RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6012
(168 letters)
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 95.6 bits (237), Expect = 2e-26
Identities = 101/145 (69%), Positives = 110/145 (75%), Gaps = 21/145 (14%)
Query: 4 PSAGKRRMDTDVIKLIESKHEVTILGAVF-------------YYGGVWKVRVHLPEHYSS 50
PS GKRRMDTDV+KLIESKHEVTILG + Y GGVWKVRV LP+ Y
Sbjct: 1 PSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 60
Query: 51 KSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTY 110
KSPSIGF NK++HPNID SGTVCLDVINQ WTALYDL+NIFE FLPQLL Y
Sbjct: 61 KSPSIGFMNKIFHPNID--------EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAY 112
Query: 111 PNPIDPLNGDAAAMYLHKPDEYKKK 135
PNPIDPLNGDAAAMYLH+P+EYK+K
Sbjct: 113 PNPIDPLNGDAAAMYLHRPEEYKQK 137
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 77.1 bits (189), Expect = 4e-19
Identities = 59/142 (41%), Positives = 72/142 (50%), Gaps = 21/142 (14%)
Query: 8 KRRMDTDVIKLIESKHE-----------VTILGAV--FYYGGVWKVRVHLPEHYSSKSPS 54
RR + D ++L S + V G Y G W + V LP Y KSPS
Sbjct: 2 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 61
Query: 55 IGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPI 114
IGF N++ HPN+D SG+VCLDVINQ WT +Y L NIF+ FLPQLL YPNP
Sbjct: 62 IGFCNRILHPNVD--------ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 113
Query: 115 DPLNGDAAAMYLHKPDEYKKKC 136
DPLN AA + +
Sbjct: 114 DPLNVQAAHLLHADRVGFDALL 135
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 73.3 bits (179), Expect = 1e-17
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y GGV+ + + Y K P + F+ ++YH NI G +CLD++ W+
Sbjct: 45 VYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNI---------NSQGVICLDILKDNWS 95
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+S + LLT NP DPL G A Y+ E+ +
Sbjct: 96 PALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDRM 138
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 71.3 bits (174), Expect = 5e-17
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y G +++ + E Y +K P + F ++M+HPN+ Y +G +CLD++ WT
Sbjct: 46 PYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV---------YANGEICLDILQNRWT 96
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
YD+++I + L PNP P N +AA ++ +Y K+
Sbjct: 97 PTYDVASIL-TSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRV 140
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 71.3 bits (174), Expect = 6e-17
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y G++++ ++LP+ Y ++P + F K+YHPNI G +CLDV+ W+
Sbjct: 46 PYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI---------DRLGRICLDVLKTNWS 96
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ + + LL PNP DPL D A ++ K K
Sbjct: 97 PALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 69.1 bits (168), Expect = 5e-16
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y GG + + + +P Y P + F K++HPNI +G +CLD++ W+
Sbjct: 57 PYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI--------SSQTGAICLDILKHEWS 108
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ + +L P P DP + + A M + + +
Sbjct: 109 PALTIRTAL-LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTA 152
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 69.0 bits (168), Expect = 6e-16
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 22 KHEVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNID--GGTLNRIF-- 75
K EV ++G Y GG +K + P Y K P + F ++++HPNID G I
Sbjct: 32 KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHD 91
Query: 76 YISGTVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ + W ++ + I + +LT PN P N DAA M E+KKK
Sbjct: 92 PGDDKWGYERPEERWLPVHTVETILLSVI-SMLTDPNFESPANVDAAKMQRENYAEFKKK 150
Query: 136 C 136
Sbjct: 151 V 151
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 67.9 bits (165), Expect = 1e-15
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GGV+ + +H P Y K P + F ++YHPNI +G++CLD++ W+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI---------NSNGSICLDILRSQWSP 95
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+S + LL PNP DPL + A +Y + Y +
Sbjct: 96 ALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRERYNQL 137
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 67.5 bits (164), Expect = 2e-15
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y GV+ ++ P+ Y P + F + HPNI Y +G VC+ +++
Sbjct: 47 PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI---------YPNGEVCISILHSPGD 97
Query: 92 ALYDLSNIFECFLP------------QLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
E + P +L+ PN N DA ++ E++++
Sbjct: 98 DPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQV 154
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 67.2 bits (163), Expect = 3e-15
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
Y GG +++ + +PE Y P + F K++HPNI ++G +CLD++ W
Sbjct: 50 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS--------SVTGAICLDILKDQWA 101
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
A L + L LL P DP + A Y P+ +K+
Sbjct: 102 AAMTLRTVL-LSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQT 144
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 66.7 bits (162), Expect = 3e-15
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT 91
+ G +K+ + E Y +K P++ F +KM+HPN+ Y G++CLD++ W+
Sbjct: 46 PFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV---------YADGSICLDILQNRWS 96
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
YD++ I + LL PNP P N AA +Y EY+K+
Sbjct: 97 PTYDVAAIL-TSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRV 140
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 65.6 bits (159), Expect = 8e-15
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
+ T LG Y GG + V + +P Y K P + F K+YHPNI ++G +
Sbjct: 35 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS--------SVTGAI 86
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
CLD++ AW+ + L + L LL P P DP + + A YL + + K
Sbjct: 87 CLDILKNAWSPVITLKSAL-ISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 140
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 64.7 bits (157), Expect = 2e-14
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y G + + + Y P + + +YHPNI + G VCL+++ + W
Sbjct: 45 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI---------DLEGNVCLNILREDWKP 95
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ +++I L L PNP DPLN +AA + + +++
Sbjct: 96 VLTINSII-YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 138
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 64.0 bits (155), Expect = 3e-14
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 32 FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVIN-QAW 90
Y G +++ ++ P Y K P I FK K+YHPNI G VCL VI+ + W
Sbjct: 42 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI---------DEKGQVCLPVISAENW 92
Query: 91 TALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ + + L+ P P PL D A Y ++ K
Sbjct: 93 KPATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEYSKDRKKFCKN 136
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 62.9 bits (152), Expect = 9e-14
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 22 KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISG 79
V I G + GG +K+ + LPE Y +P + F K+YHPN+ G
Sbjct: 33 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV---------DKLG 83
Query: 80 TVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+CLD++ W+ + + LL+ PNP DPL D A + + +
Sbjct: 84 RICLDILKDKWSPALQIRTVLLSIQ-ALLSAPNPDDPLANDVAEQWKTNEAQAIETA 139
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 60.2 bits (145), Expect = 9e-13
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 24 EVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
T+ G Y +K+ + P Y K P + F +HPN+ SG +
Sbjct: 42 VATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV---------DQSGNI 92
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
CLD++ + WTA YD+ I LL PN PLN AA M+ ++ EYKK
Sbjct: 93 CLDILKENWTASYDVRTILLSLQ-SLLGEPNNASPLNAQAADMWSNQT-EYKKVL 145
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 60.1 bits (145), Expect = 1e-12
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GG++++++ L + + + P F K++HPN+ +G +C++V+ + WTA
Sbjct: 50 YAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV---------GANGEICVNVLKRDWTA 100
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ ++ + LL +PNP LN +A + L +EY +
Sbjct: 101 ELGIRHVL-LTIKCLLIHPNPESALNEEAGRLLLENYEEYAAR 142
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 57.3 bits (138), Expect = 1e-11
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 24 EVTILGAV--FYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
I+G Y ++ +++ Y P + F K+ ++ +
Sbjct: 42 TGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN-----GVVDPR 96
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMY 125
+ V+ + W Y + + + +++ N P + Y
Sbjct: 97 AISVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPE-GQCY 138
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 56.3 bits (135), Expect = 2e-11
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWT- 91
Y+ + +R+ P Y K P I F K+YHPN+ +G +CL +I+
Sbjct: 44 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV---------DENGQICLPIISSENWK 94
Query: 92 ALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ E L+ PN +PL D A + P+ ++K
Sbjct: 95 PCTKTCQVLEALN-VLVNRPNIREPLRMDLADLLTQNPELFRKNA 138
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 56.3 bits (135), Expect = 3e-11
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 22 KHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISG 79
K TI G Y +K+ + P Y +P++ F YHPN+ G
Sbjct: 32 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV---------DTQG 82
Query: 80 TVCLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+ LD++ + W+ALYD+ I LL PN PLN AA ++ P +KK
Sbjct: 83 NISLDILKEKWSALYDVRTILLSIQ-SLLGEPNIDSPLNTHAAELW-KNPTAFKKYL 137
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 55.6 bits (133), Expect = 7e-11
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
E I G + GG++K+R+ + Y S P F+ ++HPN+ + +
Sbjct: 40 ECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE--- 96
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
++ W + I + +LL PN DP +A +Y EY+K+
Sbjct: 97 ----EDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 146
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 54.7 bits (131), Expect = 1e-10
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I G + G V+++ +H Y+ P + F +HPN+D I
Sbjct: 37 EVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD--PHTGQPCIDFLD 94
Query: 82 CLDVINQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKK 135
+ N +T LS+I +L+ P +P+N +AA + + Y+
Sbjct: 95 NPEKWNTNYT----LSSILLALQ-VMLSNPVLENPVNLEAARILVKDESLYRTI 143
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 54.1 bits (129), Expect = 2e-10
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTA 92
Y GV+K+ V +PE Y + P I F +YHPNID + + AW
Sbjct: 46 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK-----LPPKGAWRP 100
Query: 93 LYDLSNIFECFLPQLLTYPNPIDPLNGDAAAMYLHKPDEYKKKC 136
+++ + L++ PNP DPL D ++ + + + K
Sbjct: 101 SLNIAT-VLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNA 143
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 48.9 bits (116), Expect = 8e-09
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 24 EVTILGA--VFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTV 81
EV I+G Y GGV+K + P+ Y + P + F +++HPN+ +G V
Sbjct: 33 EVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV---------DKNGDV 83
Query: 82 CLDVINQAWTALYDLSNIFECFLP 105
C+ ++++ Y E +LP
Sbjct: 84 CISILHEPGEDKYGYEKPEERWLP 107
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 43.4 bits (102), Expect = 1e-06
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 31 VFYYGGVWK--VRVHLPEHYSSKSPSI-----GFKNKMYHPNIDGGTLNRIFYISGTVCL 83
V Y G + + + L + Y P ++D +G + L
Sbjct: 59 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA---------NGKIYL 109
Query: 84 DVINQAWTALYDLSNIFECFLPQLLTYPNPI 114
+++ DL + + + + P+
Sbjct: 110 PYLHEWKHPQSDLLGLIQVMI-VVFGDEPPV 139
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 41.9 bits (98), Expect = 3e-06
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 33 YYGGVWKVRVHLPEHYSSKSPSIGF--KNKMYHPNIDGGTLNRIFYISGTVCLDVINQAW 90
Y G +++ Y SP + F +N HP++ Y +G +CL ++ + W
Sbjct: 49 YEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV---------YSNGHICLSILTEDW 99
Query: 91 TALYDLSNIFECFLPQLLT 109
+ + ++ + +L+
Sbjct: 100 SPALSVQSVCLSII-SMLS 117
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 40.0 bits (93), Expect = 2e-05
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 31 VFYYGGVW---KVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTL--NRIFYISGTVCLDV 85
G V + +P Y K P I + + N +L +G + L +
Sbjct: 64 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPI 123
Query: 86 INQAWTALYDLSNIFECFLPQLLTYPNP 113
++ A +L + + + LL P
Sbjct: 124 LHCWDPAAMNLIMVVQELM-SLLHEPPQ 150
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 38.5 bits (89), Expect = 5e-05
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 21 SKHEVTILG--AVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYIS 78
V +G Y V+K+++ P+ Y K P + F K Y +
Sbjct: 28 RIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH--------VYSN 79
Query: 79 GTVCLDVINQAWTALYDLSNIFECFLPQLLT 109
G +CL ++ + +S + + +L+
Sbjct: 80 GDICLSLLGDDYNPSLSISGLVLSII-SMLS 109
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 38.7 bits (89), Expect = 8e-05
Identities = 9/118 (7%), Positives = 27/118 (22%), Gaps = 11/118 (9%)
Query: 21 SKHEVTILGAVFYYGGVWKVRVHLPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGT 80
H + + +++ P + + G
Sbjct: 51 PLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGY--------VLGGGA 102
Query: 81 VCLDVI-NQAWTALYDLSNIFECFLPQLLTYPNPIDPLNGD-AAAMYLHKPDEYKKKC 136
+C++++ Q W++ Y + ++ L + Y
Sbjct: 103 LCMELLTKQGWSSAYSIESVIMQIN-ATLVKGKARVQFGANKNQYNLARAQQSYNSIV 159
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 26.5 bits (58), Expect = 1.8
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 44 LPEHYSSKSPSIGFKNKMYHPNIDGGTLNRIFYISGTVCLDVINQAWTALYDLSNIFECF 103
L H+ S +I +K + G ++ + ++ +D + + +
Sbjct: 353 LKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAIL 412
Query: 104 LPQLLTYPNPIDPLNGDAAAMYLHKPDEYKK 134
+ L A PDEY++
Sbjct: 413 --SFARRGTIQEKLISVAGLAVHSGPDEYRR 441
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,774
Number of extensions: 31628
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 33
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)