RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6014
         (69 letters)



>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative,
          structural genomics, MI center for structural genomics
          (MCSG); 2.54A {Bacteroides thetaiotaomicron}
          Length = 103

 Score = 28.4 bits (63), Expect = 0.075
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 36 NRHEVWLFSRYSTGWKCGLHADWTELT 62
          N HEVW  +R   GW  G   D     
Sbjct: 37 NVHEVWAKARIDEGWTYGEKRDDIHKK 63


>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein,
           glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare}
           SCOP: c.1.8.3 PDB: 1ghr_A
          Length = 306

 Score = 28.2 bits (62), Expect = 0.15
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 25  RKKKRCYCFRPNRHEVWLFSRYSTGWKCG 53
               R     P   E ++F+ ++   K  
Sbjct: 257 NHVGRGTPRHPGAIETYIFAMFNENQKDS 285


>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
          1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
          3rqr_A
          Length = 210

 Score = 28.2 bits (62), Expect = 0.15
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 36 NRHEVWLFSRYSTGWKCGLHADWTELT 62
            HE W F +    W  G + D    T
Sbjct: 31 YTHEKWAFDKIQNNWMYGENVDEELKT 57



 Score = 26.6 bits (58), Expect = 0.51
 Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 5/32 (15%)

Query: 36  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 62
           N H  W   +       G   H     +  LT
Sbjct: 151 NYHNTWGRKKKQELEAKGGGTHPLLVPYDTLT 182


>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
          Length = 207

 Score = 28.2 bits (62), Expect = 0.17
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 36 NRHEVWLFSRYSTGWKCGLHADWTELTS 63
          + H+ W   +  +GWK G+  D    T 
Sbjct: 31 HSHDKWACDKSQSGWKYGISLDENVKTH 58



 Score = 27.8 bits (61), Expect = 0.19
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)

Query: 36  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 62
           N H +W   +       G   H     +  LT
Sbjct: 149 NYHNIWAKKKKLELESKGGGSHPLLVPYDTLT 180


>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport;
          1.65A {Mus musculus}
          Length = 209

 Score = 27.8 bits (61), Expect = 0.24
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 36 NRHEVWLFSRYSTGWKCGLHADWTELT 62
          + H+ W   + + GW  G     +   
Sbjct: 31 HSHDKWSMDKLANGWIYGEIYSDSSKI 57



 Score = 27.0 bits (59), Expect = 0.43
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)

Query: 36  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 62
           N H +W   +       G   H     +  LT
Sbjct: 151 NYHNIWAKKKKLELESKGGGNHPLLVPYDTLT 182


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.135    0.494 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,040,956
Number of extensions: 42756
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 9
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)