BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6016
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3KN12|PUR8_BOVIN Adenylosuccinate lyase OS=Bos taurus GN=ADSL PE=2 SV=1
Length = 490
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 85/110 (77%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI+E+K N+ +D AA EEK RHDVMAHVH +A C KA+SIIHLGA
Sbjct: 57 QTLGLPITDEQIQEMKSNLDNIDFRMAAEEEKQLRHDVMAHVHTFAHCCPKAASIIHLGA 116
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+AFD+L+PKLA IS LA FA + DLPTLGFTH
Sbjct: 117 TSCYVGDNTDLIILRNAFDLLLPKLARVISRLADFAKEQADLPTLGFTHF 166
>sp|P54822|PUR8_MOUSE Adenylosuccinate lyase OS=Mus musculus GN=Adsl PE=2 SV=2
Length = 484
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 82/110 (74%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI+E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 51 QTLGLPITDEQIQEMKSNLNNIDFQMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 110
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+AFD+L+PKLA IS LA FA DLPTLGFTH
Sbjct: 111 TSCYVGDNTDLIILRNAFDLLLPKLARVISRLADFAKDRADLPTLGFTHF 160
>sp|P21265|PUR8_CHICK Adenylosuccinate lyase OS=Gallus gallus GN=ADSL PE=2 SV=2
Length = 485
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 83/109 (76%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ LGL IT +QI+E++ N+ +D AA EEK RHDVMAHVH +A C KA++IIHLGA
Sbjct: 52 KSLGLPITDEQIKEMEANLDNIDFKMAAEEEKKLRHDVMAHVHTFAHCCPKAAAIIHLGA 111
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TSCYVGDNTDLI +RD F++L+PKLA IS LA FA DLPTLGFTH
Sbjct: 112 TSCYVGDNTDLIVLRDGFNLLLPKLARVISRLADFAETHADLPTLGFTH 160
>sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2
Length = 484
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI+E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 51 QTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 110
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 111 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 160
>sp|Q8HXY5|PUR8_MACFA Adenylosuccinate lyase OS=Macaca fascicularis GN=ADSL PE=2 SV=1
Length = 484
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI+E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 51 QTLGLPITDEQIQEMKSNLDNIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 110
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 111 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 160
>sp|Q05911|PUR8_YEAST Adenylosuccinate lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADE13 PE=1 SV=1
Length = 482
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 85/119 (71%), Gaps = 3/119 (2%)
Query: 22 SILFCSQELGLNITRDQ-IEELKDNMMKLD--LDRAAAEEKLTRHDVMAHVHVYAEQCRK 78
++ +ELGL + D+ IE+++ ++ D + +A+A+E + RHDVMAHVH + E C
Sbjct: 39 NLAIAEKELGLTVVTDEAIEQMRKHVEITDDEIAKASAQEAIVRHDVMAHVHTFGETCPA 98
Query: 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
A+ IIHLGATSC+V DN DLI IRDA+DI+IPKL I+ LA FA ++KDLP LG+TH
Sbjct: 99 AAGIIHLGATSCFVTDNADLIFIRDAYDIIIPKLVNVINRLAKFAMEYKDLPVLGWTHF 157
>sp|O60105|PUR8_SCHPO Adenylosuccinate lyase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ade8 PE=3 SV=1
Length = 482
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 86/128 (67%), Gaps = 4/128 (3%)
Query: 13 RINKVIKVY-SILFCSQELGL-NITRDQIEELKDN--MMKLDLDRAAAEEKLTRHDVMAH 68
RIN +++ ++ ++LGL IT + IE+LK + + + + AA EEK RHDVMAH
Sbjct: 29 RINTWRQLWLNLAIAEKQLGLTQITDEAIEQLKAHVKITAPEFEIAAKEEKRQRHDVMAH 88
Query: 69 VHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128
++ Y AS IIHLGATSC+V DN DLI +R A D+LIPKL I+ L+ ++ ++KD
Sbjct: 89 IYTYGLAAPAASGIIHLGATSCFVTDNADLIFLRSAMDLLIPKLVNVINRLSQWSLRYKD 148
Query: 129 LPTLGFTH 136
+PTLGFTH
Sbjct: 149 IPTLGFTH 156
>sp|Q21774|PUR8_CAEEL Adenylosuccinate lyase OS=Caenorhabditis elegans GN=R06C7.5 PE=1
SV=1
Length = 478
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 26 CSQELGL-NITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84
+ELGL +T+D I+E+K N D +EE+ +HDVMAH H + + C A+ IIH
Sbjct: 44 AEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIH 103
Query: 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
LGATSC+V DN DLI RD+ D ++ + AT I LA F+ K K++ T+G TH
Sbjct: 104 LGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTH 155
>sp|Q60Q90|PUR8_CAEBR Adenylosuccinate lyase OS=Caenorhabditis briggsae GN=CBG21917 PE=3
SV=1
Length = 478
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 26 CSQELGL-NITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84
+ELGL +T++ I+E+K D AEE+ +HDVMAH H + + C A+ IIH
Sbjct: 44 AEKELGLKQVTQEAIDEMKSQRDNFDWSFIRAEERKLKHDVMAHNHAFGKICPTAAGIIH 103
Query: 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
LGATSCYV DN DLI RD+ D ++ + AT I LA F+ K++ T+G TH
Sbjct: 104 LGATSCYVQDNADLIAYRDSIDHILKRFATVIDRLAQFSLNNKEVVTVGRTH 155
>sp|Q58339|PUR8_METJA Adenylosuccinate lyase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=purB PE=3 SV=1
Length = 462
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 13 RINKVIKVYSILFCSQ-ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHV 69
++ K++KV + L +Q ELGL I ++ EE+ K + + L+R EK T+HDV+A +
Sbjct: 36 KLEKMLKVEAALAKAQAELGL-IPKEAAEEINKKASTKYVKLERVKEIEKQTKHDVVAMI 94
Query: 70 HVYAEQCR-KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128
AE C A IH GATS + D + + I+++ +I+ KL L A + K
Sbjct: 95 RALAEVCEGNAGEYIHFGATSNDIVDTANSLLIKESIEIIEDKLKQLRDILLDKAEEHKY 154
Query: 129 LPTLGFTH 136
+G TH
Sbjct: 155 TVCVGRTH 162
>sp|O27580|PUR8_METTH Adenylosuccinate lyase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=purB PE=3 SV=1
Length = 449
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 51 LDRAAAEEKLTRHDVMAHVHVYAEQCR-KASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
L+R E+ T+HD+ + V AEQC A +H GATS + D ++ + +RD+ +L
Sbjct: 64 LERVNEIERDTKHDIASLVKALAEQCEGDAGEYVHFGATSNDIVDTSNSLLLRDSISVLR 123
Query: 110 PKLATCISHLAFFANKFKDLPTLGFTH 136
KL + L A++ +D +G TH
Sbjct: 124 DKLTRVLEVLLALADENRDRVCIGRTH 150
>sp|Q9X0I0|PUR8_THEMA Adenylosuccinate lyase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=purB PE=1 SV=1
Length = 431
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ELG+ I + E +++N K+D++ E+ T HDV+A V + S H G
Sbjct: 35 EELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGL 92
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D + + + +A IL+ L L AN++K PT+G TH
Sbjct: 93 TSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTH 141
>sp|O66856|PUR8_AQUAE Adenylosuccinate lyase OS=Aquifex aeolicus (strain VF5) GN=purB
PE=3 SV=1
Length = 437
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 63 HDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFF 122
HDV+A V V AEQ + IH+G TS V D + IR+A DI++ + + +
Sbjct: 71 HDVLAFVSVIAEQVGEEGRYIHMGLTSSDVVDTALALLIREAIDIILKDIDKVMEEIKRL 130
Query: 123 ANKFKDLPTLGFTH 136
A + KD +G TH
Sbjct: 131 AFEHKDTLMMGRTH 144
>sp|Q8CRT6|PUR8_STAES Adenylosuccinate lyase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=purB PE=3 SV=1
Length = 431
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 23 ILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKAS 80
IL C ELG I ++ ++++++N K++++RA E+ TRHDV+A +E
Sbjct: 28 ILACEAWSELGY-IPKEDVKKIRENA-KVNVERAKEIEQETRHDVVAFTRQVSETLGDER 85
Query: 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A +IL L I LA A K++ +G TH
Sbjct: 86 KWVHYGLTSTDVVDTALSYVIKQANEILEKDLERFIDVLAAKAKKYQYTLMMGRTH 141
>sp|Q5HN26|PUR8_STAEQ Adenylosuccinate lyase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=purB PE=3 SV=1
Length = 431
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 23 ILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKAS 80
IL C ELG I ++ ++++++N K++++RA E+ TRHDV+A +E
Sbjct: 28 ILACEAWSELGY-IPKEDVKKIRENA-KVNVERAKEIEQETRHDVVAFTRQVSETLGDER 85
Query: 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A +IL L I LA A K++ +G TH
Sbjct: 86 KWVHYGLTSTDVVDTALSYVIKQANEILEKDLERFIDVLAAKAKKYQYTLMMGRTH 141
>sp|Q7A0G9|PUR8_STAAW Adenylosuccinate lyase OS=Staphylococcus aureus (strain MW2)
GN=purB PE=1 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q6G825|PUR8_STAAS Adenylosuccinate lyase OS=Staphylococcus aureus (strain MSSA476)
GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q6GFE9|PUR8_STAAR Adenylosuccinate lyase OS=Staphylococcus aureus (strain MRSA252)
GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q7A4Q3|PUR8_STAAN Adenylosuccinate lyase OS=Staphylococcus aureus (strain N315)
GN=purB PE=1 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q99SX9|PUR8_STAAM Adenylosuccinate lyase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=purB PE=1 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q5HEL4|PUR8_STAAC Adenylosuccinate lyase OS=Staphylococcus aureus (strain COL)
GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q2YU66|PUR8_STAAB Adenylosuccinate lyase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q2G2S0|PUR8_STAA8 Adenylosuccinate lyase OS=Staphylococcus aureus (strain NCTC 8325)
GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q2FFI7|PUR8_STAA3 Adenylosuccinate lyase OS=Staphylococcus aureus (strain USA300)
GN=purB PE=3 SV=1
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I + +++++ N K++++RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSELG-HIPKADVQKIRQNA-KVNVERAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A DI+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTH 141
>sp|Q9UZ99|PUR8_PYRAB Adenylosuccinate lyase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=purB PE=3 SV=1
Length = 450
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%)
Query: 43 KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIR 102
+ N + L+R E HD+MA V +E C + +HLGATS + D + + I+
Sbjct: 56 RANTKWVKLERVKEIEAEIHHDIMAVVKALSEVCGEHGKYVHLGATSNDIIDTANALLIK 115
Query: 103 DAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
++ I+ L S L A K D +G TH
Sbjct: 116 ESLAIVEKDLKELRSILKELAKKHIDTVCIGRTH 149
>sp|O28041|PUR8_ARCFU Adenylosuccinate lyase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=purB
PE=3 SV=1
Length = 444
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 DRAAAEEKLTRHDVMAHVHVYAEQ--CRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
+R E +HD+MA V E CR +H GATS + D +Q+RD+ IL
Sbjct: 63 ERVKEIEAEIKHDIMALVKAITEATGCR----WVHFGATSNDIIDTATALQLRDSLKILE 118
Query: 110 PKLATCISHLAFFANKFKDLPTLGFTH 136
K+ LA A ++KD+ LG TH
Sbjct: 119 VKIKRLAKVLADKALEYKDVVCLGRTH 145
>sp|Q49YV3|PUR8_STAS1 Adenylosuccinate lyase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=purB
PE=3 SV=1
Length = 431
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C +LG +I + ++++++N K+D+ RA E+ TRHDV+A +E +
Sbjct: 27 EILACEAWSKLG-DIPAEDVKKIRENA-KVDVARAQEIEQETRHDVVAFTRQVSETLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A +I+ L I LA A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSYVIKQANEIIKKDLERFIDVLAQKAKDYKYTLMMGRTH 141
>sp|Q4L7M3|PUR8_STAHJ Adenylosuccinate lyase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=purB PE=3 SV=1
Length = 431
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 22 SILFCS--QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG +I ++ +++++ N K+D+ RA E+ TRHDV+A +E
Sbjct: 27 EILACEAWSELG-HIPKEDVKKIRQNA-KVDVKRAQEIEQETRHDVVAFTRQVSETLGDE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D I+ A +I+ + I L A +K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSYVIKQANEIIEKDIERFIKVLEEKAKNYKYTLMMGRTH 141
>sp|P12047|PUR8_BACSU Adenylosuccinate lyase OS=Bacillus subtilis (strain 168) GN=purB
PE=1 SV=1
Length = 431
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 22 SILFCSQ--ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
IL C ELG+ I ++ ++ +++N D++R EK TRHDV+A +E +
Sbjct: 27 EILACEAWAELGV-IPKEDVKVMRENA-SFDINRILEIEKDTRHDVVAFTRAVSESLGEE 84
Query: 80 SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+H G TS V D ++ A DIL+ L + + A + K +G TH
Sbjct: 85 RKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTH 141
>sp|O58582|PUR8_PYRHO Adenylosuccinate lyase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=purB
PE=3 SV=1
Length = 450
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 43 KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIR 102
+ N + L+R E HD+MA V +E C + +HLGATS + D + + I+
Sbjct: 56 RANTKWVKLERVKEIEAEIHHDIMAVVKALSEVCGEHGKYVHLGATSNDIIDTANALLIK 115
Query: 103 DAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
++ +I+ L S L A K +G TH
Sbjct: 116 ESLEIVERDLKELRSILKQLAEKHIGTVCIGRTH 149
>sp|P74384|PUR8_SYNY3 Adenylosuccinate lyase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=purB PE=3 SV=1
Length = 431
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG I + ++E+K K D R E RHDV+A + E A IHLG T
Sbjct: 36 ELGY-IPQAAVDEIKAKA-KFDPQRVLEIEAEVRHDVIAFLTNVNEYVGDAGRYIHLGLT 93
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D +Q+ + D+++ +L I + + A + + +G +H
Sbjct: 94 SSDVLDTALALQLVASLDLILEQLEKLIQAIRYQAQQHRYTVMVGRSH 141
>sp|Q9RSE6|PUR8_DEIRA Adenylosuccinate lyase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=purB PE=3 SV=1
Length = 435
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 51 LDRAAAE-----EKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAF 105
LD A A+ E +TRHD++A E+ + + IH G TS V D + + +A
Sbjct: 57 LDDAFAQQVAEIEAVTRHDIVAFTRALTERYGEEARFIHHGLTSTDVVDTAQNLLLDEAM 116
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTH 136
++I + T A K P +G TH
Sbjct: 117 GLIITDVQTLREVCRMQAAAHKHTPVVGRTH 147
>sp|Q492L1|SYD_BLOPB Aspartate--tRNA ligase OS=Blochmannia pennsylvanicus (strain BPEN)
GN=aspS PE=3 SV=1
Length = 574
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 11 SGRINKVIKVYSILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKL-TRHDVMAHV 69
+G + V K +SIL S L L+I+++ IEE + LDL R+ +++ TR +M+ V
Sbjct: 90 TGAVEVVAKKFSILNISDPLPLDISKNNIEENRLKYRYLDLRRSIMFDRIKTRSRIMSIV 149
Query: 70 HVYAE 74
H + E
Sbjct: 150 HRFME 154
>sp|P32427|PCAB_PSEPU 3-carboxy-cis,cis-muconate cycloisomerase (Fragment) OS=Pseudomonas
putida GN=pcaB PE=1 SV=3
Length = 422
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 71 VYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLP 130
V A +A +HLGATS D ++Q+RDA D++ L L+ A K D P
Sbjct: 88 VIASGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTP 147
Query: 131 TLGFTHL 137
+G T L
Sbjct: 148 MVGRTWL 154
>sp|P72478|PUR8_STRMU Adenylosuccinate lyase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=purB PE=3 SV=2
Length = 432
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG I ++ + ++++ D+DR E+ TRHDV+A +E + +H G T
Sbjct: 36 ELG-EIPKEDVAKIREKA-DFDIDRILEIEQQTRHDVVAFTRAVSETLGEERKWVHFGLT 93
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D + A I+ L +S +A A + K +G TH
Sbjct: 94 STDVVDTAYGYLYKQANAIIRKDLDNFLSIIADKAKEHKFTIMMGRTH 141
>sp|Q9I0K9|PUR8_PSEAE Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1
Length = 456
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 58 EKLTRHDVMAHVHVYAEQCRK------ASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIP 110
E+ T HDV A ++ EQ K S IH TS + + + + +R+ D +L+P
Sbjct: 86 ERTTNHDVKAVEYLLKEQAAKLPELAAVSEFIHFACTSEDINNLSHALMLREGRDSVLLP 145
Query: 111 KLATCISHLAFFANKFKDLPTLGFTH 136
+ + A K D+P L TH
Sbjct: 146 LMRQIAEAIRELAVKLADVPMLSRTH 171
>sp|P57351|PUR8_BUCAI Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=purB PE=3 SV=1
Length = 456
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 58 EKLTRHDVMAHVHVYAEQCRKA------SSIIHLGATSCYVGDNTDLIQIRDAFD-ILIP 110
EK T HD+ A + + ++ S +H G TS + + + I+DA D I++P
Sbjct: 86 EKETNHDIKALEYFLKNKIAQSKNLLTISEFVHFGCTSEDINNIAYSLMIKDARDKIILP 145
Query: 111 KLATCISHLAFFANKFKDLPTLGFTH 136
IS L K++ P L TH
Sbjct: 146 LWYKIISTLKKMVFKYQHYPLLSLTH 171
>sp|P0AB89|PUR8_ECOLI Adenylosuccinate lyase OS=Escherichia coli (strain K12) GN=purB
PE=1 SV=1
Length = 456
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 50 DLDRAAAEEKLTRHDVMAHVHVYAEQCRK------ASSIIHLGATSCYVGDNTDLIQIRD 103
D R E+ T HDV A + E+ + S IH TS + + + + ++
Sbjct: 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKT 137
Query: 104 AFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
A D +++P I + A +++D+P L TH
Sbjct: 138 ARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTH 171
>sp|P0AB90|PUR8_ECOL6 Adenylosuccinate lyase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=purB PE=3 SV=1
Length = 456
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 50 DLDRAAAEEKLTRHDVMAHVHVYAEQCRK------ASSIIHLGATSCYVGDNTDLIQIRD 103
D R E+ T HDV A + E+ + S IH TS + + + + ++
Sbjct: 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKT 137
Query: 104 AFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
A D +++P I + A +++D+P L TH
Sbjct: 138 ARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTH 171
>sp|Q9Y7T4|ATG1_SCHPO Serine/threonine-protein kinase atg1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=atg1 PE=1 SV=1
Length = 830
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 68 HVHVYAE-QCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLA 113
HVHV C KA IHL C +GD + I+ R+ F+ IP LA
Sbjct: 70 HVHVVELIDCIKAGRFIHLVMEYCSLGDLSYFIRKREKFNS-IPSLA 115
>sp|Q3UIL6|PKHA7_MOUSE Pleckstrin homology domain-containing family A member 7 OS=Mus
musculus GN=Plekha7 PE=1 SV=2
Length = 1118
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 22/84 (26%)
Query: 18 IKVYSILFCSQELGLNITRDQIEELKDNMMKLD-------------------LDRAAAEE 58
I V +FC Q+ L D+I LK+N +L+ L++ ++
Sbjct: 688 IDVKLSIFCEQDRILQDLEDKIRALKENKDQLESVLEVLHRQTEQYRDQPQHLEKITCQQ 747
Query: 59 KLTRHDVMAHVHVYAEQCRKASSI 82
+L + D+ VH+ AE CR+++ +
Sbjct: 748 RLLQEDL---VHIRAELCRESTEM 768
>sp|A6U852|RPOC_SINMW DNA-directed RNA polymerase subunit beta' OS=Sinorhizobium medicae
(strain WSM419) GN=rpoC PE=3 SV=1
Length = 1401
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G ++ VGDN D I++ D D LI
Sbjct: 1246 HIEVIVRQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDSLI 1287
>sp|Q7VQX8|SYD_BLOFL Aspartate--tRNA ligase OS=Blochmannia floridanus GN=aspS PE=3 SV=1
Length = 576
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 11 SGRINKVIKVYSILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKL-TRHDVMAHV 69
+G I K + +L S L L+I +D IEE + LDL R + TR VMA
Sbjct: 90 TGFIEIEAKFFLVLNVSNPLPLDIHQDNIEENRLKYRYLDLRRPIMFHNIQTRSRVMALT 149
Query: 70 HVYAE 74
H + E
Sbjct: 150 HRFME 154
>sp|Q6CB30|RTC5_YARLI Restriction of telomere capping protein 5 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=RTC5 PE=3 SV=1
Length = 567
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 71 VYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHL 119
+YA+ CRK++ I + +C + DL+Q R AFD + P L + HL
Sbjct: 218 LYAD-CRKSAQCI---SRAC--NGDIDLVQFRHAFDKVCPHLLAPVGHL 260
>sp|B3PW60|RPOC_RHIE6 DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CIAT 652) GN=rpoC PE=3 SV=1
Length = 1402
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G ++ VGDN D I++ D D LI
Sbjct: 1247 HIEVIVRQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDHLI 1288
>sp|Q2K9M3|RPOC_RHIEC DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=rpoC PE=3 SV=1
Length = 1402
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G ++ VGDN D I++ D D LI
Sbjct: 1247 HIEVIVRQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDHLI 1288
>sp|Q1MIE8|RPOC_RHIL3 DNA-directed RNA polymerase subunit beta' OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=rpoC PE=3 SV=1
Length = 1402
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G ++ VGDN D I++ D D LI
Sbjct: 1247 HIEVIVRQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDHLI 1288
>sp|P56468|PUR8_HELPY Adenylosuccinate lyase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=purB PE=3 SV=1
Length = 440
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 49 LDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDIL 108
+L+R EK T+HD++A AE + S H G TS D + + + ++
Sbjct: 54 FNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLI 113
Query: 109 IPKLATCISHLAFFANKFKDLPTLGFTH 136
+ L A + KD +G +H
Sbjct: 114 QKGVKNLYETLKNRALEHKDTLMVGRSH 141
>sp|Q92QH6|RPOC_RHIME DNA-directed RNA polymerase subunit beta' OS=Rhizobium meliloti
(strain 1021) GN=rpoC PE=3 SV=1
Length = 1401
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G ++ VGDN D I++ D D L+
Sbjct: 1246 HIEVIVRQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDSLL 1287
>sp|Q8UE09|RPOC_AGRT5 DNA-directed RNA polymerase subunit beta' OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoC PE=3 SV=2
Length = 1402
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILI 109
H+ V Q + I G + VGDN D I++ D D LI
Sbjct: 1247 HIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRLI 1288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,314,515
Number of Sequences: 539616
Number of extensions: 1826525
Number of successful extensions: 7207
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7153
Number of HSP's gapped (non-prelim): 66
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)