RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6014
         (69 letters)



>gnl|CDD|217617 pfam03567, Sulfotransfer_2, Sulfotransferase family.  This family
          includes a variety of sulfotransferase enzymes.
          Chondroitin 6-sulfotransferase catalyzes the transfer
          of sulfate to position 6 of the N-acetylgalactosamine
          residue of chondroitin. This family also includes
          Heparan sulfate 2-O-sulfotransferase (HS2ST) and
          Heparan sulfate 6-sulfotransferase (HS6ST). Heparan
          sulfate (HS) is a co-receptor for a number of growth
          factors, morphogens, and adhesion proteins. HS
          biosynthetic modifications may determine the strength
          and outcome of HS-ligand interactions. Mice that lack
          HS2ST undergo developmental failure only after
          midgestation,the most dramatic effect being the
          complete failure of kidney development. Heparan
          sulphate 6- O -sulfotransferase (HS6ST) catalyzes the
          transfer of sulphate from adenosine 3'-phosphate,
          5'-phosphosulphate to the 6th position of the N
          -sulphoglucosamine residue in heparan sulphate.
          Length = 238

 Score = 43.9 bits (104), Expect = 6e-07
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 4  STSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSRYSTGWKCGLHADWTELTS 63
          STS+ R L     L         + +      + ++ W  S+ S GW  G   D +ELTS
Sbjct: 16 STSWKRILC---VLY-------GENKFLADNRSINDTWAHSKRSCGWSHGSFRDLSELTS 65

Query: 64 CV 65
          C 
Sbjct: 66 CE 67


>gnl|CDD|187832 cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10.
           CRISPR (Clustered Regularly Interspaced Short
           Palindromic Repeats) and associated Cas proteins
           comprise a system for heritable host defense by
           prokaryotic cells against phage and other foreign DNA;
           Multidomain protein with permuted HD nuclease domain,
           inactivated palm domain and Zn-ribbon; signature gene
           for type III.
          Length = 909

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 2   GNSTSFGRHLVSDLDLQRPCSCQRKKKRCYCF---RPNRHEVWLFSRYSTGW 50
            N  + G   V  L  Q P S   +K+RC      R +R + WL S   T W
Sbjct: 376 ENKENKGICPVCGLRPQGPTSKAEEKERCDICDERRTDRAKEWLHSLEETIW 427


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.135    0.494 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,213,100
Number of extensions: 204179
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)