RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6012
(168 letters)
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 155 bits (394), Expect = 4e-49
Identities = 105/148 (70%), Positives = 113/148 (76%), Gaps = 21/148 (14%)
Query: 1 MSSPSAGKRRMDTDVIKLIESKHEVTILGAVF-------------YYGGVWKVRVHLPEH 47
MSSPS GKRRMDTDVIKLIESKHEVTILG + Y GGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 48 YSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQL 107
Y KSPSIGF NK++HPNID SGTVCLDVINQ WTALYDL+NIFE FLPQL
Sbjct: 80 YPFKSPSIGFMNKIFHPNID--------EASGTVCLDVINQTWTALYDLTNIFESFLPQL 131
Query: 108 LTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
L YPNPIDPLNGDAAAMYLH+P+EYK+K
Sbjct: 132 LAYPNPIDPLNGDAAAMYLHRPEEYKQK 159
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 141 bits (357), Expect = 1e-43
Identities = 59/148 (39%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 2 SSPSAGKRRMDTDVIKLIESKHEVTILGAVF-------------YYGGVWKVRVHLPEHY 48
+ RR + D ++L S +V V Y G W + V LP Y
Sbjct: 8 AGNLRSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDY 67
Query: 49 SSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLL 108
KSPSIGF N++ HPN+D SG+VCLDVINQ WT +Y L NIF+ FLPQLL
Sbjct: 68 PFKSPSIGFCNRILHPNVD--------ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLL 119
Query: 109 TYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
YPNP DPLN AA + +
Sbjct: 120 RYPNPSDPLNVQAAHLLHADRVGFDALL 147
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 134 bits (340), Expect = 3e-41
Identities = 66/143 (46%), Positives = 84/143 (58%), Gaps = 22/143 (15%)
Query: 8 KRRMDTDVIKLIESKHEVTILG-------AVF-------YYGGVWKVRVHLPEHYSSKSP 53
R D KLI + +++ + +F Y GG+WKV V LP+ Y SP
Sbjct: 4 LTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASP 63
Query: 54 SIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNP 113
SIGF NK+ HPN+D SG+VCLDVINQ WT LY L N+FE FLPQLLTYPNP
Sbjct: 64 SIGFMNKLLHPNVD--------EASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNP 115
Query: 114 IDPLNGDAAAMYLHKPDEYKKKC 136
DPLN DAA++ + + Y++K
Sbjct: 116 SDPLNSDAASLLMKDKNIYEEKV 138
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 102 bits (257), Expect = 4e-28
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + V + +P Y K P + F K+YHPNI T G +CLD++ AW+
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT--------GAICLDILRNAWSP 98
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ L + L LL P P DP + + A YL + + K
Sbjct: 99 VITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKT 140
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 103 bits (257), Expect = 8e-28
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG +++ + +PE Y P + F K++HPNI T G +CLD++ W A
Sbjct: 104 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT--------GAICLDILKDQWAA 155
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
L + L LL P DP + A Y P+ +K+
Sbjct: 156 AMTLRTVLL-SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQT 197
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 99.7 bits (249), Expect = 2e-27
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I G Y GG +++ + +PE Y P + F K++HPNI T G +
Sbjct: 44 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT--------GAI 95
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W A L + L LL P DP + A Y P+ +K+
Sbjct: 96 CLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQT 148
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 99.4 bits (248), Expect = 7e-27
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG +++ + +PE Y P + F K++HPNI T G +CLD++ W A
Sbjct: 52 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT--------GAICLDILKDQWAA 103
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
L + L LL P DP + A Y P+ +K+
Sbjct: 104 AMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQT 145
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 96.9 bits (242), Expect = 2e-26
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I G + GG +K+ + E Y +K P++ F ++M+HPNI Y G++
Sbjct: 37 NAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI---------YADGSI 87
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ +YD++ I LL PNP P N +AA MY EY ++
Sbjct: 88 CLDILQNQWSPIYDVAAILTSIQ-SLLCDPNPNSPANSEAARMYSESKREYNRR 140
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 97.1 bits (242), Expect = 2e-26
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 24 EVTILGAV--FYY--GGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISG 79
+ + Y G +++ V + Y + P++ F +Y P + G G
Sbjct: 53 ILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG---------EG 103
Query: 80 TVCLDVINQAWTALYDLSNIFECFLPQL--LTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+C ++N WT S++ + L ++ D +N +A P ++ +
Sbjct: 104 GICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAAR 161
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 96.2 bits (240), Expect = 3e-26
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + V + +P Y K P + F K+YHPNI T G +CLD++ AW+
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT--------GAICLDILKNAWSP 97
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ L + LL P P DP + + A YL + + K
Sbjct: 98 VITLKSALISLQ-ALLQSPEPNDPQDAEVAQHYLRDRESFNKT 139
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 96.3 bits (240), Expect = 6e-26
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I+G Y G +++ + E Y +K P + F ++M+HPN+ Y +G +
Sbjct: 37 NAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV---------YANGEI 87
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ WT YD+++I L PNP P N +AA ++ +Y K+
Sbjct: 88 CLDILQNRWTPTYDVASILTSIQ-SLFNDPNPASPANVEAATLFKDHKSQYVKR 140
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 95.4 bits (238), Expect = 8e-26
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
FY G + + + Y P + + +YHPNID + G VCL+++ + W
Sbjct: 47 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID---------LEGNVCLNILREDWK 97
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ +++I L L PNP DPLN +AA + + +++
Sbjct: 98 PVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQN 140
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 95.9 bits (239), Expect = 1e-25
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
FY G + + + Y P + + +YHPNID + G V L+++ + W
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID---------LEGNVALNILREDWK 117
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ +++I L L PNP DPLN +AA + + +++
Sbjct: 118 PVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQN 160
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 96.0 bits (239), Expect = 1e-25
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 1 MSSPSAG-KRRMDTDVIKLIESKHEVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGF 57
P+ D +S I+ +Y G + E Y + P +
Sbjct: 42 DLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101
Query: 58 KNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPL 117
K++HPNID + G VCL+++ + W+ DL +I L L PNP DPL
Sbjct: 102 LKKIFHPNID---------LKGNVCLNILREDWSPALDLQSIITG-LLFLFLEPNPNDPL 151
Query: 118 NGDAAAMYLHKPDEYKKK 135
N DAA + E+ +
Sbjct: 152 NKDAAKLLCEGEKEFAEA 169
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 94.6 bits (236), Expect = 2e-25
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y G++++ ++LP+ Y ++P + F K+YHPNID G +
Sbjct: 38 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR---------LGRI 88
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLDV+ W+ + + + LL PNP DPL D A ++ K K
Sbjct: 89 CLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLANDVAEDWIKNEQGAKAK 141
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 94.6 bits (236), Expect = 2e-25
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+VTI G Y GG++++++ L + + + P F K++HPN+ +G +
Sbjct: 46 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA---------NGEI 96
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
C++V+ + WTA + ++ LL +PNP LN +A + L +EY +
Sbjct: 97 CVNVLKRDWTAELGIRHVLLTIK-CLLIHPNPESALNEEAGRLLLENYEEYAAR 149
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 95.6 bits (238), Expect = 2e-25
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I G + Y GG + + + +P Y P + F K++HPNI T G +
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT--------GAI 129
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ + +L P P DP + + A M + + +
Sbjct: 130 CLDILKHEWSPALTIRTALLSIQ-AMLADPVPTDPQDAEVAKMMIENHPLFVQT 182
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 94.2 bits (235), Expect = 2e-25
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 37 QATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 87
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ +S + LL PNP DPL + A +Y + Y +
Sbjct: 88 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRERYNQL 140
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 95.2 bits (237), Expect = 2e-25
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
TILG Y GGV+ + + Y K P + F+ ++YH NI+ G +
Sbjct: 81 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS---------QGVI 131
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ +S + LLT NP DPL G A Y+ E+ +
Sbjct: 132 CLDILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDRM 184
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 93.8 bits (234), Expect = 2e-25
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ I G Y GG +K+ + LPE Y + P + F K+YHPNID G +
Sbjct: 34 NILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK---------LGRI 84
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ + + + LL+ P P DPL+ A + ++ +
Sbjct: 85 CLDILKDKWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHV 137
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 93.9 bits (234), Expect = 3e-25
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
V I G + GG +K+ + LPE Y +P + F K+YHPN+D G +
Sbjct: 38 HVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK---------LGRI 88
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ + + LL+ PNP DPL D A + + +
Sbjct: 89 CLDILKDKWSPALQIRTVLLSIQ-ALLSAPNPDDPLANDVAEQWKTNEAQAIET 141
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 94.3 bits (235), Expect = 3e-25
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F K+YHPNI+ G +
Sbjct: 54 QATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS---------QGAI 104
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ +S + LLT PNP DPL + A +Y Y +
Sbjct: 105 CLDILKDQWSPALTISKVLLSIS-SLLTDPNPDDPLVPEIAHLYKSDRMRYDQT 157
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 93.5 bits (233), Expect = 5e-25
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 52 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 102
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 103 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRI 155
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 94.5 bits (235), Expect = 7e-25
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I G Y GG + + + +P Y P I F K++HPNI T G +
Sbjct: 56 VGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQT--------GAI 107
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CLDV+ W+ + + LL+ P P DP + + A MY + K
Sbjct: 108 CLDVLKNEWSPALTIRTALLS-IQALLSDPQPDDPQDAEVAKMYKENHALFVKT 160
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 91.9 bits (229), Expect = 2e-24
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
T+ G Y +K+ + P Y K P + F +HPN+D SG +
Sbjct: 42 VATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ---------SGNI 92
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
CLD++ + WTA YD+ I LL PN PLN AA M+ EYKK
Sbjct: 93 CLDILKENWTASYDVRTILLSLQ-SLLGEPNNASPLNAQAADMW-SNQTEYKKVL 145
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 91.6 bits (228), Expect = 3e-24
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+V I G + GG++K+ + PE Y ++ P F ++HPN+ Y SGTV
Sbjct: 48 KVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV---------YPSGTV 98
Query: 82 CLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CL ++N + W + I LL PN P +A M+ EY+K+
Sbjct: 99 CLSILNEEEGWKPAITIKQILLGIQ-DLLDDPNIASPAQTEAYTMFKKDKVEYEKR 153
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 91.6 bits (228), Expect = 3e-24
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
E I G + GG++K+R+ + Y S P F+ ++HPN+ Y SGTV
Sbjct: 45 ECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV---------YPSGTV 95
Query: 82 CLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CL ++ + W + I +LL PN P +A +Y EY+K+
Sbjct: 96 CLSILEEDKDWRPAITIKQILLGIQ-ELLNEPNIQSPAQAEAYTIYCQNRVEYEKR 150
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 91.6 bits (228), Expect = 3e-24
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
E I G + GGV+ + V P Y SK P + F YHPN+ Y SGT+
Sbjct: 42 EAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV---------YPSGTI 92
Query: 82 CLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
CL ++N Q W L I + LL PNP P A + EY KK
Sbjct: 93 CLSILNEDQDWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 147
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 91.6 bits (228), Expect = 3e-24
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
TI GA Y +K+ + P Y +P++ F YHPN+D G +
Sbjct: 63 VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT---------QGNI 113
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
LD++ + W+ALYD+ I LL PN PLN AA ++ P +KK
Sbjct: 114 SLDILKEKWSALYDVRTILLSIQ-SLLGEPNIDSPLNTHAAELW-KNPTAFKKY 165
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 90.8 bits (226), Expect = 5e-24
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI-NQAWT 91
Y+ + +R+ P Y K P I F K+YHPN+D +G +CL +I ++ W
Sbjct: 48 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE---------NGQICLPIISSENWK 98
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ E L+ PN +PL D A + P+ ++K
Sbjct: 99 PCTKTCQVLEALN-VLVNRPNIREPLRMDLADLLTQNPELFRKN 141
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 90.5 bits (225), Expect = 9e-24
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
E I+G + GV+ + P Y P + F +M+HPNI Y G V
Sbjct: 37 EALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI---------YPDGRV 87
Query: 82 CLDVINQAWTALYDLSNIFECFLP------------QLLTYPNPIDPLNGDAAAMYLHKP 129
C+ +++ + E + P +L PN N DA+ M+
Sbjct: 88 CISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 147
Query: 130 DEYKKKC 136
+++ K
Sbjct: 148 EQFYKIA 154
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 90.1 bits (224), Expect = 1e-23
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I G + G V+++ +H Y+ P + F +HPN+D +G
Sbjct: 56 EVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH--------TGQP 107
Query: 82 CLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
C+D ++ + W Y LS+I +L+ P +P+N +AA + + Y+
Sbjct: 108 CIDFLDNPEKWNTNYTLSSILLALQ-VMLSNPVLENPVNLEAARILVKDESLYRTI 162
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 89.6 bits (223), Expect = 2e-23
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI-NQAWT 91
Y G +++ ++ P Y K P I FK K+YHPNID G VCL VI + W
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE---------KGQVCLPVISAENWK 96
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ + + L+ P P PL D A Y ++ K
Sbjct: 97 PATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEYSKDRKKFCKN 139
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 89.3 bits (222), Expect = 3e-23
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN----Q 88
Y GV+K+ V +PE Y + P I F +YHPNID +G +CLDV+
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS---------AGRICLDVLKLPPKG 98
Query: 89 AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
AW +++ + + L++ PNP DPL D ++ + + + K
Sbjct: 99 AWRPSLNIATVLTS-IQLLMSEPNPDDPLMADISSEFKYNKPAFLKN 144
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 88.6 bits (220), Expect = 6e-23
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGF-KNKMYHPNIDGGTLNRIFYISGT 80
E I G Y +++ + +P Y P I F +N + H N+ +G
Sbjct: 51 EAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK--------SATGE 102
Query: 81 VCLDVI-NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY-LHKPDEYKKKC 136
+CL+++ + WT ++DL + +LL P PL+ D + Y+
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV 159
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 87.4 bits (217), Expect = 1e-22
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ I G Y GV+ ++ P+ Y P + F + HPNI Y +G V
Sbjct: 38 DCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI---------YPNGEV 88
Query: 82 CLDVINQA-------------WTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHK 128
C+ +++ W+ + + I + +L+ PN N DA ++
Sbjct: 89 CISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM-SMLSEPNIESGANIDACILWRDN 147
Query: 129 PDEYKKKC 136
E++++
Sbjct: 148 RPEFERQV 155
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 87.5 bits (217), Expect = 2e-22
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I+G Y GGV+K + P+ Y + P + F +++HPN+ +G V
Sbjct: 51 EVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV---------DKNGDV 101
Query: 82 CLDVINQA-------------WTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYL-H 127
C+ ++++ W ++ + I + +L PN P N DAA +
Sbjct: 102 CISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI-SMLADPNGDSPANVDAAKEWRED 160
Query: 128 KPDEYKKKC 136
+ E+K+K
Sbjct: 161 RNGEFKRKV 169
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 90.0 bits (223), Expect = 6e-22
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 24 EVTILGAVF--YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ TI+G Y GGV+ + +H P Y K P + F ++YHPNI+ +G++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS---------NGSI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
LD++ W+ +S + LL PNP DPL + A +Y ++Y +
Sbjct: 87 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIA 140
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 83.2 bits (206), Expect = 6e-21
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQ--- 88
+Y GG ++ +P+ Y+ P + K++HPNI +G +CL ++ +
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE---------TGEICLSLLREHSI 107
Query: 89 ---AWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
W L ++ N DPLN +AA +L ++++ K
Sbjct: 108 DGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNK 157
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 83.6 bits (207), Expect = 6e-21
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 25/126 (19%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I G +Y GG +K R+ P Y P+ F KM+HPNI Y +G V
Sbjct: 41 EVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI---------YETGDV 91
Query: 82 CLDVINQA-------------WTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHK 128
C+ +++ W ++ I + LL PN P N DA+ MY
Sbjct: 92 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPANVDASVMYRKW 150
Query: 129 PDEYKK 134
+ K
Sbjct: 151 KESKGK 156
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 76.6 bits (189), Expect = 1e-18
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
TILG + ++ + + +Y P + F +K+ P ++ T G V
Sbjct: 43 NGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT--------GEV 94
Query: 82 CLDV-INQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
D + W Y + + L + + P +
Sbjct: 95 QTDFHTLRDWKRAYTMETLLLD-LRKEMATPANKKLRQPKEGETF 138
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 74.0 bits (182), Expect = 2e-17
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I+G Y ++ +++ Y P + F K+ ++ +
Sbjct: 62 TGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN-----GVVDPR 116
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ V+ + W Y + + + L +L+ + Y
Sbjct: 117 AISVLAK-WQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQCY 158
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 73.3 bits (180), Expect = 4e-17
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I+G Y ++ +++ Y P + F K+ ++ +
Sbjct: 72 TGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN-----GVVDPR 126
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ V+ + W Y + + + L +L+ + Y
Sbjct: 127 AISVLAK-WQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQCY 168
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 72.4 bits (178), Expect = 6e-17
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
TI G + ++ + + ++Y P++ F K+ + G V
Sbjct: 58 SCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV---------DNCGRV 108
Query: 82 CLDVIN--QAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAA 122
+ ++ + W Y + I ++L+ N P +
Sbjct: 109 IKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGE 151
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 64.3 bits (157), Expect = 5e-14
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNK-MYHPNIDGGTLNRIFYISGT 80
V +G Y V+K+++ P++Y K P + F K H ++ Y +G
Sbjct: 53 IVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV---------YSNGD 103
Query: 81 VCLDVINQAWTALYDLSNIFECFLPQLLTYPNP 113
+CL V+ + +S + + +L+
Sbjct: 104 ICLSVLGDDYNPSLSISGLILSII-SMLSSAKE 135
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 63.0 bits (154), Expect = 1e-13
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNK-MYHPNIDGGTLNRIFYISGT 80
V +G Y V+K+++ P+ Y K P + F K H ++ Y +G
Sbjct: 39 IVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV---------YSNGD 89
Query: 81 VCLDVINQAWTALYDLSNIFECFLPQLLTYPNP 113
+CL ++ + +S + + +L+
Sbjct: 90 ICLSLLGDDYNPSLSISGLVLSII-SMLSSAKE 121
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 59.7 bits (145), Expect = 3e-12
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKM--YHPNIDGGTLNRIFYISG 79
V + GA Y G +++ Y SP + F + HP++ Y +G
Sbjct: 57 IVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV---------YSNG 107
Query: 80 TVCLDVINQAWTALYDLSNI 99
+CL ++ + W+ + ++
Sbjct: 108 HICLSILTEDWSPALSVQSV 127
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 58.8 bits (142), Expect = 2e-11
Identities = 9/104 (8%), Positives = 27/104 (25%), Gaps = 11/104 (10%)
Query: 35 GGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVI-NQAWTAL 93
+ +++ P + + G +C++++ Q W++
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGG--------YVLGGGALCMELLTKQGWSSA 139
Query: 94 YDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHK-PDEYKKKC 136
Y + ++ L + L + Y
Sbjct: 140 YSIESVIMQIN-ATLVKGKARVQFGANKNQYNLARAQQSYNSIV 182
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 55.9 bits (135), Expect = 1e-10
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 11/98 (11%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG + ++ P + K PSI + D W
Sbjct: 58 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR--------LCLSITDFHPDTWNP 109
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPL--NGDAAAMYLHK 128
+ +S I L + P D L
Sbjct: 110 AWSVSTILTGLL-SFMVEKGPTLGSIETSDFTKRQLAV 146
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 45.8 bits (108), Expect = 2e-06
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 19/126 (15%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+V I G Y G ++ V+ P+ Y S P + + H N Y G V
Sbjct: 113 KVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVR----FNPNLYNDGKV 168
Query: 82 CLDVIN-------QAWT-ALYDLSNIFECFLPQLLTYPNPI--DPL--NGDAAAMYLHKP 129
CL ++N + W + + L+ P +P
Sbjct: 169 CLSILNTWHGRPEEKWNPQTSSFLQVL-VSVQSLILVAEPYFNEPGYERSRGTPSGTQSS 227
Query: 130 DEYKKK 135
EY
Sbjct: 228 REYDGN 233
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.25
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 131 EYKKKCLPTML---APESNPGL 149
KK L L A +S P L
Sbjct: 21 ALKK--LQASLKLYADDSAPAL 40
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs,
transferase; 2.40A {Infectious bursal disease virus}
PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Length = 852
Score = 26.2 bits (56), Expect = 7.0
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 97 SNIFECFLPQLLTYP-NPIDPLNGDAAAMYLHKPDEYKKKCLPTMLAPESNPGLPRARRV 155
++ E +P++ P +P+ + A + + + + LP E++ LP +
Sbjct: 33 QDVEELLIPKVWVPPEDPLASPSRLAKFLRENGYKVLQPRSLPENEEYETDQILPDLAWM 92
Query: 156 TTM 158
+
Sbjct: 93 RQI 95
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 26.0 bits (56), Expect = 7.1
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 55 IGFKNKMYHPNIDGGTLNRIFYIS--GTVCLDVINQAWTALYDLS---------NIFECF 103
+ + + IDG LNR+F G+V + + L +
Sbjct: 90 LAVQAWTRNTPIDGKNLNRVFPGRSDGSVSERIADAISRLLLPVVDTVLDLHSFGPTWDC 149
Query: 104 LPQLLTYPNPIDPLNGDAAAM 124
P ++++P ++
Sbjct: 150 APSIISHPIADIDQMTKTVSI 170
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 25.6 bits (57), Expect = 9.2
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 78 SGTVCLDVINQAW-TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAA 123
+D+ + L L++I +P + + +AAA
Sbjct: 183 LEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAA 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,725,734
Number of extensions: 155270
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 57
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)