Query psy6014
Match_columns 69
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 29240
Date Sat Aug 17 00:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kgh_A Venom peptide 2; insect 27.8 23 0.00077 19.8 1.0 9 46-54 25-33 (39)
2 1v90_A Delta-paluit1, delta-pa 23.1 24 0.0008 19.7 0.5 15 21-37 23-37 (38)
3 1eit_A MU-agatoxin-I, MU-AGA-I 21.0 23 0.0008 19.6 0.2 15 21-37 22-36 (37)
4 4b4o_A Epimerase family protei 18.1 12 0.00041 24.4 -1.6 15 2-16 6-21 (298)
5 3t3l_A Frataxin, mitochondrial 17.7 47 0.0016 21.6 1.2 13 38-50 71-83 (129)
6 1mkn_A Protein (midkine); hepa 17.1 40 0.0014 20.2 0.7 13 56-69 16-28 (59)
7 1pqr_A Alpha-A-conotoxin EIVA; 16.6 28 0.00097 18.5 -0.1 18 19-37 12-29 (31)
8 3oeq_A Frataxin homolog, mitoc 15.8 57 0.002 21.3 1.3 14 37-50 76-89 (123)
9 1ew4_A CYAY protein; friedreic 15.3 44 0.0015 20.9 0.6 17 38-59 58-74 (106)
10 1agg_A Omega-AGA-IVB, omega-ag 15.0 84 0.0029 18.0 1.7 16 18-33 22-37 (48)
No 1
>2kgh_A Venom peptide 2; insecticidal peptides, disulfide bond, neurotoxin, secreted, toxin; NMR {Brachypelma ruhnaui}
Probab=27.76 E-value=23 Score=19.83 Aligned_cols=9 Identities=33% Similarity=1.354 Sum_probs=6.0
Q ss_pred cccceeecc
Q psy6014 46 YSTGWKCGL 54 (69)
Q Consensus 46 ySTGW~CGL 54 (69)
-+-||.|-+
T Consensus 25 c~ggwkck~ 33 (39)
T 2kgh_A 25 CTGGWRCKI 33 (39)
T ss_dssp CCSSEEEET
T ss_pred ccCCceEEE
Confidence 357888854
No 2
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=23.11 E-value=24 Score=19.66 Aligned_cols=15 Identities=47% Similarity=1.145 Sum_probs=9.7
Q ss_pred eecccCCeeeeecCCCC
Q psy6014 21 CSCQRKKKRCYCFRPNR 37 (69)
Q Consensus 21 C~C~~~~krc~C~RP~~ 37 (69)
|+|+ ..-.|.| ||++
T Consensus 23 CsCr-~~p~C~C-R~~~ 37 (38)
T 1v90_A 23 CSCR-SMPYCRC-RNNS 37 (38)
T ss_dssp CCCS-SSSCCCC-CBCC
T ss_pred EccC-CCCccee-cCCC
Confidence 5676 5567888 6653
No 3
>1eit_A MU-agatoxin-I, MU-AGA-I; neurotoxin, excitatory insect toxin; NMR {Agelenopsis aperta} SCOP: g.3.6.2
Probab=21.00 E-value=23 Score=19.57 Aligned_cols=15 Identities=47% Similarity=1.329 Sum_probs=8.8
Q ss_pred eecccCCeeeeecCCCC
Q psy6014 21 CSCQRKKKRCYCFRPNR 37 (69)
Q Consensus 21 C~C~~~~krc~C~RP~~ 37 (69)
|+|+ ..-.|.| ||++
T Consensus 22 CsCr-~~p~C~C-R~~~ 36 (37)
T 1eit_A 22 CSCR-QPPKCIC-RNNN 36 (37)
T ss_dssp EEEE-ETTEEEE-EECC
T ss_pred EccC-CCCccee-cCCC
Confidence 4665 4556777 5543
No 4
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=18.14 E-value=12 Score=24.41 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=11.9
Q ss_pred Ccccee-cceecccCC
Q psy6014 2 GNSTSF-GRHLVSDLD 16 (69)
Q Consensus 2 tgGTtf-grhLV~~l~ 16 (69)
||||=| |+|||+.|.
T Consensus 6 TGatGfIG~~L~~~L~ 21 (298)
T 4b4o_A 6 GGGTGFIGTALTQLLN 21 (298)
T ss_dssp ETTTSHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 788765 999998874
No 5
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=17.71 E-value=47 Score=21.62 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.6
Q ss_pred CceeEEEecccce
Q psy6014 38 HEVWLFSRYSTGW 50 (69)
Q Consensus 38 ~~~WLFSRySTGW 50 (69)
.++||-|+.|-|.
T Consensus 71 ~QIWLASp~SGp~ 83 (129)
T 3t3l_A 71 KAIWLSSPSSGPK 83 (129)
T ss_dssp TEEEEECSSSCCE
T ss_pred hHhheeCCCCCCe
Confidence 4699999988763
No 6
>1mkn_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.1
Probab=17.06 E-value=40 Score=20.22 Aligned_cols=13 Identities=38% Similarity=0.826 Sum_probs=9.0
Q ss_pred ccchhhcccccCCC
Q psy6014 56 ADWTELTSCVHSSG 69 (69)
Q Consensus 56 ADwTELt~CV~~~~ 69 (69)
|+|| ...|||++|
T Consensus 16 ~ew~-~g~Cvp~~g 28 (59)
T 1mkn_A 16 AEWA-WGPCTPSSK 28 (59)
T ss_dssp SSSE-EECCCCSSS
T ss_pred cCce-eccccCCcC
Confidence 4555 568888875
No 7
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=16.62 E-value=28 Score=18.53 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=12.2
Q ss_pred CCeecccCCeeeeecCCCC
Q psy6014 19 RPCSCQRKKKRCYCFRPNR 37 (69)
Q Consensus 19 ~pC~C~~~~krc~C~RP~~ 37 (69)
.||.|.-++ --+|.||..
T Consensus 12 hpc~ckv~r-p~yc~rpsg 29 (31)
T 1pqr_A 12 HPCGCKVGR-PPYCDRPSG 29 (31)
T ss_dssp CTTCSSSSC-CHHHHSCCC
T ss_pred ccccccCCC-CCcCCCCCC
Confidence 388887443 457888865
No 8
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=15.84 E-value=57 Score=21.28 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=10.8
Q ss_pred CCceeEEEecccce
Q psy6014 37 RHEVWLFSRYSTGW 50 (69)
Q Consensus 37 ~~~~WLFSRySTGW 50 (69)
..++||-|+.|-|.
T Consensus 76 ~~QIWlaSp~SGp~ 89 (123)
T 3oeq_A 76 NKQIWLASPLSGPN 89 (123)
T ss_dssp SSCCEEEETTTEEE
T ss_pred hhHHheecCCCCCe
Confidence 34699999988763
No 9
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=15.35 E-value=44 Score=20.86 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=12.3
Q ss_pred CceeEEEecccceeecccccch
Q psy6014 38 HEVWLFSRYSTGWKCGLHADWT 59 (69)
Q Consensus 38 ~~~WLFSRySTGW~CGLHADwT 59 (69)
.++||-|+.| |-|=||.
T Consensus 58 ~QIWlaSp~s-----G~hfd~~ 74 (106)
T 1ew4_A 58 HQVWLATKQG-----GYHFDLK 74 (106)
T ss_dssp TEEEEECSSC-----EEEEEEE
T ss_pred hhheEecCCC-----ceeeeec
Confidence 4699999987 3566654
No 10
>1agg_A Omega-AGA-IVB, omega-agatoxin-IVB; neurotoxin, P-type calcium channel antagonist; NMR {Agelenopsis aperta} SCOP: g.3.6.2 PDB: 1oma_A 1omb_A 1iva_A 1oav_A 1oaw_A
Probab=14.96 E-value=84 Score=18.04 Aligned_cols=16 Identities=38% Similarity=0.997 Sum_probs=13.2
Q ss_pred CCCeecccCCeeeeec
Q psy6014 18 QRPCSCQRKKKRCYCF 33 (69)
Q Consensus 18 ~~pC~C~~~~krc~C~ 33 (69)
++||.|-...-.|.|.
T Consensus 22 ~RpC~Cs~~~tnC~Ck 37 (48)
T 1agg_A 22 GRPCRCSMIGTNCECT 37 (48)
T ss_dssp TBCEEECSSSSSEEEC
T ss_pred CCCeEEecCCCeeEee
Confidence 5788998888889995
Done!