Query psy6014
Match_columns 69
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 13730
Date Sat Aug 17 00:22:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6014.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6014hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i9wa3 g.74.1.1 (A:159-183) H 59.9 1.3 9.7E-05 21.8 0.7 16 15-30 3-20 (26)
2 d1eq2a_ c.2.1.2 (A:) ADP-L-gly 35.6 1.6 0.00012 26.0 -1.6 16 2-17 5-21 (307)
3 d1ozbi_ g.74.1.1 (I:) Preprote 22.0 16 0.0012 17.6 1.0 17 16-32 2-18 (26)
4 d1n7ha_ c.2.1.2 (A:) GDP-manno 21.6 3.6 0.00026 25.4 -2.0 14 2-15 7-21 (339)
5 d1qwda_ b.60.1.1 (A:) Outer me 18.8 28 0.0021 19.6 1.8 13 34-46 123-135 (167)
6 d2fqla1 d.82.2.1 (A:61-172) C- 18.5 25 0.0018 20.7 1.5 13 35-47 65-77 (112)
7 d2q46a1 c.2.1.2 (A:2-253) Hypo 17.0 5.8 0.00043 22.1 -1.6 15 2-16 9-24 (252)
8 d1zc3b1 b.55.1.1 (B:171-279) E 16.6 11 0.00077 20.4 -0.5 12 8-19 1-12 (109)
9 d1qyda_ c.2.1.2 (A:) Pinoresin 16.4 6.4 0.00046 23.3 -1.6 15 2-16 9-24 (312)
10 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 15.9 5.8 0.00042 25.0 -2.0 14 2-15 8-22 (346)
No 1
>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=59.95 E-value=1.3 Score=21.81 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=11.6
Q ss_pred CCCCCCeecccC--Ceee
Q psy6014 15 LDLQRPCSCQRK--KKRC 30 (69)
Q Consensus 15 l~l~~pC~C~~~--~krc 30 (69)
+...+||.|-.+ .|||
T Consensus 3 ~tqkqpcicgsgekfkrc 20 (26)
T d2i9wa3 3 VTQKQPCICGSGEKFKRC 20 (26)
T ss_dssp CCTTSBCTTSCSSBGGGT
T ss_pred ccccCCeeecCchHHHhh
Confidence 456789999875 4566
No 2
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=35.59 E-value=1.6 Score=26.04 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.1
Q ss_pred Ccccee-cceecccCCC
Q psy6014 2 GNSTSF-GRHLVSDLDL 17 (69)
Q Consensus 2 tgGTtf-grhLV~~l~l 17 (69)
||||=| |+|||+.|.-
T Consensus 5 TGgsGfIGs~lv~~L~~ 21 (307)
T d1eq2a_ 5 TGGAGFIGSNIVKALND 21 (307)
T ss_dssp ETTTSHHHHHHHHHHHT
T ss_pred ecCccHHHHHHHHHHHh
Confidence 889876 9999988764
No 3
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=22.02 E-value=16 Score=17.62 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=11.7
Q ss_pred CCCCCeecccCCeeeee
Q psy6014 16 DLQRPCSCQRKKKRCYC 32 (69)
Q Consensus 16 ~l~~pC~C~~~~krc~C 32 (69)
..+.||.|..++|-=.|
T Consensus 2 gRN~~CpCgSgkkyK~C 18 (26)
T d1ozbi_ 2 GRNEPCPCGSGKKYKHC 18 (26)
T ss_dssp CTTSBCTTTCSSBGGGT
T ss_pred CCCCcCCCCCCccHHHc
Confidence 34679999887774444
No 4
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.58 E-value=3.6 Score=25.40 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=10.9
Q ss_pred Ccccee-cceecccC
Q psy6014 2 GNSTSF-GRHLVSDL 15 (69)
Q Consensus 2 tgGTtf-grhLV~~l 15 (69)
||||=| |+|||+.|
T Consensus 7 TGatGfiG~~lv~~L 21 (339)
T d1n7ha_ 7 TGITGQDGSYLTEFL 21 (339)
T ss_dssp ETTTSHHHHHHHHHH
T ss_pred eCCccHHHHHHHHHH
Confidence 677754 99998887
No 5
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]}
Probab=18.79 E-value=28 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.6
Q ss_pred CCCCCceeEEEec
Q psy6014 34 RPNRHEVWLFSRY 46 (69)
Q Consensus 34 RP~~~~~WLFSRy 46 (69)
.|+.+-.||+||=
T Consensus 123 ~~~~~~~wIlsR~ 135 (167)
T d1qwda_ 123 GPDRDYLWILSRT 135 (167)
T ss_dssp CSSTTCEEEEESS
T ss_pred ecCCceEEEEEcC
Confidence 3456679999994
No 6
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.52 E-value=25 Score=20.71 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.1
Q ss_pred CCCCceeEEEecc
Q psy6014 35 PNRHEVWLFSRYS 47 (69)
Q Consensus 35 P~~~~~WLFSRyS 47 (69)
|...++||.|+.|
T Consensus 65 ~p~~QIWlaSp~s 77 (112)
T d2fqla1 65 PPNKQIWLASPLS 77 (112)
T ss_dssp CSSSSEEEEETTT
T ss_pred CchhheeEecCCC
Confidence 4456799999987
No 7
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.97 E-value=5.8 Score=22.08 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=11.4
Q ss_pred Cccc-eecceecccCC
Q psy6014 2 GNST-SFGRHLVSDLD 16 (69)
Q Consensus 2 tgGT-tfgrhLV~~l~ 16 (69)
|||| -+|++||+.|.
T Consensus 9 tGatG~iG~~l~~~Ll 24 (252)
T d2q46a1 9 TGASGRTGQIVYKKLK 24 (252)
T ss_dssp ESTTSTTHHHHHHHHH
T ss_pred ECCccHHHHHHHHHHH
Confidence 6776 56999988874
No 8
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.59 E-value=11 Score=20.45 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=9.3
Q ss_pred cceecccCCCCC
Q psy6014 8 GRHLVSDLDLQR 19 (69)
Q Consensus 8 grhLV~~l~l~~ 19 (69)
||+||++.++..
T Consensus 1 GR~li~eG~l~~ 12 (109)
T d1zc3b1 1 GQYLVYNGDLVE 12 (109)
T ss_dssp CCCEEEEEEEEE
T ss_pred CCEEEEeeeEEE
Confidence 788888877753
No 9
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}
Probab=16.44 E-value=6.4 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=11.2
Q ss_pred Cccc-eecceecccCC
Q psy6014 2 GNST-SFGRHLVSDLD 16 (69)
Q Consensus 2 tgGT-tfgrhLV~~l~ 16 (69)
|||| .+|++||+.|.
T Consensus 9 tGatG~iG~~l~~~L~ 24 (312)
T d1qyda_ 9 VGGTGYIGKRIVNASI 24 (312)
T ss_dssp ESTTSTTHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 6776 57998888753
No 10
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=15.94 E-value=5.8 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=10.6
Q ss_pred Cccce-ecceecccC
Q psy6014 2 GNSTS-FGRHLVSDL 15 (69)
Q Consensus 2 tgGTt-fgrhLV~~l 15 (69)
||||= +|+|||+.|
T Consensus 8 TGgtGfIGs~lv~~L 22 (346)
T d1oc2a_ 8 TGGAGFIGSNFVHYV 22 (346)
T ss_dssp ETTTSHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHH
Confidence 77775 488888877
Done!