 141 LAPES 145 (168)
Q Consensus 141 ~~~~~ 145 (168)
++|+.
T Consensus 159 ~~ya~ 163 (163)
T 3rcz_B 159 RENAP 163 (163)
T ss_dssp HHTCC
T ss_pred HHhCc
Confidence 99873
No 27
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-40 Score=265.06 Aligned_cols=131 Identities=27% Similarity=0.552 Sum_probs=125.3
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|..+ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 45789999999999763 69999999 89999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
. +|.||+++|.+.|+|+++|.+||++| +.||.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 127 ~---------~G~ICL~iL~~~WsP~~ti~~vL~sI-~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 127 S---------QGVICLDILKDNWSPALTISKVLLSI-CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp T---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred C---------CCceechhhhccCCCcCcHHHHHHHH-HHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8 99999999999999999999999999 79999999999999999999999999999999999999873
No 28
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-40 Score=264.71 Aligned_cols=131 Identities=21% Similarity=0.471 Sum_probs=124.3
Q ss_pred hhhccHHHHHHHhhh----------------C------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCee
Q psy6012 6 AGKRRMDTDVIKLIE----------------S------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSI 55 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~----------------~------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v 55 (168)
.+.+||++|+++|++ . +|+++|.| +|||+||+|+|+|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 578899999999965 1 49999999 89999999999999999999999999
Q ss_pred eEeccccCCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHH
Q psy6012 56 GFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135 (168)
Q Consensus 56 ~F~t~i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~ 135 (168)
+|.|+||||||+. .+|.||+++|.+.|+|+++|.+||++| ++||.+|++++|+|.+||++|++|+++|.++
T Consensus 112 ~F~T~i~HPNI~~--------~~G~ICL~iL~~~WsP~~ti~~vL~sI-~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ 182 (193)
T 2f4z_A 112 KFVTKIWHPNISS--------QTGAICLDILKHEWSPALTIRTALLSI-QAMLADPVPTDPQDAEVAKMMIENHPLFVQT 182 (193)
T ss_dssp EESSCCCBTTBCT--------TTCBBCCGGGTTTCCTTSCHHHHHHHH-HHHHHSCCTTSCSCHHHHHHHHHCHHHHHHH
T ss_pred EEecCCccCCCcC--------CCCEEECccccccCCCCCCHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHHH
Confidence 9999999999995 499999999999999999999999999 7999999999999999999999999999999
Q ss_pred HHHHHhCccC
Q psy6012 136 CLPTMLAPES 145 (168)
Q Consensus 136 ~r~~~~~~~~ 145 (168)
||+|+++++.
T Consensus 183 ar~~t~~ya~ 192 (193)
T 2f4z_A 183 AKLWTETFAK 192 (193)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 9999999985
No 29
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-41 Score=262.10 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=125.9
Q ss_pred hhhccHHHHHHHhhhC-----------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCcc
Q psy6012 6 AGKRRMDTDVIKLIES-----------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLN 72 (168)
Q Consensus 6 ~a~~Rl~~d~~~l~~~-----------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~~ 72 (168)
.+.+||++|+.+|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~---- 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE---- 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT----
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc----
Confidence 5789999999999864 69999999 899999999999999999999999999999999999994
Q ss_pred ceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 73 RIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 73 ~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
.+|.||+++|.++|+|++++.+||++|+++||.+|+.++|+|.+||++|++|+++|.++||+++++++..
T Consensus 88 ----~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 88 ----RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp ----TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred ----cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 3999999999999999999999999986799999999999999999999999999999999999999874
No 30
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.2e-41 Score=260.94 Aligned_cols=129 Identities=26% Similarity=0.494 Sum_probs=121.1
Q ss_pred CCCChhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
|+ +.+.+||++|+++|.++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 20 M~--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 20 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp GG--CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred cC--hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 55 57899999999999753 69999999 9999999999999999999999999999999999
Q ss_pred CcC-CCCCccceeeccceEEeccCC--CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHH
Q psy6012 64 PNI-DGGTLNRIFYISGTVCLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTM 140 (168)
Q Consensus 64 pnI-~~~~~~~~~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~ 140 (168)
||| +. +|.||+++|+ ++|+|+++|++||++| ++||.+|++++|+|.+||++|++|+++|.++ ++++
T Consensus 98 PNI~~~---------~G~ICL~iL~~~~~WsP~~ti~~vL~sI-~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v 166 (169)
T 1yrv_A 98 PNVDPH---------TGQPCIDFLDNPEKWNTNYTLSSILLAL-QVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLF 166 (169)
T ss_dssp TTBCTT---------TCCBCCHHHHCGGGCCTTCCHHHHHHHH-HHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHH
T ss_pred CcccCC---------CCeEeehhhcCCcCCCCcCCHHHHHHHH-HHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHh
Confidence 999 55 9999999998 8999999999999999 7999999999999999999999999999999 8888
Q ss_pred hC
Q psy6012 141 LA 142 (168)
Q Consensus 141 ~~ 142 (168)
++
T Consensus 167 ~~ 168 (169)
T 1yrv_A 167 NR 168 (169)
T ss_dssp C-
T ss_pred hC
Confidence 75
No 31
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.1e-40 Score=254.60 Aligned_cols=132 Identities=25% Similarity=0.481 Sum_probs=124.6
Q ss_pred hhhhccHHHHHHHhhhC----------------CcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES----------------KHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~----------------~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.+.+||++|+++|.++ +|+++|.. +|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 35789999999999753 69999988 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccC-CCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCC
Q psy6012 68 GGTLNRIFYISGTVCLDVI-NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~ 146 (168)
. +|.||+++| .++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+++++++..
T Consensus 83 ~---------~G~iCl~iL~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 83 E---------NGQICLPIISSENWKPCTKTCQVLEAL-NVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp T---------TCBCCCGGGCTTTCCTTCCHHHHHHHH-HHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred C---------CCeEeecCCCccCCCCCCcHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8 999999999 89999999999999999 799999999999999999999999999999999999999864
No 32
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.6e-40 Score=260.61 Aligned_cols=134 Identities=31% Similarity=0.602 Sum_probs=124.2
Q ss_pred CCCChhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
|++ +.|.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 554 57899999999999864 59999999 999999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccCC-------------CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhh--
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLH-- 127 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~-- 127 (168)
||||+. +|.||+++|. ++|+|+++|++||++| ++||.+||+++|+|.+|+++|++
T Consensus 82 HPnV~~---------~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si-~~ll~~Pn~~~p~n~~aa~~~~~~~ 151 (183)
T 3rz3_A 82 HPNIYE---------TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV-ISLLNEPNTFSPANVDASVMYRKWK 151 (183)
T ss_dssp CTTBCT---------TSBBCCTTC--------------CCCCTTCCHHHHHHHH-HHHHHSCCCSSCSSHHHHHHHHHHH
T ss_pred cCCCCC---------CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHhcc
Confidence 999998 9999999996 7899999999999999 79999999999999999999998
Q ss_pred ----CHHHHHHHHHHHHhCccC
Q psy6012 128 ----KPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 128 ----d~~~f~~~~r~~~~~~~~ 145 (168)
|+++|.++||++++++..
T Consensus 152 ~~~~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 152 ESKGKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 789999999999998754
No 33
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=3.9e-40 Score=255.86 Aligned_cols=132 Identities=23% Similarity=0.441 Sum_probs=123.4
Q ss_pred ChhhhccHHHHHHHhhhC----------------CcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 4 PSAGKRRMDTDVIKLIES----------------KHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
.+.+.+||++|+++|.++ +|+++|.+ +|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 12 ~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 367899999999999863 49999833 9999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCCC------ccccccchhchHHhHHHHHhcC-CCCCCCccHHHHHHHhhCHHHHHHHHHHH
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQ------AWTALYDLSNIFECFLPQLLTY-PNPIDPLNGDAAAMYLHKPDEYKKKCLPT 139 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~------~W~p~~~i~~il~~i~~~ll~~-p~~~~p~n~~aa~~y~~d~~~f~~~~r~~ 139 (168)
+. +|.||+++|.. +|+|+++|.+||++| ++||.+ |++++|+|.+||++|++|+++|.++||+|
T Consensus 92 ~~---------~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i-~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~ 161 (167)
T 3fn1_B 92 TE---------TGEICLSLLREHSIDGTGWAPTRTLKDVVWGL-NSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY 161 (167)
T ss_dssp CT---------TCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHH-HHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CC---------CCEEechhhccCCCCCCCCCCcCcHHHHHHHH-HHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence 98 99999999975 799999999999999 799999 69999999999999999999999999999
Q ss_pred HhCccC
Q psy6012 140 MLAPES 145 (168)
Q Consensus 140 ~~~~~~ 145 (168)
+++||.
T Consensus 162 ~~~~A~ 167 (167)
T 3fn1_B 162 IKRYAR 167 (167)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999874
No 34
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.2e-40 Score=253.32 Aligned_cols=131 Identities=27% Similarity=0.510 Sum_probs=121.3
Q ss_pred hhccHHHHHHHhhhC----------------CcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCC
Q psy6012 7 GKRRMDTDVIKLIES----------------KHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGG 69 (168)
Q Consensus 7 a~~Rl~~d~~~l~~~----------------~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~ 69 (168)
|.+||++|+++|+++ +|+++|.. +|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE- 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC-
Confidence 689999999999753 59999987 999999999999999999999999999999999999998
Q ss_pred CccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCC
Q psy6012 70 TLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 70 ~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~ 147 (168)
+|.||+++|. ++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+++++++...
T Consensus 82 --------~G~iCl~iL~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 82 --------KGQVCLPVISAENWKPATKTDQVIQSL-IALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp --------TCBBCCTTTSSSSCCTTCCHHHHHHHH-HHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred --------CCEEECCCCCCCCCCCCCcHHHHHHHH-HHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 9999999996 8999999999999999 7999999999999999999999999999999999999998743
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.2e-39 Score=254.62 Aligned_cols=134 Identities=22% Similarity=0.417 Sum_probs=124.2
Q ss_pred CCCChhhhccHHHHHHHhhh----------------------C-----CcEEEEec--CCCCCCcEEEEEEEcCCCCCCC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIE----------------------S-----KHEVTILG--AVFYYGGVWKVRVHLPEHYSSK 51 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~----------------------~-----~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~ 51 (168)
|| +.+.+||++|+++|++ + +|+++|.| +|||+||+|+|+|.||++||++
T Consensus 3 Ms--~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~ 80 (172)
T 2y9m_A 3 MA--DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMN 80 (172)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred Cc--HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCC
Confidence 55 7899999999999853 1 49999999 8999999999999999999999
Q ss_pred CCeeeEec-cccCCcCCCCCccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhh-C
Q psy6012 52 SPSIGFKN-KMYHPNIDGGTLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLH-K 128 (168)
Q Consensus 52 pP~v~F~t-~i~HpnI~~~~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~-d 128 (168)
||+|+|.| +||||||+. .+|.||+++|. +.|+|++++.+||.+| ++||.+|++++|+|.+||++|++ |
T Consensus 81 PP~v~f~t~~i~HPni~~--------~~G~iCl~iL~~~~W~p~~~i~~vL~si-~~ll~~p~~~~p~n~~aa~~~~~~d 151 (172)
T 2y9m_A 81 PPKISFMQNNILHCNVKS--------ATGEICLNILKPEEWTPVWDLLHCVHAV-WRLLREPVCDSPLDVDIGNIIRCGD 151 (172)
T ss_dssp CCEEEECTTSCCCTTEET--------TTTEECCGGGSTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSSHHHHHHHTTTC
T ss_pred CCEEEEeeCCeecCCCcC--------CCCEEeccccCCCCCCCcCcHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHhCC
Confidence 99999999 999999963 39999999998 8999999999999999 79999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCccC
Q psy6012 129 PDEYKKKCLPTMLAPES 145 (168)
Q Consensus 129 ~~~f~~~~r~~~~~~~~ 145 (168)
+++|.++||+|++++..
T Consensus 152 ~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 152 MSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 36
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=5.7e-40 Score=256.45 Aligned_cols=126 Identities=28% Similarity=0.594 Sum_probs=92.7
Q ss_pred ChhhhccHHHHHHHhhhC----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCc
Q psy6012 4 PSAGKRRMDTDVIKLIES----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPN 65 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~~----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~Hpn 65 (168)
.+++.+||++|+++|+++ +|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 468999999999999753 59999999 899999999999999999999999999999999999
Q ss_pred CCCCCccceeeccceEEeccCC-------------CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHH-H
Q psy6012 66 IDGGTLNRIFYISGTVCLDVIN-------------QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPD-E 131 (168)
Q Consensus 66 I~~~~~~~~~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~-~ 131 (168)
|+. +|.||+++|. +.|+|+++|++||++| ++||.+|++++|+|.+||++|++|++ +
T Consensus 95 V~~---------~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI-~sll~~Pn~~~p~n~~aa~~~~~d~~~~ 164 (172)
T 2awf_A 95 VDK---------NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV-ISMLADPNGDSPANVDAAKEWREDRNGE 164 (172)
T ss_dssp BCT---------TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHH-HHHHSCC---------------------
T ss_pred CCC---------CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHH-HHHHHCcCCCCccCHHHHHHHHHCcHHH
Confidence 998 9999999996 6899999999999999 79999999999999999999999999 9
Q ss_pred HHHHHHHH
Q psy6012 132 YKKKCLPT 139 (168)
Q Consensus 132 f~~~~r~~ 139 (168)
|.++||++
T Consensus 165 f~~~vr~~ 172 (172)
T 2awf_A 165 FKRKVARC 172 (172)
T ss_dssp --------
T ss_pred HHHHHHhC
Confidence 99999975
No 37
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-39 Score=250.92 Aligned_cols=130 Identities=26% Similarity=0.493 Sum_probs=122.6
Q ss_pred hhhhccHHHHHHHhhh--------------CCcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCC
Q psy6012 5 SAGKRRMDTDVIKLIE--------------SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDG 68 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~--------------~~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~ 68 (168)
+++.+||++|+++|.. .+|+++| | +|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (160)
T 1y8x_A 5 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83 (160)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC
Confidence 5789999999999843 1599998 7 999999999999999999999999999999999999998
Q ss_pred CCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 69 GTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 69 ~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
+|.||+++|.+.|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||++++.+..
T Consensus 84 ---------~G~iCl~iL~~~W~p~~~i~~vL~~i-~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~ 150 (160)
T 1y8x_A 84 ---------EGNVCLNILREDWKPVLTINSIIYGL-QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 150 (160)
T ss_dssp ---------TCBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEE
T ss_pred ---------CCeEEcccchhhccCCCCHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999 79999999999999999999999999999999999997653
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-39 Score=253.43 Aligned_cols=132 Identities=25% Similarity=0.459 Sum_probs=123.8
Q ss_pred CChhhhccHHHHHHHhhh--------------CCcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcC
Q psy6012 3 SPSAGKRRMDTDVIKLIE--------------SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNI 66 (168)
Q Consensus 3 ~~~~a~~Rl~~d~~~l~~--------------~~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI 66 (168)
..+++.+||++|+++|.. .+|+++| | +|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 23 ~~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV 101 (180)
T 2nvu_C 23 KASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 101 (180)
T ss_dssp SCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred CccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCC
Confidence 347789999999999842 1599998 7 8999999999999999999999999999999999999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPES 145 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~ 145 (168)
+. +|.||+++|.+.|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||++++.+..
T Consensus 102 ~~---------~G~iCl~iL~~~W~p~~~i~~vL~si-~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~~ 170 (180)
T 2nvu_C 102 DL---------EGNVALNILREDWKPVLTINSIIYGL-QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 170 (180)
T ss_dssp CT---------TSBBCCGGGTTSCCTTCCHHHHHHHH-HHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEEE
T ss_pred CC---------CCcEEcccccccCCCCCCHHHHHHHH-HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCCc
Confidence 98 99999999999999999999999999 79999999999999999999999999999999999998653
No 39
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=8.5e-39 Score=253.40 Aligned_cols=132 Identities=32% Similarity=0.492 Sum_probs=124.3
Q ss_pred ChhhhccHHHHHHHhhh-----------------C---CcEEEEec-CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q psy6012 4 PSAGKRRMDTDVIKLIE-----------------S---KHEVTILG-AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY 62 (168)
Q Consensus 4 ~~~a~~Rl~~d~~~l~~-----------------~---~W~~~i~G-~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~ 62 (168)
.++|.+||++|+++|.. . +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 27 ~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 36789999999999742 2 79999999 999999999999999999999999999999999
Q ss_pred CCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhC
Q psy6012 63 HPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLA 142 (168)
Q Consensus 63 HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~ 142 (168)
||||+. +|.||+++|.++|+|++++++||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 107 HPnV~~---------~G~iCl~iL~~~W~p~~~i~~vL~~i-~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~ 176 (190)
T 3o2u_A 107 HPNIDL---------KGNVCLNILREDWSPALDLQSIITGL-LFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSG 176 (190)
T ss_dssp CTTBCT---------TSBBCCGGGTTTCCTTCCHHHHHHHH-HHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBT
T ss_pred cCCCCC---------CCeEechhccCCCCCCCCHHHHHHHH-HHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 999998 99999999999999999999999999 79999999999999999999999999999999999986
Q ss_pred ccC
Q psy6012 143 PES 145 (168)
Q Consensus 143 ~~~ 145 (168)
+..
T Consensus 177 ~~~ 179 (190)
T 3o2u_A 177 GSI 179 (190)
T ss_dssp CEE
T ss_pred cCC
Confidence 643
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=8.3e-38 Score=271.65 Aligned_cols=135 Identities=27% Similarity=0.560 Sum_probs=129.3
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+.|.+||++|+++|.++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 56899999999999864 69999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCccCCC
Q psy6012 68 GGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNP 147 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~~~~ 147 (168)
. +|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++++..+
T Consensus 82 ~---------~G~iCl~il~~~W~p~~~i~~vL~~i-~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~ 151 (399)
T 4ddg_A 82 S---------NGSISLDILRSQWSPALTISKVLLSI-CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGG 151 (399)
T ss_dssp T---------TCBBCCGGGTTSCCTTCCHHHHHHHH-HHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCT
T ss_pred C---------CCeEeCcccccCCCccccHHHHHHHH-HHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccc
Confidence 8 99999999999999999999999999 7999999999999999999999999999999999999999876
Q ss_pred CC
Q psy6012 148 GL 149 (168)
Q Consensus 148 ~~ 149 (168)
..
T Consensus 152 v~ 153 (399)
T 4ddg_A 152 SA 153 (399)
T ss_dssp TH
T ss_pred cc
Confidence 43
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=5.9e-38 Score=243.75 Aligned_cols=126 Identities=20% Similarity=0.438 Sum_probs=117.7
Q ss_pred CCCChhhhccHHHHHHHhhh---------------------------CCcEEEEec--CCCCC--CcEEEEEEEcCCCCC
Q psy6012 1 MSSPSAGKRRMDTDVIKLIE---------------------------SKHEVTILG--AVFYY--GGVWKVRVHLPEHYS 49 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~---------------------------~~W~~~i~G--~tpY~--Gg~f~~~i~fp~~YP 49 (168)
|| +.+.+||++|+++|++ .+|+++|.| +|||+ ||.|+++|.||++||
T Consensus 5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP 82 (167)
T 4ds2_A 5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP 82 (167)
T ss_dssp CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence 77 5789999999999964 159999999 99999 999999999999999
Q ss_pred CCCCeeeEeccccCCcCCCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcC--CCCCCCccHHHHHHHhh
Q psy6012 50 SKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTY--PNPIDPLNGDAAAMYLH 127 (168)
Q Consensus 50 ~~pP~v~F~t~i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~--p~~~~p~n~~aa~~y~~ 127 (168)
++||+|+|.|+||||||+. +|.||+++|.++|+|+++++++|+.+++.|+.+ |++++|+|.+||++|++
T Consensus 83 ~~pP~v~f~t~i~HPnv~~---------~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~ 153 (167)
T 4ds2_A 83 HEPPTVRFVTPVYSPLVTG---------EGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEK 153 (167)
T ss_dssp TSCCEEEESSCCCCSSCCT---------TSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHH
T ss_pred CCCCEEEEeCCcccccCCC---------CCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHH
Confidence 9999999999999999998 999999999999999999999887766888875 89999999999999999
Q ss_pred CHHHHHHHHH
Q psy6012 128 KPDEYKKKCL 137 (168)
Q Consensus 128 d~~~f~~~~r 137 (168)
|+++|.++||
T Consensus 154 d~~~f~~~vr 163 (167)
T 4ds2_A 154 FPQDFAARVR 163 (167)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=244.23 Aligned_cols=132 Identities=21% Similarity=0.395 Sum_probs=122.1
Q ss_pred hhhhccHHHHHHHhhhC-------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecc---
Q psy6012 5 SAGKRRMDTDVIKLIES-------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNK--- 60 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~-------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~--- 60 (168)
+.+.+||++|+++|.++ .|+++|.| +|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~ 154 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCC
Confidence 68899999999999642 59999999 9999999999999999999999999999998
Q ss_pred --ccCCcCCCCCccceeeccceEEeccCC-------Ccccccc-chhchHHhHHHHHhc--CCCCCCCccHHH--HHHHh
Q psy6012 61 --MYHPNIDGGTLNRIFYISGTVCLDVIN-------QAWTALY-DLSNIFECFLPQLLT--YPNPIDPLNGDA--AAMYL 126 (168)
Q Consensus 61 --i~HpnI~~~~~~~~~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~~ll~--~p~~~~p~n~~a--a~~y~ 126 (168)
||||||+. +|.||+++|. +.|+|++ +|.+||++| ++||. +|++++|+|.++ +.+|.
T Consensus 155 ~~ifHPNV~~---------~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsI-qsLL~~~~Pn~~dP~~~~a~a~~~~~ 224 (323)
T 3ceg_A 155 SVRFNPNLYN---------DGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSV-QSLILVAEPYFNEPGYERSRGTPSGT 224 (323)
T ss_dssp TCCCBTTBCT---------TCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHH-HHHTSCSSGGGGSTTGGGGTTSHHHH
T ss_pred cccccCCCCc---------CCeEechhhccccCCCcCCCCcCcCCHHHHHHHH-HHHHcCCCCCCCCccCHHHHHhhhhh
Confidence 99999998 9999999997 6899999 899999999 79985 778899999987 67999
Q ss_pred hCHHHHHHHHHHHHhCccCC
Q psy6012 127 HKPDEYKKKCLPTMLAPESN 146 (168)
Q Consensus 127 ~d~~~f~~~~r~~~~~~~~~ 146 (168)
+|+++|.++||+++++++..
T Consensus 225 ~d~~~Y~~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 225 QSSREYDGNIRQATVKWAML 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHHHhhH
Confidence 99999999999999998754
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=4.4e-35 Score=225.66 Aligned_cols=113 Identities=15% Similarity=0.341 Sum_probs=103.8
Q ss_pred hhhhccHHHHHHHhhhC-------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 5 SAGKRRMDTDVIKLIES-------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~-------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
+++.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 56889999999998742 59999999 8999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceE---EeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhC
Q psy6012 64 PNIDGGTLNRIFYISGTV---CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHK 128 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d 128 (168)
|||+. +|.| |+++|+ +|+|++++++||++| ++||.+|+.++|+|.+|+++|++|
T Consensus 100 PNV~~---------~G~icisCL~iL~-~WsP~~ti~~vL~sI-~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 100 SCVDN---------CGRVIKNNLHILK-NWNRNYTIETILISL-RQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp TTBCT---------TSBBCGGGSHHHH-TCCTTCCHHHHHHHH-HHHTTSTTTTTCCCCCTTCBC---
T ss_pred CCCcc---------CCeEehhhccccc-CCCCcCcHHHHHHHH-HHHHhCCCCCCcCChHHHHHhhhC
Confidence 99998 8999 888887 599999999999999 799999999999999999999765
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3.8e-35 Score=221.52 Aligned_cols=114 Identities=17% Similarity=0.295 Sum_probs=103.0
Q ss_pred CCCChhhhccHHHHHHHhhhC-------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEec
Q psy6012 1 MSSPSAGKRRMDTDVIKLIES-------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 1 ms~~~~a~~Rl~~d~~~l~~~-------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
||. .++.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|
T Consensus 2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 80 (138)
T 1jat_B 2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 80 (138)
T ss_dssp -CC-CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc
Confidence 664 57789999999998642 59999999 999999999999999999999999999999
Q ss_pred cccCCcCCCCCccceeeccceE--EeccCCCccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHH
Q psy6012 60 KMYHPNIDGGTLNRIFYISGTV--CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125 (168)
Q Consensus 60 ~i~HpnI~~~~~~~~~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y 125 (168)
+||||||+. .+|.| |++++. +|+|++++++||.+| ++||.+|++++|+|.+|+++|
T Consensus 81 ~i~HPnv~~--------~~G~i~~cL~~l~-~W~p~~~i~~vl~~i-~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 81 KINLPCVNP--------TTGEVQTDFHTLR-DWKRAYTMETLLLDL-RKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCCTTBCT--------TTCBBCTTSHHHH-TCCTTCCHHHHHHHH-HHHHTSHHHHTSCCCCTTCBC
T ss_pred ccccCCEeC--------CCCEEeeecccCC-CCCCcCcHHHHHHHH-HHHHcCCCCCCCCCcchhhcC
Confidence 999999998 34999 899886 899999999999999 799999999999999988654
No 45
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3e-33 Score=207.88 Aligned_cols=100 Identities=18% Similarity=0.432 Sum_probs=87.7
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccc-cCCcC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKM-YHPNI 66 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i-~HpnI 66 (168)
+.|.+||++|+++|+++ +|+++|.| +|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35789999999999763 69999999 99999999999999999999999999999997 99999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCCC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPI 114 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~~ 114 (168)
+. +|.||+++|.++|+|++++++||.+| ++||.+|+..
T Consensus 85 ~~---------~G~iCl~iL~~~W~P~~~i~~vl~si-~~ll~~p~~~ 122 (125)
T 2fo3_A 85 YS---------NGDICLSLLGDDYNPSLSISGLVLSI-ISMLSSAKEK 122 (125)
T ss_dssp CT---------TSBBCCGGGTTTCCTTCCHHHHHHHH-HHHHC-----
T ss_pred CC---------CCEEEchhcCCCCCCCCcHHHHHHHH-HHHHhCcccc
Confidence 98 99999999999999999999999999 7999998765
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.2e-33 Score=218.36 Aligned_cols=109 Identities=15% Similarity=0.301 Sum_probs=100.9
Q ss_pred hhhhccHHHHHHHhhhC-------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 5 SAGKRRMDTDVIKLIES-------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~-------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
.++.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 56889999999998641 59999999 8999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCC--CccccccchhchHHhHHHHHh-cCCCCCCCccHHHH
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVIN--QAWTALYDLSNIFECFLPQLL-TYPNPIDPLNGDAA 122 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~~ll-~~p~~~~p~n~~aa 122 (168)
|||+. .+|+||+++|. ++|+|++++++||++| ++|| .+||.++|+|.|||
T Consensus 104 PNV~~--------~~G~ICl~iL~~~~~WsP~~ti~~vL~sI-~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 104 NGVNS--------SNGVVDPRAISVLAKWQNSYSIKVVLQEL-RRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TTBCT--------TTCBBCGGGSHHHHTCCTTCCHHHHHHHH-HHHHTSTTTTTCCCCCTTC
T ss_pred CCEEC--------CCCEEehhhcCCccCCCccCcHHHHHHHH-HHHHccCCCCCCCCChhhc
Confidence 99994 39999999998 8999999999999999 6888 57999999999987
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.98 E-value=1.8e-32 Score=206.58 Aligned_cols=99 Identities=19% Similarity=0.457 Sum_probs=93.4
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccc-cCCcC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKM-YHPNI 66 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i-~HpnI 66 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 46889999999999763 69999999 99999999999999999999999999999997 99999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhcCCCC
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNP 113 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~~p~~ 113 (168)
+. +|.||+++|.++|+|++++++||.+| ++||.+|+.
T Consensus 99 ~~---------~G~ICl~iL~~~WsP~~ti~~vL~si-~sll~~p~~ 135 (136)
T 2h2y_A 99 YS---------NGDICLSVLGDDYNPSLSISGLILSI-ISMLSSAKE 135 (136)
T ss_dssp CT---------TCCBCCGGGTTTCCTTCCHHHHHHHH-HHHHSSSCC
T ss_pred CC---------CCEEECccccCCCCCCCcHHHHHHHH-HHHHhCcCc
Confidence 98 99999999999999999999999999 799999874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=3.4e-33 Score=217.80 Aligned_cols=109 Identities=15% Similarity=0.294 Sum_probs=100.4
Q ss_pred hhhhccHHHHHHHhhhC-------------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccC
Q psy6012 5 SAGKRRMDTDVIKLIES-------------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYH 63 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~-------------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~H 63 (168)
+++.+||++|+++|+++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 45789999999998641 69999999 9999999999999999999999999999999999
Q ss_pred CcCCCCCccceeeccceEEeccCC--CccccccchhchHHhHHHHHhc-CCCCCCCccHHHH
Q psy6012 64 PNIDGGTLNRIFYISGTVCLDVIN--QAWTALYDLSNIFECFLPQLLT-YPNPIDPLNGDAA 122 (168)
Q Consensus 64 pnI~~~~~~~~~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~~ll~-~p~~~~p~n~~aa 122 (168)
|||+. .+|.||+++|. ++|+|+++|++||++| ++||. +||.++|+|.|||
T Consensus 114 PNV~~--------~~G~ICl~iL~~~~~WsP~~ti~~vL~sI-~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNS--------SNGVVDPRAISVLAKWQNSYSIKVVLQEL-RRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCS--------SSCBBCTTTCHHHHTCCSSCCHHHHHHHH-HHHHHSTTTSSSCCCSSCC
T ss_pred CCEeC--------CCCEEEhhhcCCCCCCCccCcHHHHHHHH-HHHHccCCCCCCCCCcccc
Confidence 99994 39999999997 8999999999999999 68886 6999999999986
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.4e-31 Score=201.79 Aligned_cols=92 Identities=18% Similarity=0.532 Sum_probs=86.8
Q ss_pred hccHHHHHHHhhhC-----------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc--CCcC
Q psy6012 8 KRRMDTDVIKLIES-----------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMY--HPNI 66 (168)
Q Consensus 8 ~~Rl~~d~~~l~~~-----------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~--HpnI 66 (168)
.+||++|+++|+++ +|+++|.| +|||+||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 49999999999652 59999999 999999999999999999999999999999999 9999
Q ss_pred CCCCccceeeccceEEeccCCCccccccchhchHHhHHHHHhc
Q psy6012 67 DGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLT 109 (168)
Q Consensus 67 ~~~~~~~~~~~~G~icl~~l~~~W~p~~~i~~il~~i~~~ll~ 109 (168)
+. +|+||+++|+++|+|++++++||++| ++||.
T Consensus 104 ~~---------~G~ICL~iL~~~WsP~~ti~~vL~sI-~slL~ 136 (136)
T 2a7l_A 104 YS---------NGHICLSILTEDWSPALSVQSVCLSI-ISMLS 136 (136)
T ss_dssp CT---------TCBBCCGGGTTTCCTTSCHHHHHHHH-HHHTC
T ss_pred CC---------CCeEEchhcCCCCCCCCcHHHHHHHH-HHHhC
Confidence 98 99999999999999999999999999 68874
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.96 E-value=1.9e-29 Score=199.30 Aligned_cols=100 Identities=17% Similarity=0.411 Sum_probs=86.0
Q ss_pred hhhhccHHHHHHHhhhC---------------CcEEEEec--CCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCC
Q psy6012 5 SAGKRRMDTDVIKLIES---------------KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID 67 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~---------------~W~~~i~G--~tpY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~ 67 (168)
+++.+||++|+++|.++ +|+++|.| +|||+||+|+++|.||++||++||+|+|.|+ |||++
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 56788999999999863 69999999 9999999999999999999999999999999 99999
Q ss_pred CCCccceeeccceEEeccC---CCccccccchhchHHhHHHHHhcCCCCCCC
Q psy6012 68 GGTLNRIFYISGTVCLDVI---NQAWTALYDLSNIFECFLPQLLTYPNPIDP 116 (168)
Q Consensus 68 ~~~~~~~~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~~ll~~p~~~~p 116 (168)
. +|.||+++| .+.|+|+++|.+||.+| ++||.+|+++..
T Consensus 91 ~---------~G~ICL~iL~~~~~~W~P~~ti~~vL~si-~sll~~p~p~~g 132 (187)
T 2f4w_A 91 C---------NTRLCLSITDFHPDTWNPAWSVSTILTGL-LSFMVEKGPTLG 132 (187)
T ss_dssp T---------TSCBC----------CCTTCCHHHHHHHH-HHHHHSCCCCTT
T ss_pred c---------CCeEeeeccccCccCCCCcCcHHHHHHHH-HHHhcCCCCCCc
Confidence 8 999999999 68999999999999999 799999987643
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.96 E-value=2.6e-31 Score=209.76 Aligned_cols=121 Identities=10% Similarity=0.222 Sum_probs=105.8
Q ss_pred hhhhccHHHHHHHhhhC------------------CcEEEEec---CCCCCC-----------cEEEEEEEcCCCCCCCC
Q psy6012 5 SAGKRRMDTDVIKLIES------------------KHEVTILG---AVFYYG-----------GVWKVRVHLPEHYSSKS 52 (168)
Q Consensus 5 ~~a~~Rl~~d~~~l~~~------------------~W~~~i~G---~tpY~G-----------g~f~~~i~fp~~YP~~p 52 (168)
+.+.+||++|+++|+++ +|+++|.| +|||+| |.|+|+|.||++||++|
T Consensus 26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P 105 (186)
T 1zuo_A 26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP 105 (186)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence 67899999999999642 59999998 699998 89999999999999999
Q ss_pred CeeeEeccccCC-cCCCCCccceeeccceEEeccCC-CccccccchhchHHhHHHHHhcCCCCCCCccHHHHHHHhhCHH
Q psy6012 53 PSIGFKNKMYHP-NIDGGTLNRIFYISGTVCLDVIN-QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPD 130 (168)
Q Consensus 53 P~v~F~t~i~Hp-nI~~~~~~~~~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~ll~~p~~~~p~n~~aa~~y~~d~~ 130 (168)
|+|+|.|++||| ||+. +|.||+++|. ++|+|+++|++||++| ++||.+|+... .|..+++
T Consensus 106 P~V~f~tpi~hPnnV~~---------~G~ICL~iL~~~~WsP~~ti~~VL~sI-~slL~~p~a~~--------~~~~~~~ 167 (186)
T 1zuo_A 106 PFVRVVLPVLSGGYVLG---------GGALCMELLTKQGWSSAYSIESVIMQI-NATLVKGKARV--------QFGANKN 167 (186)
T ss_dssp CEEEEEESCEESTTBCG---------GGBBCCGGGSTTTCCTTSCHHHHHHHH-HHHHHHTTCEE--------CTTCCTT
T ss_pred CeEEEeCCccCCCccCC---------CCcEEeccCCCCCCCCcCcHHHHHHHH-HHHHcCCChhH--------hhccCHH
Confidence 999999999999 6998 9999999997 7899999999999999 79999885432 3555677
Q ss_pred HHHHHHHHHHhCc
Q psy6012 131 EYKKKCLPTMLAP 143 (168)
Q Consensus 131 ~f~~~~r~~~~~~ 143 (168)
+|.+++++++.++
T Consensus 168 ~Y~~~~~~~~~~~ 180 (186)
T 1zuo_A 168 QYNLARAQQSYNS 180 (186)
T ss_dssp CCCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 8887777777654
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.87 E-value=1.9e-23 Score=161.26 Aligned_cols=85 Identities=14% Similarity=0.303 Sum_probs=78.1
Q ss_pred hccHHHHHHHhhh---------CCcEEEEec--CCCCCCc----------EEEEEEEcCCCCCCCCCeeeEecc-ccCCc
Q psy6012 8 KRRMDTDVIKLIE---------SKHEVTILG--AVFYYGG----------VWKVRVHLPEHYSSKSPSIGFKNK-MYHPN 65 (168)
Q Consensus 8 ~~Rl~~d~~~l~~---------~~W~~~i~G--~tpY~Gg----------~f~~~i~fp~~YP~~pP~v~F~t~-i~Hpn 65 (168)
.+||++|++.|++ .+|.++|.| +|+|+|| .|++++.||++||++||+|+|.++ ++|||
T Consensus 34 ~~RL~eE~k~L~k~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpn 113 (172)
T 2z6o_A 34 VQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK 113 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSS
T ss_pred HHHHHHHHHHHHHHhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCC
Confidence 8899999999976 379999999 9999999 999999999999999999999998 99999
Q ss_pred CCCCCccceeeccceEEeccC-CC---ccccccchhchHH
Q psy6012 66 IDGGTLNRIFYISGTVCLDVI-NQ---AWTALYDLSNIFE 101 (168)
Q Consensus 66 I~~~~~~~~~~~~G~icl~~l-~~---~W~p~~~i~~il~ 101 (168)
|+. +|+||++++ ++ .|+|.++|.++|.
T Consensus 114 mY~---------~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 114 MYR---------GGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp BCT---------TSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCC---------CCcEechhhccccccccCCccCHHHHHh
Confidence 998 999999999 43 4559999999874
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.72 E-value=7.7e-18 Score=130.03 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=84.2
Q ss_pred hccHHHHHHHhhhC------------------CcEEEEec--CCCCCCcE---EEEEEEcCCCCCCCCCeeeEec-----
Q psy6012 8 KRRMDTDVIKLIES------------------KHEVTILG--AVFYYGGV---WKVRVHLPEHYSSKSPSIGFKN----- 59 (168)
Q Consensus 8 ~~Rl~~d~~~l~~~------------------~W~~~i~G--~tpY~Gg~---f~~~i~fp~~YP~~pP~v~F~t----- 59 (168)
.+|..+|+..++.. ++-+.+.| +++|+||. |.+.|.||++||++||.|.|.+
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 35677888887541 47788888 89999999 8999999999999999998865
Q ss_pred --c---cc-CCcCCCCCccceeeccceEEeccCCCcccc-ccchhchHHhHHHHHhcCCCCCC
Q psy6012 60 --K---MY-HPNIDGGTLNRIFYISGTVCLDVINQAWTA-LYDLSNIFECFLPQLLTYPNPID 115 (168)
Q Consensus 60 --~---i~-HpnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~~ll~~p~~~~ 115 (168)
+ |+ |||||. +|+||+++|. +|++ +.++.++|.+| +++|.+|+++.
T Consensus 110 ~~~~~~I~~hpnVD~---------~G~I~lpyL~-~W~p~~s~L~~ll~~l-~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDS---------NGWIALPILH-AWDPAAMNLIMVVQEL-MSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCT---------TSBBCCGGGG-SCCGGGCCHHHHHHHH-HHTTSCCCCCC
T ss_pred cccccccCCCCCCCC---------CCcEeCcccc-cCCCCcCcHHHHHHHH-HHHhcCCCCCC
Confidence 1 77 999998 9999999995 6999 67999999999 69999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.60 E-value=4e-16 Score=118.33 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=68.7
Q ss_pred hccHHHHHHHhhh---------CCcEEEEec--CCCCCCc----------EEEEEEEcCCCCCCCCCeeeEecc-ccCCc
Q psy6012 8 KRRMDTDVIKLIE---------SKHEVTILG--AVFYYGG----------VWKVRVHLPEHYSSKSPSIGFKNK-MYHPN 65 (168)
Q Consensus 8 ~~Rl~~d~~~l~~---------~~W~~~i~G--~tpY~Gg----------~f~~~i~fp~~YP~~pP~v~F~t~-i~Hpn 65 (168)
..||+.|++.|+. +.|...+.| ||+|.|+ .|++++.||.+||.+||+|+|.+. ++|||
T Consensus 36 ~~RlkeEy~alI~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~k 115 (168)
T 3kpa_A 36 TARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSS
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCcc
Confidence 4589999999874 479999999 9999999 999999999999999999999995 89999
Q ss_pred CCCCCccceeeccceEEeccCCCccccccc
Q psy6012 66 IDGGTLNRIFYISGTVCLDVINQAWTALYD 95 (168)
Q Consensus 66 I~~~~~~~~~~~~G~icl~~l~~~W~p~~~ 95 (168)
++. +|+||+++. |+|.++
T Consensus 116 mYr---------~GkICLdIh---wkPlW~ 133 (168)
T 3kpa_A 116 MYR---------GGKICMTTH---FFPLWA 133 (168)
T ss_dssp EET---------TTEECCCTT---HHHHHH
T ss_pred ccC---------CCcEEeccc---cchhhH
Confidence 998 999999986 777554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.31 E-value=1.9e-12 Score=98.25 Aligned_cols=68 Identities=19% Similarity=0.451 Sum_probs=59.2
Q ss_pred CCCCCCcEEE--EEEEcCCCCCCCCCeeeEecc------ccCCcCCCCCccceeeccceEEeccCCCcccc-ccchhchH
Q psy6012 30 AVFYYGGVWK--VRVHLPEHYSSKSPSIGFKNK------MYHPNIDGGTLNRIFYISGTVCLDVINQAWTA-LYDLSNIF 100 (168)
Q Consensus 30 ~tpY~Gg~f~--~~i~fp~~YP~~pP~v~F~t~------i~HpnI~~~~~~~~~~~~G~icl~~l~~~W~p-~~~i~~il 100 (168)
..+|+|+.|. +.|+||++||++||.| |.++ ..|||||. +|+||++.|.+ |++ ..++.+++
T Consensus 61 pv~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~---------~G~i~lpyL~~-W~~~~snL~~ll 129 (146)
T 3obq_A 61 PVPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA---------NGKIYLPYLHE-WKHPQSDLLGLI 129 (146)
T ss_dssp EEECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT---------TCBBCCHHHHT-CCTTTCCHHHHH
T ss_pred eeeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC---------CCCEecccccc-cCCCCCCHHHHH
Confidence 4799999998 5999999999999999 6665 48999998 99999999964 998 78999999
Q ss_pred HhHHHHHhc
Q psy6012 101 ECFLPQLLT 109 (168)
Q Consensus 101 ~~i~~~ll~ 109 (168)
..+. .+|.
T Consensus 130 ~~l~-~~F~ 137 (146)
T 3obq_A 130 QVMI-VVFG 137 (146)
T ss_dssp HHHH-HHHH
T ss_pred HHHH-HHHh
Confidence 9984 6654
No 56
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.59 E-value=0.0041 Score=44.46 Aligned_cols=54 Identities=7% Similarity=0.045 Sum_probs=11.1
Q ss_pred cCCCCCCCccHHHHHHHhhCHHHHHHHHHHHHhCcc-----CCCC---CccCCcccccCccc
Q psy6012 109 TYPNPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPE-----SNPG---LPRARRVTTMPWEQ 162 (168)
Q Consensus 109 ~~p~~~~p~n~~aa~~y~~d~~~f~~~~r~~~~~~~-----~~~~---~~~~~~~~~~~~~~ 162 (168)
.--....|.+.++|++|+++++.|...+|.|+.-++ ..|+ .+....|.+|+|.+
T Consensus 19 ~~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL~eMGF~d 80 (108)
T 2cwb_A 19 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQD 80 (108)
T ss_dssp --------------------------------------------CCTTHHHHHHHHTTTCCC
T ss_pred cCcccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCCcccchHHHHHHHHHcCCCC
Confidence 333456799999999999999999999999994444 3333 36788999999843
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.45 Score=34.22 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.8
Q ss_pred cEEEEEEEcCCCCCCCCCeeeEec
Q psy6012 36 GVWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
-.+.+.+.+|++||..+|.|....
T Consensus 62 ~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 62 SSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CEEEEEEECCSSTTSSCCEEEEEC
T ss_pred eEEEEEEECCCCCCCCCCeEEEec
Confidence 467889999999999999998764
No 58
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.30 E-value=0.16 Score=36.15 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.2
Q ss_pred CcEEEEEEEcCCCCCCCCCeeeEec
Q psy6012 35 GGVWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 35 Gg~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
.-.+.+.|.||++||..||.+....
T Consensus 54 ~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 54 TVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred ceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3477899999999999999987654
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=90.17 E-value=0.23 Score=35.30 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=21.1
Q ss_pred cEEEEEEEcCCCCCCCCCeeeEec
Q psy6012 36 GVWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
-.+.+.|.||++||..+|.|...+
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEE
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEc
Confidence 367889999999999999998775
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=89.42 E-value=1.5 Score=33.91 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=50.6
Q ss_pred ccHHHHHHHhhhCCcEEEEecCC----------CCCCcEEEEEEEcCCCCCCCCCeeeEeccccCCcCCCCCccceeecc
Q psy6012 9 RRMDTDVIKLIESKHEVTILGAV----------FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYIS 78 (168)
Q Consensus 9 ~Rl~~d~~~l~~~~W~~~i~G~t----------pY~Gg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnI~~~~~~~~~~~~ 78 (168)
.+|.+|+..+ -|+-.+..++ -=.|....++|.++.+||.++|.+.-.-|+ |.
T Consensus 4 ~~li~Ei~~i---GW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------- 65 (186)
T 3zqs_A 4 SSLIEEIGTL---GWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPV--PF------------- 65 (186)
T ss_dssp CSHHHHHHHH---CGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSS--CC-------------
T ss_pred HHHHHHHHHh---CCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-------------
Confidence 4788888888 4543333311 125788999999999999999987554432 11
Q ss_pred ceEEeccCCCccccccchhchHHhHHHHHh
Q psy6012 79 GTVCLDVINQAWTALYDLSNIFECFLPQLL 108 (168)
Q Consensus 79 G~icl~~l~~~W~p~~~i~~il~~i~~~ll 108 (168)
.-.|++..++.+++..+. ..+
T Consensus 66 --------~~~w~~~ssL~~v~~qF~-~~L 86 (186)
T 3zqs_A 66 --------CASWTPQSSLISIYSQFL-AAI 86 (186)
T ss_dssp --------CCCCCTTCCHHHHHHHHH-HHH
T ss_pred --------ccccCCCccHHHHHHHHH-HHH
Confidence 126999889999988874 443
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=88.41 E-value=0.27 Score=35.29 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEEEEcCCCCCCCCCeeeEe
Q psy6012 36 GVWKVRVHLPEHYSSKSPSIGFK 58 (168)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~F~ 58 (168)
-.+.+.|.||++||..+|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 36889999999999999999774
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.65 E-value=0.3 Score=34.80 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.8
Q ss_pred cEEEEEEEcCCCCCCCCCeeeEe
Q psy6012 36 GVWKVRVHLPEHYSSKSPSIGFK 58 (168)
Q Consensus 36 g~f~~~i~fp~~YP~~pP~v~F~ 58 (168)
-.+.+.|.+|++||..+|.|...
T Consensus 56 ~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 56 IPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECSSTTSSCCCCCCC
T ss_pred eEEEEEEECCCCCCCCCCeEEEE
Confidence 37889999999999999998654
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=86.67 E-value=0.49 Score=34.79 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCCCCCCeeeEec
Q psy6012 37 VWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 37 ~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
.+.+.|.+|.+||..||.+....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 57889999999999999997665
No 64
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=85.87 E-value=0.73 Score=34.13 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCCCCCCeeeEec
Q psy6012 37 VWKVRVHLPEHYSSKSPSIGFKN 59 (168)
Q Consensus 37 ~f~~~i~fp~~YP~~pP~v~F~t 59 (168)
.+.++|.+|.+||..+|.|....
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 78999999999999999987654
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=25.07 E-value=59 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCCcEEEEEEEcCCCCCC-----CCCeeeEe
Q psy6012 33 YYGGVWKVRVHLPEHYSS-----KSPSIGFK 58 (168)
Q Consensus 33 Y~Gg~f~~~i~fp~~YP~-----~pP~v~F~ 58 (168)
=+.|.|.|+-.+|--||. .||.|.|.
T Consensus 108 d~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 108 FGTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 357999999999999998 79998887
Done!