BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6016
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI+E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 73 QTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 132
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 133 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 182
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 80/110 (72%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 73 QTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 132
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 133 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 182
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 80/110 (72%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 54 QTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 113
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 114 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 163
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 80/110 (72%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 54 QTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 113
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 114 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 163
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 26 CSQELGL-NITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84
+ELGL +T+D I+E K N D +EE+ +HDV AH H + + C A+ IIH
Sbjct: 44 AEKELGLKQVTQDAIDEXKSNRDVFDWPFIRSEERKLKHDVXAHNHAFGKLCPTAAGIIH 103
Query: 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
LGATSC+V DN DLI RD+ D ++ + AT I LA F+ K K++ T+G TH
Sbjct: 104 LGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTH 155
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ELG+ I + E +++N K+D++ E+ T HDV+A V + S H G
Sbjct: 34 EELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGL 91
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D + + + +A IL+ L L AN++K PT+G TH
Sbjct: 92 TSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTH 140
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ELG+ I + E +++N K+D++ E+ T HDV+A V + S H G
Sbjct: 35 EELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGL 92
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D + + + +A IL+ L L AN++K PT+G TH
Sbjct: 93 TSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTH 141
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 22 SILFCSQ--ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG+ I ++ ++ +++N D++R EK TRHDV+A +E +
Sbjct: 27 EILACEAWAELGV-IPKEDVKVMRENA-SFDINRILEIEKDTRHDVVAFTRAVSESLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D ++ A DIL+ L + + A + K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTH 141
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 52 DRAAAEEKLTRHDVMAHVHVYAEQ-CRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIP 110
+R EK+T+HD++A AEQ + H G TS + D+ +QIRD+ +I
Sbjct: 56 ERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIK 115
Query: 111 KLATCISHLAFFANKFKDLPTLGFTH 136
L L A + K++ T+G +H
Sbjct: 116 DLEALCDSLLTKAEETKEIITMGRSH 141
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 42.7 bits (99), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 23 ILFCSQ--ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQ--CRK 78
IL C ELG +I ++ +++++++ D+DR EK TRHDV+A +E +
Sbjct: 37 ILACEAWAELG-DIPKEDVKKIREHA-SFDIDRIYEIEKETRHDVVAFTRAVSETPALGE 94
Query: 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D ++ A +I++ L +S LA A + K +G TH
Sbjct: 95 ERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTH 152
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%)
Query: 50 DLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
+++R + ++ + ++ V + +A +H GAT+ + D ++QIRD ++
Sbjct: 65 EMERLRDDTEIVGYPILPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALIS 124
Query: 110 PKLATCISHLAFFANKFKDLPTLGFTHL 137
++ + LA A +D P G THL
Sbjct: 125 RRIESVRKALAALARNHRDTPMAGRTHL 152
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 14 INKVIKVYSILFCS-QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVY 72
IN ++V L C+ +ELG+ R E K N + D E+ T HD+++ V +
Sbjct: 25 INAYLEVERALVCALEELGV-AERGCCE--KVNKASVSADEVYRLERETGHDILSLVLLL 81
Query: 73 AEQ--CRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLP 130
++ CR +H GATS + D + IR A + K LA A K+K L
Sbjct: 82 EQKSGCR----YVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLE 137
Query: 131 TLGFTH 136
+G TH
Sbjct: 138 MVGRTH 143
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 71 VYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLP 130
V A +A +HLGATS D ++Q+RDA D++ L L+ A K D P
Sbjct: 88 VIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTP 147
Query: 131 TLGFTHL 137
+G T L
Sbjct: 148 LVGRTWL 154
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 50 DLDRAAAEEKLTRHDVMAHVHVYAEQCRK------ASSIIHLGATSCYVGDNTDLIQIRD 103
D R E+ T HDV A + E+ + S IH TS + + + + ++
Sbjct: 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALXLKT 137
Query: 104 AFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
A D +++P I L A +++D+P L TH
Sbjct: 138 ARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTH 171
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 45 NMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRK------ASSIIHLGATSCYVGDNTDL 98
N + D R E+ T HDV A + E+ + S IH TS + + +
Sbjct: 99 NFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHA 158
Query: 99 IQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+ ++ A D +++P I + A +++D+P L TH
Sbjct: 159 LMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTH 197
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 55 AAEEKLTRHDVMAHVHVYAEQCRK--------ASSIIHLGATSCYVGDNTDLIQIRDAFD 106
AA+ RH V V E R+ A+ +H GATS V D + +++++ A +
Sbjct: 66 AADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAE 125
Query: 107 ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
I+ +L I L A++ P G+T +
Sbjct: 126 IIATRLGHLIDTLGDLASRDGHKPLTGYTRM 156
>pdb|3HR0|A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric
Golgi Subunit 4
pdb|3HR0|B Chain B, Crystal Structure Of Homo Sapiens Conserved Oligomeric
Golgi Subunit 4
Length = 263
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 111 KLATCISHLAFFANKFKDLPTLGFTHL 137
K +C+S LA +NKF+DL G T L
Sbjct: 63 KFDSCLSDLAAVSNKFRDLLQEGLTEL 89
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
A+ +H GATS + D ++Q RDA I+ ++ C A ++ +G T L
Sbjct: 100 AARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 158
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 18 IKVYSILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR 77
+KVYSI +E+ ++++K N++K + AAA E L H+ + + +
Sbjct: 66 VKVYSINNTPKEVVFQTLESNLKDMKCNVIKTGMLTAAAIEVL--HEKLLQLGENRPKLV 123
Query: 78 KASSIIHLGATSCYVGDNTDLI--QIRDAFDILIPKLATCISHLA 120
++ +S D LI ++ DIL P + C L
Sbjct: 124 VDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLG 168
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFA 123
H+HVY Q K ++ G D+ + R AF ++ ++A + FA
Sbjct: 268 HIHVYVSQAHKGELVMGAGI------DSYNGYGQRGAFHVIQEQMAAAVELFPIFA 317
>pdb|3ADA|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 399
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFA 123
H+HVY Q K ++ G D+ + R AF ++ ++A + FA
Sbjct: 262 HIHVYVSQAHKGELVMGAGI------DSYNGYGQRGAFHVIEEQMAAAVELFPIFA 311
>pdb|1VRQ|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
Length = 404
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFA 123
H+HVY Q K ++ G D+ + R AF ++ ++A + FA
Sbjct: 267 HIHVYVSQAHKGELVMGAGI------DSYNGYGQRGAFHVIEEQMAAAVELFPIFA 316
>pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
Length = 250
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 74 EQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDL 129
+Q K +I H+ AT+ V T+L I+D+ ++P TC L F +K ++
Sbjct: 21 QQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,927,674
Number of Sequences: 62578
Number of extensions: 141103
Number of successful extensions: 440
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 24
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)