Query psy6016
Match_columns 137
No_of_seqs 169 out of 1192
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:24:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0015 PurB Adenylosuccinate 100.0 1.2E-36 2.5E-41 249.7 15.9 131 6-137 12-146 (438)
2 PRK07492 adenylosuccinate lyas 100.0 3.6E-36 7.8E-41 248.5 15.5 131 6-137 12-145 (435)
3 PRK07380 adenylosuccinate lyas 100.0 3.3E-36 7.2E-41 248.4 15.0 130 6-137 12-142 (431)
4 PRK08470 adenylosuccinate lyas 100.0 1E-35 2.2E-40 246.2 15.0 130 6-137 12-142 (442)
5 cd03302 Adenylsuccinate_lyase_ 100.0 8.9E-35 1.9E-39 240.3 15.4 132 6-137 12-144 (436)
6 cd01360 Adenylsuccinate_lyase_ 100.0 1.1E-34 2.4E-39 236.7 14.9 130 6-137 9-139 (387)
7 cd01595 Adenylsuccinate_lyase_ 100.0 1.1E-34 2.3E-39 236.3 14.7 131 6-137 3-137 (381)
8 PRK06390 adenylosuccinate lyas 100.0 2.3E-34 4.9E-39 238.7 15.3 131 6-137 17-150 (451)
9 PRK08540 adenylosuccinate lyas 100.0 4.1E-34 8.9E-39 237.1 15.4 131 6-137 17-151 (449)
10 cd01598 PurB PurB_like adenylo 100.0 3.6E-34 7.8E-39 235.8 14.5 131 6-137 3-150 (425)
11 PRK05975 3-carboxy-cis,cis-muc 100.0 9.7E-34 2.1E-38 228.6 15.8 131 6-137 22-156 (351)
12 TIGR02426 protocat_pcaB 3-carb 100.0 2.6E-33 5.6E-38 225.2 15.9 131 6-137 13-147 (338)
13 TIGR00928 purB adenylosuccinat 100.0 1.9E-33 4E-38 232.4 14.8 131 6-137 12-145 (435)
14 cd01597 pCLME prokaryotic 3-ca 100.0 5E-33 1.1E-37 229.9 15.5 132 5-137 12-147 (437)
15 PRK09053 3-carboxy-cis,cis-muc 100.0 1.1E-32 2.3E-37 228.8 15.8 131 6-137 19-156 (452)
16 PLN02848 adenylosuccinate lyas 100.0 7.7E-33 1.7E-37 229.7 14.8 131 6-137 28-175 (458)
17 PRK09285 adenylosuccinate lyas 100.0 4.3E-32 9.4E-37 225.2 14.9 133 5-137 24-172 (456)
18 PRK06705 argininosuccinate lya 100.0 2.6E-30 5.7E-35 216.8 13.1 128 7-137 31-164 (502)
19 cd01334 Lyase_I Lyase class I 100.0 1.6E-30 3.5E-35 207.7 10.3 123 14-137 1-128 (325)
20 cd01359 Argininosuccinate_lyas 100.0 1.5E-29 3.3E-34 209.0 10.8 127 9-137 4-135 (435)
21 PF00206 Lyase_1: Lyase; Inte 100.0 3.5E-29 7.6E-34 199.1 10.2 130 7-137 13-160 (312)
22 PRK02186 argininosuccinate lya 100.0 4.7E-29 1E-33 220.7 11.7 126 10-137 434-564 (887)
23 cd01357 Aspartase Aspartase. T 100.0 1.8E-28 3.9E-33 203.5 13.2 126 9-137 36-184 (450)
24 PRK12308 bifunctional arginino 100.0 6.3E-29 1.4E-33 212.8 10.1 128 7-137 18-157 (614)
25 PRK04833 argininosuccinate lya 100.0 1.3E-28 2.7E-33 204.6 11.6 130 7-137 18-157 (455)
26 TIGR00839 aspA aspartate ammon 100.0 5.2E-28 1.1E-32 201.4 12.9 130 5-137 34-187 (468)
27 PRK12273 aspA aspartate ammoni 100.0 5.5E-28 1.2E-32 201.6 12.9 125 10-137 44-191 (472)
28 PRK13353 aspartate ammonia-lya 100.0 9.9E-28 2.1E-32 200.1 12.5 125 10-137 42-189 (473)
29 PRK00485 fumC fumarate hydrata 99.9 2E-27 4.2E-32 197.9 12.1 125 10-137 41-189 (464)
30 COG0165 ArgH Argininosuccinate 99.9 3.4E-27 7.4E-32 194.0 12.5 114 22-137 41-158 (459)
31 cd01362 Fumarase_classII Class 99.9 5.5E-27 1.2E-31 194.8 11.9 125 10-137 37-185 (455)
32 TIGR00979 fumC_II fumarate hyd 99.9 9.1E-27 2E-31 193.6 11.5 124 11-137 39-186 (458)
33 TIGR00838 argH argininosuccina 99.9 1.6E-26 3.5E-31 192.0 11.7 127 10-137 24-155 (455)
34 PLN02646 argininosuccinate lya 99.9 1.1E-26 2.4E-31 193.8 10.7 119 18-137 49-171 (474)
35 PRK00855 argininosuccinate lya 99.9 6.9E-26 1.5E-30 188.5 12.5 126 11-137 30-159 (459)
36 cd01596 Aspartase_like asparta 99.9 2.5E-25 5.5E-30 184.7 12.1 127 10-137 37-184 (450)
37 PRK12425 fumarate hydratase; P 99.9 1.8E-24 3.9E-29 180.1 11.2 126 11-137 40-187 (464)
38 PRK06389 argininosuccinate lya 99.9 1.8E-24 3.9E-29 178.3 10.4 114 18-137 36-151 (434)
39 PLN00134 fumarate hydratase; P 99.9 7E-24 1.5E-28 176.4 12.2 126 11-137 34-181 (458)
40 KOG1316|consensus 99.9 1.4E-23 3.1E-28 166.6 10.3 114 22-137 44-161 (464)
41 PRK14515 aspartate ammonia-lya 99.9 9.8E-23 2.1E-27 170.2 12.1 126 10-137 48-195 (479)
42 KOG2700|consensus 99.8 1.1E-19 2.4E-24 148.1 7.2 133 5-137 21-157 (481)
43 cd01594 Lyase_I_like Lyase cla 99.5 1.4E-13 3E-18 104.3 9.1 70 68-137 16-91 (231)
44 COG0114 FumC Fumarase [Energy 99.4 3.6E-13 7.8E-18 109.3 8.6 125 10-137 40-188 (462)
45 COG1027 AspA Aspartate ammonia 99.4 1.4E-12 3E-17 105.8 9.4 125 10-137 43-190 (471)
46 KOG1317|consensus 98.2 2.7E-06 6E-11 68.3 6.2 121 13-137 70-213 (487)
47 PF10925 DUF2680: Protein of u 85.9 2.8 6E-05 25.5 4.8 36 11-47 10-46 (59)
48 COG2445 Uncharacterized conser 71.9 17 0.00037 25.8 5.8 50 24-74 71-130 (138)
49 PRK08937 adenylosuccinate lyas 63.7 6.5 0.00014 29.4 2.5 21 22-43 2-22 (216)
50 KOG4797|consensus 56.3 55 0.0012 22.5 5.6 37 90-126 54-90 (123)
51 PF09851 SHOCT: Short C-termin 49.8 31 0.00067 17.9 3.0 23 23-46 7-29 (31)
52 cd08323 CARD_APAF1 Caspase act 44.3 57 0.0012 21.2 4.2 62 12-74 6-71 (86)
53 smart00576 BTP Bromodomain tra 37.6 1E+02 0.0022 19.2 4.7 25 22-46 11-36 (77)
54 KOG2199|consensus 35.0 2.4E+02 0.0053 23.9 7.4 88 34-121 21-118 (462)
55 COG1908 FrhD Coenzyme F420-red 31.4 1.1E+02 0.0023 21.6 4.1 36 14-49 74-117 (132)
56 PF13265 DUF4056: Protein of u 31.2 1.4E+02 0.0029 23.8 5.1 22 7-28 174-196 (270)
57 PF01934 DUF86: Protein of unk 29.9 1.7E+02 0.0036 19.3 5.1 20 26-46 64-83 (119)
58 PF11348 DUF3150: Protein of u 29.5 2.7E+02 0.0059 21.7 8.4 41 9-49 46-93 (257)
59 COG0529 CysC Adenylylsulfate k 28.9 87 0.0019 23.7 3.5 29 4-32 68-96 (197)
60 KOG3341|consensus 28.4 79 0.0017 24.5 3.3 28 103-130 29-56 (249)
61 PF01257 2Fe-2S_thioredx: Thio 28.4 1.1E+02 0.0024 21.5 3.9 31 22-54 18-48 (145)
62 TIGR01958 nuoE_fam NADH-quinon 28.4 1.4E+02 0.0029 21.1 4.4 31 22-54 21-51 (148)
63 cd08330 CARD_ASC_NALP1 Caspase 28.4 1.6E+02 0.0035 18.7 4.4 35 10-45 4-41 (82)
64 COG4710 Predicted DNA-binding 28.3 1.1E+02 0.0023 19.6 3.4 24 84-115 26-49 (80)
65 PRK07539 NADH dehydrogenase su 27.9 1.4E+02 0.003 21.3 4.4 31 22-54 27-57 (154)
66 PF01402 RHH_1: Ribbon-helix-h 27.6 91 0.002 16.3 2.7 18 85-102 21-38 (39)
67 PRK14847 hypothetical protein; 25.7 70 0.0015 26.1 2.8 15 80-94 124-138 (333)
68 PF11486 DUF3212: Protein of u 24.8 48 0.0011 22.8 1.4 16 6-21 2-17 (120)
69 TIGR03161 ribazole_CobZ alpha- 24.5 86 0.0019 22.4 2.8 18 85-102 8-25 (140)
70 cd08326 CARD_CASP9 Caspase act 24.3 2E+02 0.0044 18.4 4.9 62 12-74 8-73 (84)
71 PF10335 DUF294_C: Putative nu 24.2 1.6E+02 0.0035 20.5 4.2 21 25-46 69-89 (145)
72 PRK05988 formate dehydrogenase 23.8 1.9E+02 0.0041 20.8 4.5 31 22-54 28-58 (156)
73 PF14043 WVELL: WVELL protein 22.3 2.2E+02 0.0048 18.1 4.7 60 26-90 11-73 (75)
74 PF06382 DUF1074: Protein of u 21.4 1.8E+02 0.0039 21.7 4.0 34 61-102 82-115 (183)
75 PRK07571 bidirectional hydroge 21.4 2.2E+02 0.0048 20.8 4.5 30 22-53 41-70 (169)
76 PF07328 VirD1: T-DNA border e 21.0 2.6E+02 0.0056 20.0 4.5 34 101-134 72-105 (147)
77 cd03568 VHS_STAM VHS domain fa 20.6 3.2E+02 0.0068 19.3 5.7 76 34-120 34-109 (144)
78 cd05146 RIO3_euk RIO kinase fa 20.2 1.7E+02 0.0036 21.9 3.7 30 9-38 64-94 (197)
79 PF07798 DUF1640: Protein of u 20.1 3.5E+02 0.0076 19.6 7.4 25 22-48 6-30 (177)
80 PF01166 TSC22: TSC-22/dip/bun 20.0 26 0.00056 21.3 -0.6 36 91-126 2-37 (59)
No 1
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=249.66 Aligned_cols=131 Identities=34% Similarity=0.446 Sum_probs=127.1
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcC-cccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~ 81 (137)
.+||++++++.|++|| |++++++++|+ ||+++++.|.+.+ ..+|++++.+.+++++|||+++++.|.+.+| +.++
T Consensus 12 ~ifS~~~~~~~~l~vE~ala~A~aelG~-Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~HdV~a~v~~l~e~~~~~~~~ 90 (438)
T COG0015 12 AIFSEEAKLRAWLKVEAALARAQAELGV-IPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDVKALVRALAEKVGEEASE 90 (438)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhcccccCHHHHHHHHHHhCCCcHHHHHHHHHhcCccccc
Confidence 5899999999999999 99999999999 9999999999886 5789999999999999999999999999999 6799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||+|+|||||+||+++|++|++++++.++|.++++.|.++|.+|++|||+|||||
T Consensus 91 ~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHg 146 (438)
T COG0015 91 YVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHG 146 (438)
T ss_pred ceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccC
Confidence 99999999999999999999999999999999999999999999999999999997
No 2
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.6e-36 Score=248.47 Aligned_cols=131 Identities=26% Similarity=0.316 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|++|| |++++++++|+ ||+++++.|.+.+ ..+|++++.+.+..++|||+++++.|++++|+.++|
T Consensus 12 ~i~s~~~~~~~~l~vE~ala~a~~~~g~-ip~~aa~~i~~~~~~~~~d~~~~~~~~~~~~h~v~a~~~~L~~~~g~~~~~ 90 (435)
T PRK07492 12 AIWEPETKFRIWFEIEAHACEAQAELGV-IPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDVIAFLTHLAEFVGPDARF 90 (435)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCcccCCCHHHHHHHHHHhCCChHHHHHHHHHHhhHhhhh
Confidence 5899999999999999 99999999999 9999999999876 248999999999999999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 91 vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 145 (435)
T PRK07492 91 VHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHG 145 (435)
T ss_pred hcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 3
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.3e-36 Score=248.43 Aligned_cols=130 Identities=26% Similarity=0.363 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| |++++++++|+ ||+++++.|.+.+ ++|++++.+.+..++|||+++++.|++++|+.++|||
T Consensus 12 ~~fs~~~~~~~~l~vE~ala~a~~~~g~-ip~~aa~~i~~~~-~~d~~~i~~~~~~~~h~v~a~v~~l~~~~g~~~~~vH 89 (431)
T PRK07380 12 NIWTDTAKFQTWLDVEIAVCEAQAELGK-IPQEAVEEIKAKA-NFDPQRILEIEAEVRHDVIAFLTNVNEYVGDAGRYIH 89 (431)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhcc-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhcccc
Confidence 5799999999999999 99999999999 9999999998876 5999999999999999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||+||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 90 ~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 142 (431)
T PRK07380 90 LGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHG 142 (431)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcC
Confidence 99999999999999999999999999999999999999999999999999997
No 4
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1e-35 Score=246.22 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| ||+++|+++|+ ||+++++.|.+++. +|++++.+.+..++|||+++++.|.+++|+.++|||
T Consensus 12 ~i~s~~~~~~~~l~ve~A~a~al~~~G~-Ip~~~a~~I~~~~~-~d~~~~~~~~~~~~~dv~~~v~~L~e~~g~~~~~vH 89 (442)
T PRK08470 12 KKWTMQAKYDAWLEVEKAAVKAWNKLGL-IPDSDCEKICKNAK-FDIARIDEIEKTTKHDLIAFLTSVSESLGEESRFVH 89 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcc-cchHHHHHHHHccCCChHHHHHHHHHHcccccccee
Confidence 5899999999999999 99999999999 99999999999984 788888888888999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||+||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 90 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 142 (442)
T PRK08470 90 YGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHG 142 (442)
T ss_pred cCCChhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCC
Confidence 99999999999999999999999999999999999999999999999999997
No 5
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=8.9e-35 Score=240.32 Aligned_cols=132 Identities=55% Similarity=0.823 Sum_probs=127.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+||++++++.|++|| |++++++++|++||+++++.|.+.+.++|++++.+.++.++|||+++++.|++++|+.++|+|
T Consensus 12 ~~fs~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~vH 91 (436)
T cd03302 12 YIFSPRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAAEEKKLRHDVMAHVHAFGLLCPAAAGIIH 91 (436)
T ss_pred HHcChHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHHHHHHhCcCchHHHHHHHHHhHhccCeee
Confidence 5899999999999999 999999999976899999999988756899999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||++||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 92 ~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~ 144 (436)
T cd03302 92 LGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHY 144 (436)
T ss_pred eCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 6
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.1e-34 Score=236.70 Aligned_cols=130 Identities=32% Similarity=0.413 Sum_probs=124.1
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| ||+++|+++|+ ||++++++|.++++ .+.+++.+.+...+||++++|+.|++++|+.++|+|
T Consensus 9 ~~fs~~~~~~~~l~ve~A~a~~l~~~Gl-ip~~~a~~I~~~l~-~~~~~~~~~~~~~~~dv~~~e~~L~~~~g~~~~~lH 86 (387)
T cd01360 9 KIWSEENKFRKWLEVEAAVCEAWAKLGV-IPAEAAEEIRKKAK-FDVERVKEIEAETKHDVIAFVTAIAEYCGEAGRYIH 86 (387)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHhh-cCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhee
Confidence 5899999999999999 99999999999 99999999999985 567777777778899999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 87 ~G~S~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 139 (387)
T cd01360 87 FGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHG 139 (387)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcC
Confidence 99999999999999999999999999999999999999999999999999997
No 7
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=1.1e-34 Score=236.25 Aligned_cols=131 Identities=37% Similarity=0.521 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|+++| ||+++|+++|+ ||++++++|.+++.. +|++++.+.+..++||++++|++|++++|+ .++
T Consensus 3 ~~~s~~~~~~~~l~ve~A~a~~l~~~gi-ip~~~a~~i~~~l~~~~~d~~~~~~~~~~~~~~v~~~e~~L~~~~g~~~~~ 81 (381)
T cd01595 3 AIFSEENKLRTWLDVEAALAEAQAELGL-IPKEAAEEIRAAADVFEIDAERIAEIEKETGHDVIAFVYALAEKCGEDAGE 81 (381)
T ss_pred hHhChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhhhcccCCHHHHHHHHHHhCcCcHHHHHHHHHHhhhHhhh
Confidence 5899999999999999 99999999999 999999999998865 678888777778899999999999999998 799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+|||||||||+
T Consensus 82 ~vH~g~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~ 137 (381)
T cd01595 82 YVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHG 137 (381)
T ss_pred HeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 8
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.3e-34 Score=238.74 Aligned_cols=131 Identities=29% Similarity=0.451 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc--cCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~--~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|+++| ||++||+++|+ ||+++++.|.+++. .+|++++.+.+.+++||++++++.|++++|+.++|
T Consensus 17 ~i~s~~~~~~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~dv~~~~~~L~~~~g~~~~~ 95 (451)
T PRK06390 17 YIFDDENRLRYMLKVEAAIAKAEYEYGI-IPRDAFLDIKNAVDSNSVRLERVREIESEIKHDVMALVEALSEQCSAGKNY 95 (451)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhh
Confidence 5899999999999999 99999999999 99999999999884 36777777778888999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 96 iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 150 (451)
T PRK06390 96 VHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHG 150 (451)
T ss_pred eecCccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 9
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=4.1e-34 Score=237.08 Aligned_cols=131 Identities=30% Similarity=0.412 Sum_probs=125.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcC-cccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~ 81 (137)
.+|||+++++.|++|| ||+++|.++|+ ||+++++.|.+++.. +|.+.+...+...+||++++|+.|++++| +.++
T Consensus 17 ~~~s~~~~~~~~l~ve~A~a~~l~~~Gi-ip~~~a~~I~~~l~~~~i~~~~~~~~~~~~~~~v~~~e~~L~~~~~~~~~~ 95 (449)
T PRK08540 17 RVWSEENKLQKMLDVEAALARAEAELGL-IPEEAAEEINRKASTKYVKLERVKEIEAEIHHDIMAVVKALSEVCEGDAGE 95 (449)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhc
Confidence 5899999999999999 99999999999 999999999999976 88888877778889999999999999995 6799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 96 ~vH~g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~ 151 (449)
T PRK08540 96 YVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHG 151 (449)
T ss_pred ceecCccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 10
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=3.6e-34 Score=235.80 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCH------HHHHHHHHhccc---CCHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITR------DQIEELKDNMMK---LDLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~------~~a~~I~~~l~~---~~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
.+|||+++++.|++|| |++++|+++|+ ||+ ++++.|.+.+.. +|++++.+.+..++|||+++++.|+++
T Consensus 3 ~~~s~~~~~~~~l~vE~ala~a~a~~g~-Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~~~~~hdv~al~~~l~~~ 81 (425)
T cd01598 3 PYFSEYALIKYRVQVEVEWLIALSNLEE-IPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYFLKEK 81 (425)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 5799999999999999 99999999999 999 999999988743 789999999999999999999999999
Q ss_pred cC------cccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR------KASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g------~~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.++|+|+|+|||||+||+++|++|+++ ..+.+.|..++++|.++|++|++||||||||+
T Consensus 82 ~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~ 150 (425)
T cd01598 82 FETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHG 150 (425)
T ss_pred hcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCC
Confidence 97 3578999999999999999999999999 56789999999999999999999999999997
No 11
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=9.7e-34 Score=228.61 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=123.6
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|++|| |+++++.++|+ ||+++++.|.+++.. +|..++.+.+..++|++.++++.|++++|+ .++
T Consensus 22 ~~~s~~~~i~a~l~vE~A~a~a~~~~G~-Ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~ 100 (351)
T PRK05975 22 ALFSAEADIAAMLAFEAALAEAEAEHGI-IPAEAAERIAAACETFEPDLAALRHATARDGVVVPALVRQLRAAVGEEAAA 100 (351)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHhccCCCCHHHHhhHHHhcCCcHHHHHHHHHHHhCchhhC
Confidence 5799999999999999 99999999999 999999999999865 467777777888899999999999999974 689
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 101 ~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~ 156 (351)
T PRK05975 101 HVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRM 156 (351)
T ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 12
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=2.6e-33 Score=225.19 Aligned_cols=131 Identities=24% Similarity=0.316 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|++|| ||+.+|.++|+ ||+++++.|.+++++ +|+..+.+.+..++|+++++|+.|++++|+ .++
T Consensus 13 ~i~sd~~~i~~~~~ve~A~a~al~~~Gi-i~~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~g~ 91 (338)
T TIGR02426 13 ELFSDRAFLRAMLDFEAALARAQADAGL-IPAEAAAAIEAACAAAAPDLEALAHAAATAGNPVIPLVKALRKAVAGEAAR 91 (338)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhhccCCCCHHHHHhHHHhcCCcHHHHHHHHHHHhCccccC
Confidence 5799999999999999 99999999999 999999999999975 466667777778899999999999999985 689
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+||||+++|+++|++|+++..+.+.+..++++|.++|++|+++|||||||+
T Consensus 92 ~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~ 147 (338)
T TIGR02426 92 YVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLL 147 (338)
T ss_pred cccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 13
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1.9e-33 Score=232.36 Aligned_cols=131 Identities=34% Similarity=0.484 Sum_probs=124.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|+++| ||+.+|+++|+ ||+++++.|.+++ +.+|++++.+.+...+||++++|+.|++++|+.++|
T Consensus 12 ~ifs~~~~~~~~l~ve~A~a~~l~~~gi-ip~~~a~~i~~~~~~~~~d~~~l~~~~~~~~~~v~~~e~~l~~~~g~~~~~ 90 (435)
T TIGR00928 12 AIWSEENKFKTWLDVEVALLRALAELGV-IPAEAVKEIRAKANFTDVDLARIKEIEAVTRHDVKAVVYALKEKCGAEGEF 90 (435)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhCCCCccCHHHHHHHHHHHCcChHHHHHHHHHHhhhhhhh
Confidence 5899999999999999 99999999999 9999999999873 446788887777889999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 91 vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 145 (435)
T TIGR00928 91 IHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHG 145 (435)
T ss_pred eeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcC
Confidence 9999999999999999999999999999999999999999999999999999996
No 14
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=5e-33 Score=229.87 Aligned_cols=132 Identities=29% Similarity=0.418 Sum_probs=124.4
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-cc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-AS 80 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~ 80 (137)
+.+||++++++.|+.|| ||++||.++|+ ||+++++.|.+++.. .+++.+...+.+++|+|++++++|++++|+ .|
T Consensus 12 ~~~~s~~~~i~~~~~ve~A~a~~l~~~Gi-i~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g 90 (437)
T cd01597 12 REIFSDENRVQAMLDVEAALARAQAELGV-IPKEAAAEIAAAADVERLDLEALAEATARTGHPAIPLVKQLTAACGDAAG 90 (437)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccccCCCHHHHHHHHHHhCCCcHHHHHHHHHHcCcccc
Confidence 36899999999999999 99999999999 999999999998854 567777777888999999999999999996 49
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+++|||||||+
T Consensus 91 ~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~ 147 (437)
T cd01597 91 EYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHL 147 (437)
T ss_pred CeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcC
Confidence 999999999999999999999999999999999999999999999999999999996
No 15
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=1.1e-32 Score=228.84 Aligned_cols=131 Identities=25% Similarity=0.353 Sum_probs=125.9
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcC----c
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR----K 78 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g----~ 78 (137)
.+|||+++++.|++|| |+|++++++|+ ||++.++.|.+++ +.+|++.+..++..++|+++++++.|.+.+| +
T Consensus 19 ~i~s~~~~i~a~l~ve~A~A~a~~~~G~-ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~ 97 (452)
T PRK09053 19 AIFSDRATVQRMLDFEAALARAEAACGV-IPAAAVAPIEAACDAERLDLDALAQAAALAGNLAIPLVKQLTAQVAARDAE 97 (452)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccccCCCHHHHHHHHhhcCCchHHHHHHHHHHhcccCcc
Confidence 5799999999999999 99999999999 9999999999998 4589999999999999999999999999996 3
Q ss_pred ccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 ~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.++|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 98 ~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~ 156 (452)
T PRK09053 98 AARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156 (452)
T ss_pred hhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccC
Confidence 58999999999999999999999999999999999999999999999999999999997
No 16
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=7.7e-33 Score=229.70 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=123.0
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCC---CH---HHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNI---TR---DQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i---~~---~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
.+||++++++.|++|| |+++++++.|+ | |+ ++++.|.+.+..+ |++++.+.+..++|||+++++.++++
T Consensus 28 ~ifSd~a~~~~~l~vE~ala~a~a~~g~-i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~e~~t~hdv~a~~~~l~~~ 106 (458)
T PLN02848 28 PIFSEFGLIRYRVLVEVKWLLKLSQIPE-VTEVPPFSDEANSFLEGIIAGFSVDDALEVKKIERVTNHDVKAVEYFLKQK 106 (458)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5899999999999999 99999999999 7 76 9999999887567 78888899999999999999999999
Q ss_pred cC---c---ccCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR---K---ASSIIHLGATSCYVGDNTDLIQIRDAFDI-LIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g---~---~~~~lH~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| + .++|+|+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|+++||+||||+
T Consensus 107 ~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt~m~GRTH~ 175 (458)
T PLN02848 107 CKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHG 175 (458)
T ss_pred hccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccC
Confidence 96 2 45899999999999999999999999998 999999999999999999999999999997
No 17
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=4.3e-32 Score=225.23 Aligned_cols=133 Identities=24% Similarity=0.234 Sum_probs=120.5
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCC--CCHH---HHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLN--ITRD---QIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~--i~~~---~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
..+||++++++.|+++| ||+++|++.|+- ||+. +++.|.+.+..+ |++++.+.+..++|||+++++.|+++
T Consensus 24 ~~~~s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~~~e~~~~hdv~a~~~~l~~~ 103 (456)
T PRK09285 24 RPIFSEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIKEIERTTNHDVKAVEYFLKEK 103 (456)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 35799999999999999 999999999861 3444 444487776557 89999999999999999999999999
Q ss_pred cC------cccCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR------KASSIIHLGATSCYVGDNTDLIQIRDAFDI-LIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g------~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|++||||||||+
T Consensus 104 ~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~ 172 (456)
T PRK09285 104 LAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHG 172 (456)
T ss_pred hcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeceecC
Confidence 97 368999999999999999999999999998 999999999999999999999999999997
No 18
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.97 E-value=2.6e-30 Score=216.77 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=113.7
Q ss_pred ccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---CCHHHHHhHHhhhcCchHHHHHH-HHHHcC-ccc
Q psy6016 7 FQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---LDLDRAAAEEKLTRHDVMAHVHV-YAEQCR-KAS 80 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---~~~~~~~~~~~~~~hdv~a~~~~-l~~~~g-~~~ 80 (137)
-|.++++++.|+++| ||+.||.++|| ||+++++.|.+++.+ ++++.+. ....+||++++++. +.+..| +.+
T Consensus 31 ~~~~~~~~~~~l~ve~Aha~~l~~~Gi-Ip~e~a~~I~~al~~~~~~~~~~l~--~~~~~edv~~~ie~~l~~~~G~~~g 107 (502)
T PRK06705 31 NFQRNYLLKDMFQVHKAHIVMLTEENL-MKKEEAKFILHALKKVEEIPEEQLL--YTEQHEDLFFLVEHLISQEAKSDFV 107 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhhhcccCccc--cCCCCCchHHHHHHHHHHhcCchhh
Confidence 367889999999999 99999999999 999999999998853 3444443 45678999777776 556676 579
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 108 ~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~ 164 (502)
T PRK06705 108 SNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHT 164 (502)
T ss_pred ccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCC
Confidence 999999999999999999999999999999999999999999999999999999996
No 19
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.97 E-value=1.6e-30 Score=207.75 Aligned_cols=123 Identities=31% Similarity=0.395 Sum_probs=111.4
Q ss_pred HHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC--CHHHHH-hHHhhhcCchHHHHHHHHHHcCcc-cCccccCCC
Q psy6016 14 INKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL--DLDRAA-AEEKLTRHDVMAHVHVYAEQCRKA-SSIIHLGAT 88 (137)
Q Consensus 14 ~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~--~~~~~~-~~~~~~~hdv~a~~~~l~~~~g~~-~~~lH~G~T 88 (137)
++.|+.+| ||+++|.++|+ ||+++++.|.+++..+ +..... ..+..++|++++++++|++++|+. ++|+|+|+|
T Consensus 1 ~~~~l~ve~A~a~al~~~Gl-i~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S 79 (325)
T cd01334 1 IRADLQVEKAHAKALAELGL-LPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRS 79 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCC
Confidence 35789999 99999999999 9999999999998553 333332 345667899999999999999987 999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 89 snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||++||+++|++|+++..+.+.|.+++++|.++|.+|++||||||||+
T Consensus 80 ~nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 128 (325)
T cd01334 80 SNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHL 128 (325)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccc
Confidence 9999999999999999999999999999999999999999999999996
No 20
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.96 E-value=1.5e-29 Score=209.01 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC----CHHHHHhHHhhhcCchHHHHHHHHHHcCcccCcc
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL----DLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSII 83 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~----~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~l 83 (137)
.|++.++.|+.+| ||+.||.++|+ ||+++++.|.+++..+ +.+.+.... ..++++++++++|++++|+.++|+
T Consensus 4 ~d~~~~~~~~~ve~A~a~al~~~Gi-i~~~~a~~I~~al~~~~~~~~~~~~~~~~-~~~~~~~~~e~~l~~~~g~~~~~i 81 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLAEQGI-LTEEEAAKILAGLAKIRAEIEAGAFELDP-EDEDIHMAIERRLIERIGDVGGKL 81 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhcccCCccCCC-CCCcHHHHHHHHHHHHHHHHHhhh
Confidence 4788899999999 99999999999 9999999999988543 333443323 557777999999999999878999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 82 H~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~ 135 (435)
T cd01359 82 HTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHL 135 (435)
T ss_pred hccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 21
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.96 E-value=3.5e-29 Score=199.14 Aligned_cols=130 Identities=28% Similarity=0.331 Sum_probs=106.8
Q ss_pred ccChHHHHHHHHH-----HH-HHHHHHhhcCCCCCHHHHHHHHHhccc----CCHH---HHHhHHhhhcCchHH-HHHHH
Q psy6016 7 FQSYSGRINKVIK-----VY-SILFCSQELGLNITRDQIEELKDNMMK----LDLD---RAAAEEKLTRHDVMA-HVHVY 72 (137)
Q Consensus 7 ~~s~~~~~~~~~~-----ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~----~~~~---~~~~~~~~~~hdv~a-~~~~l 72 (137)
+||+.++++.|+. +| |+++|+++.|+ ||++.+++|.++++. ++.+ .+...+...++++.. +.+.+
T Consensus 13 ~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (312)
T PF00206_consen 13 IFSDRARFDFWLAEYDIRVEAALAKALAEAGI-IPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIGHAVEANLNEVL 91 (312)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTS-STHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHHHHHHHHHHHHH
T ss_pred HHCHHHHhCCEeeccHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhhccccccchhhhhccchhHHHHHHHHHh
Confidence 6899999999999 99 99999999999 999999999998854 3333 222223334555544 44445
Q ss_pred HHHcC---cccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 73 AEQCR---KASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 73 ~~~~g---~~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+.+| +.++|+|+|+||||++||+++|++|+++ ..+.+.|..++++|.++|++|++||||||||+
T Consensus 92 ~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~ 160 (312)
T PF00206_consen 92 GELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHG 160 (312)
T ss_dssp HHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred hhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceecccccc
Confidence 55554 6699999999999999999999999999 67999999999999999999999999999997
No 22
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.96 E-value=4.7e-29 Score=220.66 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHHcC-cccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~~lH 84 (137)
++++++.|+++| ||+.||+++|+ ||+++++.|.+++.++ +++.+.......+ +++++|+.|++++| +.++|+|
T Consensus 434 ~~~~~~~~~~~~~Ah~~~l~~~gi-i~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~~L~~~~g~~~~~~lH 511 (887)
T PRK02186 434 PLAELDHLAAIDEAHLVMLGDTGI-VAPERARPLLDAHRRLRDAGFAPLLARPAPRG-LYMLYEAYLIERLGEDVGGVLQ 511 (887)
T ss_pred hhhhhHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHhHHhhCcCCCCCcc-hHHHHHHHHHHHhChhhhcccC
Confidence 899999999999 99999999999 9999999999988443 2222221111222 55999999999999 5799999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|||||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 512 ~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~ 564 (887)
T PRK02186 512 TARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQY 564 (887)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccC
Confidence 99999999999999999999999999999999999999999999999999997
No 23
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.96 E-value=1.8e-28 Score=203.51 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC------C---HHHHHhHHhhh----cCchHHHHHHHHH
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL------D---LDRAAAEEKLT----RHDVMAHVHVYAE 74 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~---~~~~~~~~~~~----~hdv~a~~~~l~~ 74 (137)
.|+++++.|+++| ||++||+++|+ ||+++++.|.+++..+ | ++...+++.++ +|++++++ . .+
T Consensus 36 ~d~~~i~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~-~-~e 112 (450)
T cd01357 36 IHPELIRALAMVKKAAALANAELGL-LDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-A-LE 112 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhHHHHHH-H-HH
Confidence 4789999999999 99999999999 9999999999987432 2 34444444455 78888777 3 88
Q ss_pred HcCc-ccCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRK-ASSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~-~~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++|+ .|+| ||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 113 ~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~ 184 (450)
T cd01357 113 LLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQL 184 (450)
T ss_pred HhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 8884 5787 9999999999999999999999999999999999999999999999999999997
No 24
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.96 E-value=6.3e-29 Score=212.76 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=114.0
Q ss_pred ccChHHHHHHHHHHH------HHHHHHhhcCCCCCHHHHHHHHHhcccC------CHHHHHhHHhhhcCchHHHHHHHHH
Q psy6016 7 FQSYSGRINKVIKVY------SILFCSQELGLNITRDQIEELKDNMMKL------DLDRAAAEEKLTRHDVMAHVHVYAE 74 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve------A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~~~~~~~~~~~~~hdv~a~~~~l~~ 74 (137)
.||+..+++.|+.+| ||+.||+++|| ||+++++.|.+++..+ |++.+.+.+.+++|+++ ++.|++
T Consensus 18 ~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Gi-ip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ed~h~~i--e~~L~~ 94 (614)
T PRK12308 18 QFNDSLRFDYRLAEQDIVGSIAWSKALLSVGV-LSEEEQQKLELALNELKLEVMEDPEQILLSDAEDIHSWV--EQQLIG 94 (614)
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHH--HHHHHH
Confidence 488899999998888 89999999999 9999999999988543 22334445566777665 488999
Q ss_pred HcCcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 95 ~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~ 157 (614)
T PRK12308 95 KVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHL 157 (614)
T ss_pred HhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCC
Confidence 999889999999999999999999999999999999999999999999999999999999996
No 25
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.96 E-value=1.3e-28 Score=204.64 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=111.6
Q ss_pred ccChHHHHHHHHH---HH---HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHH-H--HhHHhhhcCchHHHHH-HHHHHc
Q psy6016 7 FQSYSGRINKVIK---VY---SILFCSQELGLNITRDQIEELKDNMMKLDLDR-A--AAEEKLTRHDVMAHVH-VYAEQC 76 (137)
Q Consensus 7 ~~s~~~~~~~~~~---ve---A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~-~--~~~~~~~~hdv~a~~~-~l~~~~ 76 (137)
.||+..+++.|+. || ||+.||+++|+ ||+++++.|.++|..+..+. . ........+|+..+++ .|.+++
T Consensus 18 ~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~edv~~~ie~~L~~~~ 96 (455)
T PRK04833 18 QFNDSLRFDYRLAEQDIVGSVAWSKALVTVGV-LTADEQQQLEEALNELLEEVRANPQQILASDAEDIHSWVEGKLIDKV 96 (455)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhhhcCCcccCCCCCchHHHHHHHHHHHHh
Confidence 5788999999999 88 99999999999 99999999999986541110 0 1111223456877776 799999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 97 g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~ 157 (455)
T PRK04833 97 GDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHL 157 (455)
T ss_pred ccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccC
Confidence 9778999999999999999999999999999999999999999999999999999999996
No 26
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.95 E-value=5.2e-28 Score=201.42 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=112.0
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-C------HHHHHhHHhhhc-------CchHHHH
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-D------LDRAAAEEKLTR-------HDVMAHV 69 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-~------~~~~~~~~~~~~-------hdv~a~~ 69 (137)
.++..++++++.|+++| ||++||.++|+ ||+++++.|.+++..+ + ...+......++ |+|++++
T Consensus 34 ~~~~~~~~~i~~~l~ve~A~a~al~e~Gi-Ip~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~ 112 (468)
T TIGR00839 34 NKISDIPEFVRGMVMVKKAAALANKELGT-IPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANL 112 (468)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccchHHHHHHH
Confidence 35666799999999999 99999999999 9999999999988442 2 122333344445 7777666
Q ss_pred HHHHHHcC-cccCcccc--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 70 HVYAEQCR-KASSIIHL--------GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 70 ~~l~~~~g-~~~~~lH~--------G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|.+++| +.|+|+|+ |+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 113 --l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 187 (468)
T TIGR00839 113 --ALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQL 187 (468)
T ss_pred --HHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 888899 57999995 9999999999999999999999999999999999999999999999999996
No 27
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.95 E-value=5.5e-28 Score=201.56 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHHHhHHhhhc----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRAAAEEKLTR----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~~~~~~~~~----hdv~a~~~~l~~~ 75 (137)
.+++++.|+++| ||++||.++|+ ||+++++.|.+++.. ++++...+++.++. |++++++ .+ ++
T Consensus 44 ~~~~~~~~l~ve~A~a~al~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~-~~-e~ 120 (472)
T PRK12273 44 YPELIRALAMVKKAAALANKELGL-LDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-AL-EL 120 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHHHHHHHHH-HH-HH
Confidence 478899999999 99999999999 999999999998843 55556655556667 7777776 44 78
Q ss_pred cCc-ccCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK-ASSI--IH------LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~-~~~~--lH------~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+ .++| +| +|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 121 ~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~ 191 (472)
T PRK12273 121 LGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQL 191 (472)
T ss_pred hCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEeecccC
Confidence 884 5767 99 99999999999999999999999999999999999999999999999999996
No 28
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.95 E-value=9.9e-28 Score=200.08 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC------C---HHHHHhHHhhh----cCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL------D---LDRAAAEEKLT----RHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~---~~~~~~~~~~~----~hdv~a~~~~l~~~ 75 (137)
+.++++.|+++| |||++|.++|+ ||+++++.|.+++..+ | ++...+++.++ +|++++ +.+.++
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~~~Gl-ip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~--~~l~e~ 118 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANADLGL-LPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIA--NRALEL 118 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhHHHH--HHHHHH
Confidence 588999999999 99999999999 9999999999988442 2 34444444455 667665 778899
Q ss_pred cCcc-cCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRKA-SSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~~-~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+. |+| ||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 119 ~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~ 189 (473)
T PRK13353 119 LGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQL 189 (473)
T ss_pred hCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccC
Confidence 9854 775 9999999999999999999999999999999999999999999999999999996
No 29
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.95 E-value=2e-27 Score=197.94 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhhhc-----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKLTR-----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~~~-----hdv~a~~~~l~~~ 75 (137)
|.++++.|+++| ||++||.++|+ ||+++++.|.+++..+ + +..+...+..++ |+++++ ...+.
T Consensus 41 ~~~~~~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~~~ 117 (464)
T PRK00485 41 PRELIRALALLKKAAARVNAELGL-LDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIAN--RASEL 117 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHH--HHHHh
Confidence 588899999999 99999999999 9999999999988543 2 222322223333 555554 23344
Q ss_pred cC-c--------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR-K--------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g-~--------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.| . .++|||+|+|||||++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 118 ~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 189 (464)
T PRK00485 118 LGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHL 189 (464)
T ss_pred cCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecC
Confidence 46 3 567777999999999999999999999 89999999999999999999999999999996
No 30
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.4e-27 Score=194.01 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhH---HhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDNTD 97 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~---~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~ 97 (137)
||+.||.+.|| |++++++.|.++|.++. +++.++ .....+|| .++|+.|++++|+.|+|+|+||||||||.|++
T Consensus 41 AH~~mL~~~Gi-i~~ee~~~I~~~L~~l~-~e~~~g~~~~~~~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~ 118 (459)
T COG0165 41 AHAKMLAKQGI-ITEEEAAKILEGLEELL-EEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDL 118 (459)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHH-HHHhcCCccCCCccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHH
Confidence 99999999999 99999999999996663 233222 12235677 88999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 98 LIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 98 ~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||+|+.+..|...+..|+++|.++|++|.+|+||||||+
T Consensus 119 rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHl 158 (459)
T COG0165 119 RLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHL 158 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccc
Confidence 9999999999999999999999999999999999999996
No 31
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.94 E-value=5.5e-27 Score=194.81 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhhhc-----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKLTR-----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~~~-----hdv~a~~~~l~~~ 75 (137)
++.+++.|++|| ||+++|+++|+ ||+++++.|.+++..+ + +..+......++ |++++ ....+.
T Consensus 37 ~~~~i~~~l~ve~A~a~al~~~Gi-Ip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~--~~~~~~ 113 (455)
T cd01362 37 PRELIRALGLLKKAAAQANAELGL-LDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIA--NRAIEL 113 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccCCceehhhccccccccccHHHHHH--HHHHHh
Confidence 478899999999 99999999999 9999999999988443 2 222222222333 44443 222344
Q ss_pred cC---------cccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR---------KASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g---------~~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.| ..++|||+|+|||||+||+++|++|+++. .+.+.|..++++|.++|++|++|+||||||+
T Consensus 114 ~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~ 185 (455)
T cd01362 114 LGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHL 185 (455)
T ss_pred cCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 46 34778999999999999999999999994 6999999999999999999999999999996
No 32
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.94 E-value=9.1e-27 Score=193.63 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=107.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc-----CC---HHHHHhHHhhhc-----CchHHHHHHHHHHc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK-----LD---LDRAAAEEKLTR-----HDVMAHVHVYAEQC 76 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~-----~~---~~~~~~~~~~~~-----hdv~a~~~~l~~~~ 76 (137)
...++.|++|| ||++||.++|+ ||+++++.|.+++.. +| +..+.+.+..++ |+|+++ .+.+++
T Consensus 39 ~~~i~a~~~ve~A~a~a~~~~Gi-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~--~l~e~~ 115 (458)
T TIGR00979 39 LELIHAFAILKKAAAIVNEDLGK-LDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIAN--RAIELL 115 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCceecccccccccccccHHHHHHH--HHHHHc
Confidence 77899999999 99999999999 999999999998844 33 233333444555 888877 789999
Q ss_pred Cc-c--cCccc------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RK-A--SSIIH------LGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~-~--~~~lH------~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+ . ++|+| +|+||||+++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 116 g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 186 (458)
T TIGR00979 116 GGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHL 186 (458)
T ss_pred CcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccc
Confidence 84 4 35699 699999999999999999999 69999999999999999999999999999997
No 33
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.94 E-value=1.6e-26 Score=192.04 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHh--HHhhhcCch-HHHHHHHHHHcC-cccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAA--EEKLTRHDV-MAHVHVYAEQCR-KASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~--~~~~~~hdv-~a~~~~l~~~~g-~~~~~lH 84 (137)
|...+..-+.++ ||+.||.++|+ ||++.++.|.++|+++....... ......+|+ +++++.|++++| +.++|+|
T Consensus 24 d~~l~~~~i~~~~Ah~~~L~~~G~-l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d~~~~ie~~l~e~~g~~~g~~iH 102 (455)
T TIGR00838 24 DKELAEYDIEGSIAHTKMLKKAGI-LTEEEAAKIIEGLNELKEEGREGPFILDPDDEDIHMAIERELIDRVGEDLGGKLH 102 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCcHHHHHHHHHHHHhCCCccCCcc
Confidence 444455557788 99999999999 99999999999987652211110 012234677 789999999999 6688999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+++|||||||+
T Consensus 103 ~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~ 155 (455)
T TIGR00838 103 TGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHL 155 (455)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccc
Confidence 99999999999999999999999999999999999999999999999999996
No 34
>PLN02646 argininosuccinate lyase
Probab=99.94 E-value=1.1e-26 Score=193.77 Aligned_cols=119 Identities=22% Similarity=0.225 Sum_probs=100.9
Q ss_pred HHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hH-HhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHH
Q psy6016 18 IKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AE-EKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVG 93 (137)
Q Consensus 18 ~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~-~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~ 93 (137)
+... ||+.||.++|+ ||+++++.|.++|+++..+... .. ......|+ +++|+.|.+++|+.|+|+|+|+|||||+
T Consensus 49 i~~~~Aha~~L~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~f~~~~~~ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v 127 (474)
T PLN02646 49 IMGSKAHASMLAKQGI-ITDEDRDSILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELIGEPAKKLHTARSRNDQV 127 (474)
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCcCCCCCCchHHHHHHHHHHHhchhhCcccCCCChhhHH
Confidence 4445 99999999999 9999999999998665211110 00 01112455 8899999999998789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 94 DNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 94 dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 128 ~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHl 171 (474)
T PLN02646 128 ATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHL 171 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCC
Confidence 99999999999999999999999999999999999999999996
No 35
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.93 E-value=6.9e-26 Score=188.48 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=106.9
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hH-HhhhcCch-HHHHHHHHHHcCcccCccccC
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AE-EKLTRHDV-MAHVHVYAEQCRKASSIIHLG 86 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~-~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G 86 (137)
...+.....++ ||+.||.++|+ ||++.++.|.++|.++...... .. ....++|+ +++++++.+++|+.++|+|+|
T Consensus 30 ~~~~~~~~~~~~Aha~~l~~~G~-l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~d~~~~ie~~l~~~~g~~g~~iH~g 108 (459)
T PRK00855 30 KRLAEEDIAGSIAHARMLAKQGI-LSEEEAEKILAGLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTG 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhcccCCcccCCCCCcHHHHHHHHHHHHhccccCcccCC
Confidence 34455667789 99999999999 9999999999998665311110 00 01135666 788889999999778999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 87 ~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 109 ~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~ 159 (459)
T PRK00855 109 RSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHL 159 (459)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCC
Confidence 999999999999999999999999999999999999999999999999996
No 36
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.93 E-value=2.5e-25 Score=184.67 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhh-hcC-chHHHHHHHH-HHcC
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKL-TRH-DVMAHVHVYA-EQCR 77 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~-~~h-dv~a~~~~l~-~~~g 77 (137)
+++.++.|+++| ||++||++.|+ ||+++++.|.+++..+ | +..+...... +.| .|.+++..+. +++|
T Consensus 37 ~~~~i~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (450)
T cd01596 37 PPELIRALALVKKAAALANAELGL-LDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLG 115 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCcccHHhccCcccccchHHHHHHHHHHHHhc
Confidence 478899999999 99999999999 9999999999988543 2 1122211111 211 1222233333 6778
Q ss_pred c-ccCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 78 K-ASSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 78 ~-~~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+ .|+| +|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 116 ~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 184 (450)
T cd01596 116 GKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHL 184 (450)
T ss_pred cccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 4 4777 6799999999999999999999999999999999999999999999999999996
No 37
>PRK12425 fumarate hydratase; Provisional
Probab=99.91 E-value=1.8e-24 Score=180.10 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=103.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hHH-----hhhcCch-HHHH----HHHHHHcCc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AEE-----KLTRHDV-MAHV----HVYAEQCRK 78 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~~-----~~~~hdv-~a~~----~~l~~~~g~ 78 (137)
...++.+..|. |||.||.++|+ ||++.+++|.++|+++...... ... ...+.|+ ++++ +.+.+++|+
T Consensus 40 ~~~i~a~~~ik~Aha~~l~~~G~-l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~ 118 (464)
T PRK12425 40 LAVLHALALIKKAAARVNDRNGD-LPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGN 118 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCc
Confidence 67799999999 99999999999 9999999999998665211110 000 1124555 6663 445566675
Q ss_pred -ccCc--------cccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 -ASSI--------IHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 -~~~~--------lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.|++ ||+|+||||+++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 119 ~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHl 187 (464)
T PRK12425 119 GRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHM 187 (464)
T ss_pred ccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 5667 99999999999999999999999 59999999999999999999999999999997
No 38
>PRK06389 argininosuccinate lyase; Provisional
Probab=99.91 E-value=1.8e-24 Score=178.29 Aligned_cols=114 Identities=16% Similarity=0.055 Sum_probs=97.4
Q ss_pred HHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHH
Q psy6016 18 IKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDN 95 (137)
Q Consensus 18 ~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dT 95 (137)
+... ||+.||.+.|| ||++++..|.++|.++....+. .....+|+ .++|..|++++|+.|+++|+|||||||+.|
T Consensus 36 i~~~~AH~~mL~~~gi-i~~~e~~~i~~~L~~i~~~~~~--~~~~~EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat 112 (434)
T PRK06389 36 IINLLAYHVALAQRRL-ITEKAPKCVINALIDIYKNGIE--IDLDLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHA 112 (434)
T ss_pred HHHhHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCCCc--CCCCCCchHHHHHHHHHHHhchhhhhhcccCCHHHHHHH
Confidence 3445 99999999999 9999999999998665211110 01224566 788889999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 96 TDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 96 a~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+++|++|+.+..+...+..++++|++. |.||+||||||+
T Consensus 113 ~~RL~~r~~~~~~~~~l~~l~~~l~~~---~~dtimpGyTHl 151 (434)
T PRK06389 113 DLNLFIIDKIIEIEKILYEIIKVIPGF---NLKGRLPGYTHF 151 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCceecccccc
Confidence 999999999999999999999999965 999999999996
No 39
>PLN00134 fumarate hydratase; Provisional
Probab=99.91 E-value=7e-24 Score=176.40 Aligned_cols=126 Identities=18% Similarity=0.100 Sum_probs=103.2
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHH---------HHHhHHhh-hcCch-HHHHHHHHHHcCc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLD---------RAAAEEKL-TRHDV-MAHVHVYAEQCRK 78 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~---------~~~~~~~~-~~hdv-~a~~~~l~~~~g~ 78 (137)
++.++.++.|+ ||++|+.+.|+ ||++.++.|.++|+++... .+..+... ...++ ..++..+.+++|+
T Consensus 34 ~~~i~a~~~v~~A~a~~l~~~G~-l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~l~e~~g~ 112 (458)
T PLN00134 34 EPIVRAFGIVKKAAAKVNMEYGL-LDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGG 112 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCcHHHHHHHHHHHHhCc
Confidence 77899999999 99999999999 9999999999998654211 11111111 12333 2346678899995
Q ss_pred -ccCc--cc------cCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 -ASSI--IH------LGATSCYVGDNTDLIQIR-DAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 -~~~~--lH------~G~TsnDi~dTa~~L~lr-~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.|+| +| +|+||||+++|+++|++| +++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 113 ~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 181 (458)
T PLN00134 113 PVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTHL 181 (458)
T ss_pred ccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 5777 88 999999999999999999 55889999999999999999999999999999996
No 40
>KOG1316|consensus
Probab=99.90 E-value=1.4e-23 Score=166.64 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=101.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHH---hhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEE---KLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDNTD 97 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~---~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~ 97 (137)
|+|++|.++|+ |++++.++|.++++.+..+ +.+.. ..+.+|| .+.|+.|.+.+|+.++++|+||||||||.|.+
T Consensus 44 aya~~L~~~gl-it~~e~dkil~gLe~i~~e-w~~~kf~~~p~dEDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDl 121 (464)
T KOG1316|consen 44 AYAKALEKAGL-ITEAELDKILKGLEKIRRE-WAAGKFKLNPNDEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDL 121 (464)
T ss_pred HHHHHHHHcCC-CcHHHHHHHHHHHHHHHHH-HhcCceEeCCCchhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHH
Confidence 99999999999 9999999999998766322 22211 1234566 78999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 98 LIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 98 ~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||+|++++.++..+..|++++.++|+.+.+++||||||+
T Consensus 122 RLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHL 161 (464)
T KOG1316|consen 122 RLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHL 161 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeccChhhh
Confidence 9999999999999999999999999999999999999996
No 41
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.89 E-value=9.8e-23 Score=170.18 Aligned_cols=126 Identities=11% Similarity=0.090 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-----hHHhhhcCc------h-HHHHHHHHHHc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-----AEEKLTRHD------V-MAHVHVYAEQC 76 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-----~~~~~~~hd------v-~a~~~~l~~~~ 76 (137)
+...++.+..+. |||.|+.++|+ ||++.+++|.++|+++...... .... .+.+ + ..+++.+.+++
T Consensus 48 ~~~~i~~~~~v~~A~a~~l~~~G~-l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~-~g~~t~~nmnvnevie~~~~~~~ 125 (479)
T PRK14515 48 HEGLIKAFAIVKKAAALANTDVGR-LELNKGGAIAEAAQEILDGKWHDHFIVDPIQ-GGAGTSMNMNANEVIANRALELL 125 (479)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCCCCccc-CCCcccccchHHHHHHHHHHHHh
Confidence 366788899999 99999999999 9999999999998654111110 0011 1111 2 22577788999
Q ss_pred Ccc-cC--------ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RKA-SS--------IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~~-~~--------~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+. |+ +||+||||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 126 G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHl 195 (479)
T PRK14515 126 GMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHL 195 (479)
T ss_pred CcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhcc
Confidence 964 77 55599999999999999999999999999999999999999999999999999996
No 42
>KOG2700|consensus
Probab=99.80 E-value=1.1e-19 Score=148.06 Aligned_cols=133 Identities=45% Similarity=0.734 Sum_probs=124.5
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCC-CCCHHHHHHHHH--hcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCccc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGL-NITRDQIEELKD--NMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKAS 80 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi-~i~~~~a~~I~~--~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~ 80 (137)
..+||+.+++..|..+| .+|.+..++|+ +||+++++++.+ .++.+|+..+.+.+...+|||++.++.+.+.|+.+.
T Consensus 21 ~~~~s~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~l~~ee~r~~hdVmahvh~~~~~cp~aa 100 (481)
T KOG2700|consen 21 NPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALSPEEGRYRHDVMAHVHSFGELCPIAA 100 (481)
T ss_pred chhhhhhhhhhhhhHHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhhcChhhhhhcccHHHHHHHHHhhcchhc
Confidence 45789999999999999 88888888887 499999999998 557889999998999999999999999999998888
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+++|.|+||+++.|.+....+|++.+++++.|...++.|..++.+|++++|.||||+
T Consensus 101 giihlgatsc~vtdnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~ 157 (481)
T KOG2700|consen 101 GIIHLGATSCFVTDNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHL 157 (481)
T ss_pred ceEEeeeeeeeecCCccceechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccC
Confidence 899999999999999999999999999999999999999999999999999999995
No 43
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.49 E-value=1.4e-13 Score=104.34 Aligned_cols=70 Identities=31% Similarity=0.370 Sum_probs=61.9
Q ss_pred HHHHHHHHcCcc-cCcc-----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 68 HVHVYAEQCRKA-SSII-----HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 68 ~~~~l~~~~g~~-~~~l-----H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++..|...+|.. +++. |+|+||||+++|+.++++|+++..+.+.+..+..++..+|++|++++||||||+
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~ 91 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHL 91 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeeccccc
Confidence 455666666643 4444 999999999999999999999999999999999999999999999999999996
No 44
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=99.44 E-value=3.6e-13 Score=109.28 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHHHhHHh----hhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRAAAEEK----LTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~~~~~~----~~~hdv~a~~~~l~~~ 75 (137)
+...+.++.-++ |.|+++.++|. +|++.+++|..++++ |.+...+.+.. -+.++|++... .+.
T Consensus 40 p~~~I~Al~~lKkaaA~~N~~LG~-L~~~~a~aI~~Aadev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA--~e~ 116 (462)
T COG0114 40 PREIIRALGLLKKAAAQVNADLGL-LDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRA--SEL 116 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHH--HHH
Confidence 445577788888 99999999999 999999999988743 22222222221 12345555543 344
Q ss_pred cCc---------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK---------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~---------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|. ....|+.|.||||++.||+++..-.++ ..+++.|..|+++|.++|++|.+.+.+||||+
T Consensus 117 ~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHL 188 (462)
T COG0114 117 LGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHL 188 (462)
T ss_pred hCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccc
Confidence 552 146889999999999999999888887 68999999999999999999999999999996
No 45
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=105.76 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHHhh----hcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEEKL----TRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~~~----~~hdv~a~~~~l~~~ 75 (137)
-+..++.+.-|. |.|.+..++|. ||++.+++|.++|+++ -.+.++.+... +-+.|++... .|.
T Consensus 43 ~p~~i~a~~~VKKAaAlaN~elg~-l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~A--lE~ 119 (471)
T COG1027 43 VPEFIRAMAMVKKAAALANKELGA-LPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRA--LEL 119 (471)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhCC-CCHHHHHHHHHHHHHHHcCccccccceeccccCCCccccccHHHHHHHHH--HHH
Confidence 367789999999 99999999999 9999999999999653 11222222211 2335665544 455
Q ss_pred cCcc---------cCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRKA---------SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~~---------~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|.. ..+|+.+.|+||+..|+.++.+-..+..+++.+..|++++..+++++++.++|||||+
T Consensus 120 lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqL 190 (471)
T COG1027 120 LGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQL 190 (471)
T ss_pred hcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhh
Confidence 6632 3468899999999999999999999999999999999999999999999999999996
No 46
>KOG1317|consensus
Probab=98.24 E-value=2.7e-06 Score=68.31 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=84.7
Q ss_pred HHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHH--hh--hcCchHHHHHHHHHHcCc
Q psy6016 13 RINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEE--KL--TRHDVMAHVHVYAEQCRK 78 (137)
Q Consensus 13 ~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~--~~--~~hdv~a~~~~l~~~~g~ 78 (137)
-++++--+. |.|....+.|+ ++..+.+|.++++++ .+-.+..+. .. +.++|++.. -++.+|.
T Consensus 70 ii~AfGiLKkaaA~vN~~~GL--Dpkis~Ai~~AadeV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNr--AieilGg 145 (487)
T KOG1317|consen 70 IIQAFGILKKAAAEVNQEYGL--DPKISKAISQAADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNR--AIEILGG 145 (487)
T ss_pred HHHHHHHHHHHHHHHhHhhCC--ChHHHHHHHHHHHHHhcCcccccCceeEEecCCCccccCcHHHHHHHH--HHHHhcc
Confidence 355655666 99999999997 555666676665432 111111111 11 223444332 2444542
Q ss_pred --------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 --------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 --------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
...+++...||||...|++.+..--.+ ..+++.|..|.++|..++++++|.+.+||||.
T Consensus 146 ~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHt 213 (487)
T KOG1317|consen 146 KLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHT 213 (487)
T ss_pred cccCcccCCccccccccccCCccchHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 144677889999999999999887666 68999999999999999999999999999995
No 47
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=85.95 E-value=2.8 Score=25.54 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM 47 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~ 47 (137)
.+.++.+++.. ++..-..+.|. |+++.++.|.+.++
T Consensus 10 ~~l~~qm~e~kK~~idk~Ve~G~-iTqeqAd~ik~~id 46 (59)
T PF10925_consen 10 KALYKQMLELKKQIIDKYVEAGV-ITQEQADAIKKHID 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34678889999 99999999999 99999999998874
No 48
>COG2445 Uncharacterized conserved protein [Function unknown]
Probab=71.89 E-value=17 Score=25.83 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhc----------ccCCHHHHHhHHhhhcCchHHHHHHHHH
Q psy6016 24 LFCSQELGLNITRDQIEELKDNM----------MKLDLDRAAAEEKLTRHDVMAHVHVYAE 74 (137)
Q Consensus 24 a~al~~~Gi~i~~~~a~~I~~~l----------~~~~~~~~~~~~~~~~hdv~a~~~~l~~ 74 (137)
...|.+.|+ ||++.++.+.+.. ..+|.+.+.+.-++...++..|.+.+..
T Consensus 71 ~~~L~~~gv-i~~e~~e~L~~~~gfRN~lVH~Y~~vD~~~v~~~l~~~~~~~~~f~e~i~~ 130 (138)
T COG2445 71 IDILVEEGV-IPEEEAEELKKMVGFRNILVHRYWAVDPEKVYRSLKELLEDYENFLEEIRK 130 (138)
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677899 9999998887643 2467777776666655666666665555
No 49
>PRK08937 adenylosuccinate lyase; Provisional
Probab=63.70 E-value=6.5 Score=29.37 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELK 43 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~ 43 (137)
++++++.++|+ ||++++..|.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~ 22 (216)
T PRK08937 2 ALAEAQAELGV-IPKEDIAEIV 22 (216)
T ss_pred chHHHHHHcCC-CCHHHHHHHH
Confidence 57899999999 9999998873
No 50
>KOG4797|consensus
Probab=56.27 E-value=55 Score=22.53 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6016 90 CYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKF 126 (137)
Q Consensus 90 nDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 126 (137)
-|.+-|-++..+|+..+.+.+.+.+|.+....+-+++
T Consensus 54 MDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 54 MDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888899999999999999999999988887776665
No 51
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=49.82 E-value=31 Score=17.89 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhc
Q psy6016 23 ILFCSQELGLNITRDQIEELKDNM 46 (137)
Q Consensus 23 ~a~al~~~Gi~i~~~~a~~I~~~l 46 (137)
-.+.+...|+ |++++.....+.+
T Consensus 7 ~L~~l~~~G~-IseeEy~~~k~~l 29 (31)
T PF09851_consen 7 KLKELYDKGE-ISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3566778899 9999998877654
No 52
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=44.28 E-value=57 Score=21.18 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=35.6
Q ss_pred HHHHHHHHHH--HHHHHHhhcCCCCCHHHHHHHHHhcccCCHH-H-HHhHHhhhcCchHHHHHHHHH
Q psy6016 12 GRINKVIKVY--SILFCSQELGLNITRDQIEELKDNMMKLDLD-R-AAAEEKLTRHDVMAHVHVYAE 74 (137)
Q Consensus 12 ~~~~~~~~ve--A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~-~-~~~~~~~~~hdv~a~~~~l~~ 74 (137)
+|....-++. -+...+.+.|+ |+.+..+.|...-..-+.. . +.....+..+-+..|...|.+
T Consensus 6 ~R~~L~~dL~v~~ild~L~~~gv-lt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 6 HRQALEKDIKTSYIMDHMISDGV-LTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred HHHHHHHHccHHHHHHHHHhcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4444444444 56778888999 9999999998753221111 1 222333434444555666654
No 53
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=37.65 E-value=1e+02 Score=19.20 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHhc
Q psy6016 22 SILFCSQELGLN-ITRDQIEELKDNM 46 (137)
Q Consensus 22 A~a~al~~~Gi~-i~~~~a~~I~~~l 46 (137)
+.++.+...|.+ +.+++.+.+.+.+
T Consensus 11 ~Vaqil~~~Gf~~~~~sale~ltdi~ 36 (77)
T smart00576 11 AVAQILESAGFDSFQESALETLTDIL 36 (77)
T ss_pred HHHHHHHHcCccccCHHHHHHHHHHH
Confidence 677777777764 6666655555443
No 54
>KOG2199|consensus
Probab=35.00 E-value=2.4e+02 Score=23.92 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhcccCC--H----HHHHhHHhh----hcCchHHHHHHHHHHcCcccCccccCCChhhHHHHHHHHHHHH
Q psy6016 34 ITRDQIEELKDNMMKLD--L----DRAAAEEKL----TRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRD 103 (137)
Q Consensus 34 i~~~~a~~I~~~l~~~~--~----~~~~~~~~~----~~hdv~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~~L~lr~ 103 (137)
++.+.-.-|...|+.+. + +-++...++ +.|-++--+..+-.....-|+.+|.+.||.|..+--.+|.--.
T Consensus 21 nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred cccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 55666667777775431 1 123333332 3443333333333333345789999999999988877776534
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6016 104 AFDILIPKLATCISHLAF 121 (137)
Q Consensus 104 ~l~~l~~~l~~l~~~L~~ 121 (137)
+-..+.+++..++.-+.+
T Consensus 101 ~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 101 AHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 445555665555554443
No 55
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=31.41 E-value=1.1e+02 Score=21.62 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhcCCC--------CCHHHHHHHHHhcccC
Q psy6016 14 INKVIKVYSILFCSQELGLN--------ITRDQIEELKDNMMKL 49 (137)
Q Consensus 14 ~~~~~~veA~a~al~~~Gi~--------i~~~~a~~I~~~l~~~ 49 (137)
+..+.+++.+.+.|.++||. ||..+++++.+.+.++
T Consensus 74 ~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~ef 117 (132)
T COG1908 74 YKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEF 117 (132)
T ss_pred hHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHH
Confidence 55667777888889999982 5566666665554433
No 56
>PF13265 DUF4056: Protein of unknown function (DUF4056)
Probab=31.17 E-value=1.4e+02 Score=23.76 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=15.1
Q ss_pred ccChHHHHHHHHHHH-HHHHHHh
Q psy6016 7 FQSYSGRINKVIKVY-SILFCSQ 28 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve-A~a~al~ 28 (137)
-||+++-|.-++--. |+..-+.
T Consensus 174 AFSpEDLYSNlLGArLA~~lil~ 196 (270)
T PF13265_consen 174 AFSPEDLYSNLLGARLALSLILQ 196 (270)
T ss_pred cCCHHHhhhhHHHHHHHHHHHHc
Confidence 479999888887666 5554443
No 57
>PF01934 DUF86: Protein of unknown function DUF86; InterPro: IPR008201 This entry describes prokaryotic proteins of unknown function.; PDB: 1YLM_A.
Probab=29.88 E-value=1.7e+02 Score=19.29 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=13.6
Q ss_pred HHhhcCCCCCHHHHHHHHHhc
Q psy6016 26 CSQELGLNITRDQIEELKDNM 46 (137)
Q Consensus 26 al~~~Gi~i~~~~a~~I~~~l 46 (137)
.|++.|+ +|.+.+..+.+..
T Consensus 64 ~L~~~~i-i~~~~~~~l~~~~ 83 (119)
T PF01934_consen 64 ILAEHGI-ISEEPAEPLRKMV 83 (119)
T ss_dssp HHHHTTS-S-HHHHHHHHHHH
T ss_pred HHHHcCC-ccchhHHHHHHHH
Confidence 4567788 8888887776543
No 58
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=29.55 E-value=2.7e+02 Score=21.69 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCC------CCHHHHHHHHHhcccC
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLN------ITRDQIEELKDNMMKL 49 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~------i~~~~a~~I~~~l~~~ 49 (137)
-|+..++-+-++. ..=+.+.+.|+| +|.+.++.|.+.++.+
T Consensus 46 ~dp~~L~~f~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i 93 (257)
T PF11348_consen 46 CDPDALKPFSKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELEDI 93 (257)
T ss_pred eChHHcCHHHHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHHH
Confidence 3444566667777 555667778987 9999999998887554
No 59
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=28.91 E-value=87 Score=23.67 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.1
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHhhcCC
Q psy6016 4 KGTFQSYSGRINKVIKVYSILFCSQELGL 32 (137)
Q Consensus 4 ~~~~~s~~~~~~~~~~veA~a~al~~~Gi 32 (137)
++.-||+++|..-++++--.|+-+.+.|+
T Consensus 68 ~dLgFs~edR~eniRRvaevAkll~daG~ 96 (197)
T COG0529 68 RDLGFSREDRIENIRRVAEVAKLLADAGL 96 (197)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHCCe
Confidence 56779999999999999888899999998
No 60
>KOG3341|consensus
Probab=28.44 E-value=79 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy6016 103 DAFDILIPKLATCISHLAFFANKFKDLP 130 (137)
Q Consensus 103 ~~l~~l~~~l~~l~~~L~~~A~~~~~t~ 130 (137)
+.+.++.+.|..+.+.|..+|.+|++-+
T Consensus 29 ~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei 56 (249)
T KOG3341|consen 29 QQLVQMSKQLEVFQEALEEFARKHKTEI 56 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999998643
No 61
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=28.39 E-value=1.1e+02 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRA 54 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~ 54 (137)
.|-.+|.+.|- ||+++.+.|.+.+ .+...++
T Consensus 18 ~L~~~Q~~~g~-i~~~~~~~iA~~l-~i~~~~v 48 (145)
T PF01257_consen 18 ILHEVQEEYGY-IPEEALEEIAEAL-GIPPAEV 48 (145)
T ss_dssp HHHHHHHHHSS---HHHHHHHHHHH-TS-HHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHH-CCCHHHH
Confidence 55667788999 9999999999887 4444444
No 62
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=28.36 E-value=1.4e+02 Score=21.12 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRA 54 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~ 54 (137)
.|-..|.+.|- ||+++.+.|.+.+ .+...++
T Consensus 21 ~L~~vQ~~~G~-i~~~~~~~iA~~l-~~~~~~v 51 (148)
T TIGR01958 21 ALMIAQEQKGW-VTPEAIAAVAEML-GIPPVWV 51 (148)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHh-CcCHHHH
Confidence 56677889999 9999999998887 4544443
No 63
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.35 E-value=1.6e+02 Score=18.66 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.3
Q ss_pred hHHHHHHHHHH---HHHHHHHhhcCCCCCHHHHHHHHHh
Q psy6016 10 YSGRINKVIKV---YSILFCSQELGLNITRDQIEELKDN 45 (137)
Q Consensus 10 ~~~~~~~~~~v---eA~a~al~~~Gi~i~~~~a~~I~~~ 45 (137)
+++|-+..-+| +.+...|.+.|+ |+++..+.|.+.
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~V-it~e~~~~I~a~ 41 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKKV-ITQEQYSEVRAE 41 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCC-CCHHHHHHHHcC
Confidence 45554444444 378889999999 999999999875
No 64
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=28.32 E-value=1.1e+02 Score=19.56 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=16.1
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATC 115 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l 115 (137)
|+|+|+. .++|+++..-++.+..+
T Consensus 26 ~tgrtka--------yyvrEaIE~~ieemED~ 49 (80)
T COG4710 26 NTGRTKA--------YYVREAIEAYIEEMEDF 49 (80)
T ss_pred hcCCchh--------HHHHHHHHHHHHHHHHH
Confidence 6788874 46677777666666554
No 65
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=27.87 E-value=1.4e+02 Score=21.26 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRA 54 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~ 54 (137)
.|-..|.+.|- ||++..+.|.+.+ ++...++
T Consensus 27 ~L~~vQ~~~g~-ip~~~~~~iA~~l-~v~~~~v 57 (154)
T PRK07539 27 ALKIVQEQRGW-VPDEAIEAVADYL-GMPAIDV 57 (154)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHh-CcCHHHH
Confidence 55567788999 9999999998887 4554444
No 66
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.60 E-value=91 Score=16.32 Aligned_cols=18 Identities=11% Similarity=0.002 Sum_probs=10.8
Q ss_pred cCCChhhHHHHHHHHHHH
Q psy6016 85 LGATSCYVGDNTDLIQIR 102 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr 102 (137)
.|.|+++++..+..-++.
T Consensus 21 ~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 21 LGRSRSELIREAIREYLE 38 (39)
T ss_dssp HTSSHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHh
Confidence 356666666666655544
No 67
>PRK14847 hypothetical protein; Provisional
Probab=25.75 E-value=70 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.1
Q ss_pred cCccccCCChhhHHH
Q psy6016 80 SSIIHLGATSCYVGD 94 (137)
Q Consensus 80 ~~~lH~G~TsnDi~d 94 (137)
..+||...+++|+.-
T Consensus 124 ~~~Vhi~~p~Sd~h~ 138 (333)
T PRK14847 124 RAIVHLYNPIAPQWR 138 (333)
T ss_pred CCEEEEEecCCHHHH
Confidence 578999999998753
No 68
>PF11486 DUF3212: Protein of unknown function (DUF3212); InterPro: IPR021579 Members in this family of proteins are annotated as YfmB however currently no function for this protein is known. ; PDB: 2EUC_B.
Probab=24.76 E-value=48 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.003 Sum_probs=9.7
Q ss_pred cccChHHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY 21 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve 21 (137)
++||++..|++|+--.
T Consensus 2 ~yfspeqq~nawvvsd 17 (120)
T PF11486_consen 2 QYFSPEQQYNAWVVSD 17 (120)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred CcCCHHHHcchHHHHH
Confidence 5799999999996433
No 69
>TIGR03161 ribazole_CobZ alpha-ribazole phosphatase CobZ. Sequences in the seed alignment were the experimentally characterized CobZ of the methanogenic archaeon Methanosarcina mazei, and other archaeal proteins found similarly next to or very near to other cobalamin biosynthesis genes. CobZ replaces the alpha-ribazole-phosphate phosphatase (EC 3.1.3.73) called CobC in analogous bacterial pathways for cobalamin biosynthesis under anaerobic conditions.
Probab=24.54 E-value=86 Score=22.42 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=15.2
Q ss_pred cCCChhhHHHHHHHHHHH
Q psy6016 85 LGATSCYVGDNTDLIQIR 102 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr 102 (137)
.|.|.+|++++++.+++.
T Consensus 8 rGVtl~dia~~~~~l~~q 25 (140)
T TIGR03161 8 EGISLEGLVETAMELYVG 25 (140)
T ss_pred cCCCHHHHHHHHHHHhcC
Confidence 489999999999888665
No 70
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.35 E-value=2e+02 Score=18.40 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHHHH--HHHHHHhhcCCCCCHHHHHHHHHhcccCCH-HH-HHhHHhhhcCchHHHHHHHHH
Q psy6016 12 GRINKVIKVY--SILFCSQELGLNITRDQIEELKDNMMKLDL-DR-AAAEEKLTRHDVMAHVHVYAE 74 (137)
Q Consensus 12 ~~~~~~~~ve--A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~-~~-~~~~~~~~~hdv~a~~~~l~~ 74 (137)
++....-++. -+...|.+.|| ++.+..+.|.+.-...+. .. +...+....+-...|...|.+
T Consensus 8 ~r~~Lv~~l~~~~v~~~L~~~~V-lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 8 HRARLVEELQPKYLWDHLLSRGV-FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRE 73 (84)
T ss_pred hHHHHHHHCCHHHHHHHHHhcCC-CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3333334444 67788889999 999999999864322111 11 122233333444566666665
No 71
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=24.18 E-value=1.6e+02 Score=20.54 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHhhcCCCCCHHHHHHHHHhc
Q psy6016 25 FCSQELGLNITRDQIEELKDNM 46 (137)
Q Consensus 25 ~al~~~Gi~i~~~~a~~I~~~l 46 (137)
.++.+.|+ +|++.++.+.++.
T Consensus 69 ~~L~~~g~-l~~~~~~~l~~A~ 89 (145)
T PF10335_consen 69 EALAEAGV-LSPDDAEDLIEAF 89 (145)
T ss_pred HHHHHcCC-CCHHHHHHHHHHH
Confidence 45556677 7777777776664
No 72
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=23.85 E-value=1.9e+02 Score=20.79 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRA 54 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~ 54 (137)
.|-.+|.+.|- ||+++.+.|.+.+ .+.+.++
T Consensus 28 ~L~~vQ~~~G~-Ip~e~~~~iA~~l-~v~~~~V 58 (156)
T PRK05988 28 ILHAIQDEFGY-VPEDAVPVIAEAL-NLSRAEV 58 (156)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHh-CCCHHHH
Confidence 56677789999 9999999999887 3444443
No 73
>PF14043 WVELL: WVELL protein
Probab=22.27 E-value=2.2e+02 Score=18.13 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=35.5
Q ss_pred HHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHH---HHHHHHHHcCcccCccccCCChh
Q psy6016 26 CSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMA---HVHVYAEQCRKASSIIHLGATSC 90 (137)
Q Consensus 26 al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a---~~~~l~~~~g~~~~~lH~G~Tsn 90 (137)
-|.+..- ++.+.|..=.+.| ++......++.|+++.. -++.+++.+...|.++|--+++|
T Consensus 11 LlekN~~-Ls~~qArtWVElL----WeDFEsTyAKAG~~Y~G~e~te~iV~qwI~~yG~~LH~f~~~n 73 (75)
T PF14043_consen 11 LLEKNPM-LSYEQARTWVELL----WEDFESTYAKAGRPYQGEEMTERIVRQWIENYGSKLHEFQAKN 73 (75)
T ss_pred HHHhCCC-CCHHHHHHHHHHH----HHHHHHHHHHcCCccCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566 8888877766665 33334444455555521 13345666666788888766655
No 74
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=21.37 E-value=1.8e+02 Score=21.75 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=25.3
Q ss_pred hcCchHHHHHHHHHHcCcccCccccCCChhhHHHHHHHHHHH
Q psy6016 61 TRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIR 102 (137)
Q Consensus 61 ~~hdv~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~~L~lr 102 (137)
+.+.++.|++.+.++ |.|.+.+|++..|-+.|.+
T Consensus 82 TnnaYLNFLReFRrk--------h~~L~p~dlI~~AAraW~r 115 (183)
T PF06382_consen 82 TNNAYLNFLREFRRK--------HCGLSPQDLIQRAARAWCR 115 (183)
T ss_pred cchHHHHHHHHHHHH--------ccCCCHHHHHHHHHHHHHh
Confidence 344455565555554 7899999999999999976
No 75
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=21.37 E-value=2.2e+02 Score=20.83 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDR 53 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~ 53 (137)
.|-..|.+.|. ||+++.+.|.+.+ .+...+
T Consensus 41 ~L~~iQ~~~Gy-Ip~e~~~~iA~~l-~v~~a~ 70 (169)
T PRK07571 41 VLHKAQELFGY-LERDLLLYVARQL-KLPLSR 70 (169)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHh-CcCHHH
Confidence 55567788999 9999999999887 344333
No 76
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=20.96 E-value=2.6e+02 Score=19.98 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy6016 101 IRDAFDILIPKLATCISHLAFFANKFKDLPTLGF 134 (137)
Q Consensus 101 lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~gr 134 (137)
.|+.+..++..+-.+-..+..++..+..++-|.|
T Consensus 72 tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~pd~ 105 (147)
T PF07328_consen 72 TRQKLEDILRSIGGLATNINQILKAANRTPRPDY 105 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH
Confidence 4556677777778888888888888888887765
No 77
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.61 E-value=3.2e+02 Score=19.27 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6016 34 ITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLA 113 (137)
Q Consensus 34 i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~ 113 (137)
=|+++.+.|.+.+..-++.... -.+.+...+.+.|| ..+|.-.+|.+.++.-..+.-...-..+..++.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l--------~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil 102 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQL--------RALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLR 102 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHH
Confidence 5566666666655332221110 01233344444444 588888889999888777766654456666666
Q ss_pred HHHHHHH
Q psy6016 114 TCISHLA 120 (137)
Q Consensus 114 ~l~~~L~ 120 (137)
.++..+.
T Consensus 103 ~li~~W~ 109 (144)
T cd03568 103 EVVKQWA 109 (144)
T ss_pred HHHHHHH
Confidence 6666554
No 78
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=20.20 E-value=1.7e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=-0.100 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHH
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQ 38 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~ 38 (137)
+...-++.|.+-| .....+.+.|+|.|.-.
T Consensus 64 ~~~~~~~~wa~kE~r~L~rl~~~Gv~vP~pi 94 (197)
T cd05146 64 NPRKIIRMWAEKEMHNLKRMQKAGIPCPEVV 94 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCeEE
Confidence 4555688899999 77788999999766543
No 79
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.09 E-value=3.5e+02 Score=19.57 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhccc
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMK 48 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~ 48 (137)
+.++.|.+.|+ |++.++.|.+++..
T Consensus 6 ~~v~~Le~~Gf--t~~QAe~i~~~l~~ 30 (177)
T PF07798_consen 6 KFVKRLEAAGF--TEEQAEAIMKALRE 30 (177)
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 45677877785 89999999887643
No 80
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.01 E-value=26 Score=21.35 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6016 91 YVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKF 126 (137)
Q Consensus 91 Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 126 (137)
|.|-|-+...+|+..+.+.+.+..|.+....+-.++
T Consensus 2 dLVKtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 2 DLVKTHLMYAVREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp -SCCCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777766665554
Done!