Query psy6016
Match_columns 137
No_of_seqs 169 out of 1192
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eei_A Adenylosuccinate lyase; 100.0 7.3E-36 2.5E-40 245.7 14.5 129 6-137 12-142 (438)
2 2j91_A Adenylosuccinate lyase; 100.0 3.3E-34 1.1E-38 239.2 15.9 132 6-137 50-182 (503)
3 1yis_A Adenylosuccinate lyase; 100.0 7E-34 2.4E-38 236.0 16.3 132 6-137 23-156 (478)
4 1c3c_A Protein (adenylosuccina 100.0 5.6E-34 1.9E-38 233.9 15.0 130 6-137 11-141 (429)
5 3c8t_A Fumarate lyase; structu 100.0 1.6E-33 5.5E-38 232.5 16.1 131 6-137 19-152 (451)
6 2pfm_A Adenylosuccinate lyase; 100.0 1.6E-33 5.6E-38 232.0 15.5 130 6-137 21-153 (444)
7 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 3.4E-33 1.2E-37 230.6 16.3 131 6-137 19-158 (454)
8 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 3.8E-33 1.3E-37 224.6 15.9 131 6-137 22-156 (359)
9 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 7.1E-33 2.4E-37 228.5 16.1 131 6-137 17-154 (450)
10 1dof_A Adenylosuccinate lyase; 100.0 5.7E-33 2E-37 226.4 12.0 127 6-137 17-144 (403)
11 3bhg_A Adenylosuccinate lyase; 100.0 1.4E-32 4.9E-37 227.2 14.1 133 5-137 27-175 (459)
12 2qga_B Adenylosuccinate lyase; 100.0 9.3E-33 3.2E-37 228.7 11.4 132 5-137 23-171 (465)
13 2ptr_A Adenylosuccinate lyase; 100.0 2.5E-30 8.4E-35 214.0 14.9 132 6-137 25-172 (462)
14 1k7w_A Delta 2 crystallin; eye 100.0 1E-30 3.5E-35 216.6 11.2 126 10-137 33-163 (468)
15 2e9f_A Argininosuccinate lyase 100.0 6.8E-29 2.3E-33 205.4 10.8 125 11-137 29-160 (462)
16 1tj7_A Argininosuccinate lyase 100.0 2.3E-28 7.7E-33 202.0 12.2 125 11-137 27-157 (457)
17 1vdk_A Fumarase C, fumarate hy 99.9 3.3E-26 1.1E-30 189.5 13.0 125 10-137 42-189 (466)
18 1fur_A Fumarase C, FUMC; hydro 99.9 1.8E-25 6E-30 185.2 14.4 125 10-137 41-189 (467)
19 1jsw_A L-aspartase, L-aspartat 99.9 5.6E-26 1.9E-30 188.6 11.0 125 7-137 41-192 (478)
20 1yfm_A Fumarase, YFUM; lyase, 99.9 3.5E-25 1.2E-29 184.2 11.9 125 10-137 67-214 (488)
21 3r6q_A Aspartase; aspartate am 99.9 3.8E-25 1.3E-29 183.2 10.5 125 10-137 42-189 (468)
22 3ocf_A Fumarate lyase:delta cr 99.9 9.6E-25 3.3E-29 181.1 10.3 124 11-137 63-209 (478)
23 4adm_A Fumarase C, fumarate hy 99.9 1.6E-24 5.5E-29 180.4 10.0 123 10-137 69-210 (495)
24 4hgv_A Fumarase C, fumarate hy 99.9 4.1E-22 1.4E-26 166.0 10.0 125 10-137 73-221 (495)
25 3gtd_A Fumarase C, fumarate hy 99.9 1.5E-21 5.1E-26 162.0 11.2 126 9-137 61-210 (482)
26 3e04_A Fumarase, fumarate hydr 99.8 6.8E-20 2.3E-24 152.2 10.3 124 10-137 69-216 (490)
27 3kh1_A Predicted metal-depende 54.6 57 0.0019 23.4 8.5 94 17-117 96-190 (200)
28 1ugp_A NitrIle hydratase alpha 39.1 59 0.002 23.6 5.1 38 9-47 8-46 (203)
29 1u5t_A Appears to BE functiona 34.3 51 0.0017 24.5 4.3 28 103-130 27-54 (233)
30 2gpe_A Bifunctional protein PU 31.4 42 0.0014 18.1 2.7 19 85-103 25-43 (52)
31 1ylm_A Hypothetical protein BS 29.5 1.2E+02 0.0041 19.8 5.8 47 26-73 74-130 (144)
32 1it2_A Hemoglobin; hagfish, de 28.9 1.3E+02 0.0043 19.8 6.8 56 72-128 41-105 (146)
33 2euc_A Hypothetical protein YF 25.2 36 0.0012 22.5 1.8 16 6-21 2-17 (130)
34 2h8b_A Insulin-like 3; insulin 24.4 28 0.00095 16.8 0.9 9 85-93 13-21 (26)
35 1cg5_A Protein (hemoglobin); o 23.8 1.6E+02 0.0053 19.2 6.9 57 72-128 32-90 (141)
36 2lnd_A De novo designed protei 23.7 56 0.0019 20.5 2.4 16 80-95 28-43 (112)
37 2lf6_A Effector protein hopab1 23.6 60 0.0021 20.8 2.6 42 33-77 53-94 (101)
38 3gud_A NECK appendage protein; 23.1 28 0.00095 23.6 1.0 18 77-95 38-55 (129)
39 2r80_B Hemoglobin subunit beta 22.5 1.7E+02 0.0058 19.1 8.2 85 34-128 3-94 (146)
40 3d1k_A Hemoglobin subunit alph 21.7 1.7E+02 0.0059 18.9 7.6 56 73-128 33-90 (142)
41 1gcv_B Hemoglobin; oxygen stor 21.1 1.8E+02 0.0062 18.9 7.4 81 34-129 3-85 (136)
42 1b0b_A Hemoglobin; hemoprotein 20.9 1.6E+02 0.0054 19.0 4.6 33 96-128 63-98 (142)
No 1
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=7.3e-36 Score=245.71 Aligned_cols=129 Identities=25% Similarity=0.365 Sum_probs=125.7
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcc-cCcc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA-SSII 83 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~-~~~l 83 (137)
.+|||+++++.|++|| |+++++++ |+ ||++++++|.+++ ++|++++.+.+..++|||+++|+.|++++|+. ++||
T Consensus 12 ~~fs~~~~~~~~l~ve~Ala~a~~~-Gl-Ip~~~~~~i~~~~-~~d~~~i~~~e~~~~hdV~a~~~~l~e~~g~~~~~~i 88 (438)
T 4eei_A 12 KIWADENKYAKMLEVELAILEALED-RM-VPKGTAAEIRARA-QIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFF 88 (438)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHGGG-TT-SCTTHHHHHHHHC-CCCHHHHHHHHHHHSCHHHHHHHHHHTTSCTTTTTTT
T ss_pred HHcChHHHHHHHHHHHHHHHHHHhc-CC-CCHHHHHHHHhhC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHcCHHhhccc
Confidence 5899999999999999 99999999 99 9999999999987 69999999999999999999999999999987 9999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|+++|||||||+
T Consensus 89 H~G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 142 (438)
T 4eei_A 89 HFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHG 142 (438)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999997
No 2
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=3.3e-34 Score=239.24 Aligned_cols=132 Identities=53% Similarity=0.781 Sum_probs=128.3
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+||++++++.|+++| |++++++++|+|||++++++|.+++++++.+.+...+..++|||+++++.|++++|+.++|||
T Consensus 50 ~~fS~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~~e~~~~hDV~a~v~~l~e~~g~~~~~iH 129 (503)
T 2j91_A 50 FVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIH 129 (503)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHHHHHHHSCHHHHHHHHHHHHCTTTGGGTT
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhhhhhhcCCcHHHHHHHHHHHhcccccccc
Confidence 5799999999999999 999999999999999999999999999999988888889999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||++||+..|++|+++..+++.|..++++|.++|++|+++|||||||+
T Consensus 130 ~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHl 182 (503)
T 2j91_A 130 LGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHF 182 (503)
T ss_dssp TTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 3
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-34 Score=236.04 Aligned_cols=132 Identities=40% Similarity=0.618 Sum_probs=128.0
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCC-CCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCcc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLN-ITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSII 83 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~-i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~l 83 (137)
.+||++++++.|+++| |++++++++|+| ||+++++.|.+++++++.+.+...+..++|||+++++.|++++|+.++|+
T Consensus 23 ~~fs~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~~e~~~~~DV~a~v~~l~e~~g~~~~~i 102 (478)
T 1yis_A 23 SILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGII 102 (478)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHHHHHHSSCHHHHHHHHHHHHCTTTGGGT
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhhHHHhcCCcHHHHHHHHHHhhhhchhhe
Confidence 5799999999999999 999999999998 99999999999999999998888888899999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+||||++||+..|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 103 H~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHl 156 (478)
T 1yis_A 103 HLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHY 156 (478)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred eCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCC
Confidence 999999999999999999999999999999999999999999999999999997
No 4
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=5.6e-34 Score=233.93 Aligned_cols=130 Identities=28% Similarity=0.364 Sum_probs=126.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|+++| |+|+++.++|+ ||++.+++|.+++ ++|++.+.+++..+.|||+++++.|.+++|+.|+|||
T Consensus 11 ~~~sd~~~i~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dVia~~~~l~e~~g~~g~~vH 88 (429)
T 1c3c_A 11 DLWTEEAKYRRWLEVELAVTRAYEELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFH 88 (429)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTS-SCTTHHHHHHHHC-CCCHHHHHHHHHHHCCHHHHHHHHHHHHHGGGGGGTT
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhC-CCCHHHHHHHHhccCCChHHHHHHHHHHcCccccccc
Confidence 5899999999999999 99999999999 9999999999998 8899999988888999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||++|+++|++|+++..+++.|..++++|.++|++|+++|||||||+
T Consensus 89 ~g~SsnD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHl 141 (429)
T 1c3c_A 89 YGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHG 141 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCC
Confidence 99999999999999999999999999999999999999999999999999997
No 5
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=1.6e-33 Score=232.47 Aligned_cols=131 Identities=21% Similarity=0.352 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc--cCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~--~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|+++| |+|+++.++|+ ||++.+++|.++++ ++|++.+..++..+.|||+++++.|.+++|+.|+|
T Consensus 19 ~~~sd~~~i~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~~~~~~~~~~~~~~~~~~dVia~~~~l~e~~g~~g~~ 97 (451)
T 3c8t_A 19 ELFSAQSFISRCVETEVALARAQARLGI-IPEDAAAGITAAARTFAPEMERLRDDTEIVGYPILPLVEQLSAHAGEAGKY 97 (451)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHCCCCHHHHHHHHHHHSSSHHHHHHHHHHHHGGGGGG
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHhhhcCCCHHHHHHHhhcCCCcHHHHHHHHHHHccccccc
Confidence 5799999999999999 99999999999 99999999999985 78888888888889999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
||+|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 98 vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 152 (451)
T 3c8t_A 98 LHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHL 152 (451)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred ccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 6
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.6e-33 Score=232.03 Aligned_cols=130 Identities=26% Similarity=0.305 Sum_probs=125.6
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHc--CcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQC--RKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~--g~~~~~ 82 (137)
.+|||+++++.|++|| |+|+++.++|+ ||++.+++|.+++ ++|++.+..++..+.|||+++++.|.+++ |+.|+|
T Consensus 21 ~i~sd~~~i~~~~~v~~A~a~a~~~~G~-i~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dVia~~~~l~e~~g~g~~g~~ 98 (444)
T 2pfm_A 21 AIWTEENKFKAWLEVEILACEAWAELGD-IPKEDVKKIREHA-SFDIDRIYEIEKETRHDVVAFTRAVSETPALGEERKW 98 (444)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHC-CCCHHHHHHHHHHHCCHHHHHHHHHHTCTTCCGGGGG
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhC-CCCHHHHHHHhccCCCCHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999 99999999999 9999999999998 88999999888889999999999999999 667999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
||+|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 99 vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 153 (444)
T 2pfm_A 99 VHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHG 153 (444)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred ccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 7
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=3.4e-33 Score=230.63 Aligned_cols=131 Identities=20% Similarity=0.285 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc----cCCHHHHHhHHhhhcCchHHHHHHHHHHc----
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM----KLDLDRAAAEEKLTRHDVMAHVHVYAEQC---- 76 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~----~~~~~~~~~~~~~~~hdv~a~~~~l~~~~---- 76 (137)
.+|||+++++.|+++| |+|+++.++|+ ||++.+++|.++++ ++|...+..++..+.|||+++++.|.+++
T Consensus 19 ~~~sd~~~i~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~dVia~~~~l~e~~g~~~ 97 (454)
T 1q5n_A 19 EIFSDRALVSYMVEAEVALAQAQAQVGV-IPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDAD 97 (454)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhhhcCCHHHHHHHhhccCCcHHHHHHHHHHHhcccc
Confidence 5799999999999999 99999999999 99999999999987 78888888888889999999999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+.++|||+|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 98 g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 158 (454)
T 1q5n_A 98 EDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 158 (454)
T ss_dssp TTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccC
Confidence 7779999999999999999999999999999999999999999999999999999999997
No 8
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=3.8e-33 Score=224.63 Aligned_cols=131 Identities=19% Similarity=0.251 Sum_probs=123.8
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+||++++++.|++|| |+|++++++|+ ||++++++|.+++++ ++++.+...+..++|++.+++..|.+.+|+ .++
T Consensus 22 ~~fs~~~~i~~~~~ve~A~a~a~~~~G~-i~~~~a~~I~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 100 (359)
T 2fel_A 22 ELFSAKADIDAMIRFETALAQAEAEASI-FADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAAD 100 (359)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHTCCCCHHHHHHHHHHHSSSHHHHHHHHHTTSCGGGGG
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhccccHHHHHhhccccCCcHHHHHHHHHHHcCccccc
Confidence 5899999999999999 99999999999 999999999999865 467777777788899999999999999985 699
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||+|+|||||+||+++|++|+++..+++.|..++++|.++|++|+++|||||||+
T Consensus 101 ~vH~G~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHl 156 (359)
T 2fel_A 101 KVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRM 156 (359)
T ss_dssp GTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hhcCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccC
Confidence 99999999999999999999999999999999999999999999999999999997
No 9
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=7.1e-33 Score=228.54 Aligned_cols=131 Identities=22% Similarity=0.290 Sum_probs=125.6
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc--cCCHHHHHhHHhhhcCchHHHHHHHHHHcC---cc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAHVHVYAEQCR---KA 79 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~--~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g---~~ 79 (137)
.+|||+++++.|++|| |+|+++.++|+ ||++.+++|.++++ ++|++.+...+..+.|||+++++.|++++| +.
T Consensus 17 ~i~s~~~~i~~~~~v~~A~a~a~~~~G~-i~~~~a~~I~~a~~~~~f~~~~~~~~~~~~~~dV~a~~~~l~e~~g~~~~~ 95 (450)
T 1re5_A 17 EIFSDRGRLQGMLDFEAALARAEASAGL-VPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPE 95 (450)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHTTTS-SCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHCGG
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcCCCCHHHHHHHHhccCccHHHHHHHHHHHhCCCCCc
Confidence 5899999999999999 99999999999 99999999999984 688888888888899999999999999999 76
Q ss_pred -cCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 80 -SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 80 -~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++|||+|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 96 ~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 154 (450)
T 1re5_A 96 AERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWL 154 (450)
T ss_dssp GGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred ccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 10
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=5.7e-33 Score=226.44 Aligned_cols=127 Identities=26% Similarity=0.325 Sum_probs=114.9
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|+++| |+|+++.++|+ ||++.+++|.++ ++|++.+..++..+.|||+++++.|.+++| |+|||
T Consensus 17 ~i~sd~~~i~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a--~~d~~~~~~~~~~~~~dVia~~~~l~e~~G--g~~vH 91 (403)
T 1dof_A 17 RLFTNEAIINAYLEVERALVCALEELGV-AERGCCEKVNKA--SVSADEVYRLERETGHDILSLVLLLEQKSG--CRYVH 91 (403)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHTTS-SCTTHHHHHHHC--CCCTTTC--------CHHHHHHHHHHHHHC--CSCTT
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHC--CCCHHHHHHHhhccCCcHHHHHHHHHHHcC--CCccc
Confidence 5899999999999999 99999999999 999999999988 677777777777889999999999999998 89999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||++|+++|++|+++..+++.|..++++|.++|++|+++|||||||+
T Consensus 92 ~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 144 (403)
T 1dof_A 92 YGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHG 144 (403)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 11
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.4e-32 Score=227.23 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=123.0
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhc-CCC-C---CHHHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQEL-GLN-I---TRDQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~-Gi~-i---~~~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
..+|||+++++.|+++| ||+++|+++ |+| | |+++++.|.+.++++ |++.+.+.+..++|||+++|+.|+++
T Consensus 27 ~~~fsd~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~~~~~~~e~~~~~Dv~a~e~~l~e~ 106 (459)
T 3bhg_A 27 SPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDK 106 (459)
T ss_dssp TTTSSHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 35799999999999999 999999999 774 4 489999999998888 66677778888999999999999999
Q ss_pred cCc------ccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK------ASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~------~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+ .++|||+|+|||||++|+++|++|+++. .+++.|..++++|.++|++|+++|||||||+
T Consensus 107 ~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 175 (459)
T 3bhg_A 107 FQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHG 175 (459)
T ss_dssp HTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 972 5899999999999999999999999998 7999999999999999999999999999997
No 12
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=99.98 E-value=9.3e-33 Score=228.68 Aligned_cols=132 Identities=23% Similarity=0.225 Sum_probs=120.3
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhc-CCCCCHHHHHHHHH---hcccC---CHHHHHhHHhhhcCchHHHHHHHHHHc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQEL-GLNITRDQIEELKD---NMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQC 76 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~-Gi~i~~~~a~~I~~---~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~~ 76 (137)
..+|||+++++.|+++| ||++||+++ |+ ||++++++|.+ .+.++ |++++.+.+..++|||+++|+.|++++
T Consensus 23 ~~~~sd~~~~~~~i~ve~A~~~ala~~~gi-i~~~~~~~i~~l~~~~~~~~~~d~~~i~~~e~~~~hDV~a~e~~l~e~~ 101 (465)
T 2qga_B 23 SAFFSEHALIKHRIIVEVRWLLFLNEEELF-FEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKL 101 (465)
T ss_dssp GGTSSHHHHHHHHHHHHHHHHHHHHHHTSS-SCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHhhccccHHHHHHHhhccCCChHHHHHHHHHHh
Confidence 35789999999999999 999999999 99 99888887754 44567 555666778889999999999999999
Q ss_pred C--------cccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 R--------KASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g--------~~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
| +.++|||+|+|||||++|+++|++|+++. .+++.|..++++|.++|++|+++|||||||+
T Consensus 102 g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 171 (465)
T 2qga_B 102 KNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHG 171 (465)
T ss_dssp HTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred cccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccC
Confidence 8 56999999999999999999999999998 7999999999999999999999999999997
No 13
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=99.97 E-value=2.5e-30 Score=214.03 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=121.5
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhc-CCC-C---CHHHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHHc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQEL-GLN-I---TRDQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQC 76 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~-Gi~-i---~~~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~~ 76 (137)
.+|||++.++.|+.+| |++++|+++ |+| | |++++++|.++++++ +++.+.+.+..++|||+++++.+.+++
T Consensus 25 ~~fsd~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g~~~~~~~~~~~~~~dv~av~~~l~e~~ 104 (462)
T 2ptr_A 25 GIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKV 104 (462)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccCCHHHHHhhccccCCCHHHHHHHHHHHh
Confidence 5789999999999999 999999999 553 3 389999999999888 666777788889999999999999999
Q ss_pred Cc------ccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RK------ASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~------~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+ .++|||+|+|||||++|+++|++|+++. .+++.|..++++|.++|++|+++|||||||+
T Consensus 105 g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHl 172 (462)
T 2ptr_A 105 AEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAG 172 (462)
T ss_dssp TTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred ccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 84 4899999999999999999999999999 5999999999999999999999999999997
No 14
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=99.97 E-value=1e-30 Score=216.61 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHH---hhhcCch-HHHHHHHHHHcCcccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEE---KLTRHDV-MAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~---~~~~hdv-~a~~~~l~~~~g~~~~~lH 84 (137)
|+..++.|+.+| |+|+++.++|+ ||++.+++|.+++++++ +.+...+ ..++||+ +++++.+.+++|+.++|||
T Consensus 33 d~~~~~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~-~~~~~~~f~~~~~~~dv~m~~~~~l~e~~g~~g~~vH 110 (468)
T 1k7w_A 33 DQRLSEVDIQGSMAYAKALEKAGI-LTKTELEKILSGLEKIS-EEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLH 110 (468)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH-HHHHHTCCCCCTTCCSHHHHHHHHHHHHHCGGGGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-hhhhcccCccCCCCCchHHHHHHHHHHHcccccccee
Confidence 889999999999 99999999999 99999999999987664 3333222 3468999 7999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 111 ~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHl 163 (468)
T 1k7w_A 111 TGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHL 163 (468)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 15
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=6.8e-29 Score=205.39 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=112.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHH---hhhcCch-HHHHHHHHHHcCcccCcccc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEE---KLTRHDV-MAHVHVYAEQCRKASSIIHL 85 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~---~~~~hdv-~a~~~~l~~~~g~~~~~lH~ 85 (137)
...+.....+| |+|+++.++|+ ||++++++|.+++++++ +.+...+ ..++||+ +++++.+.+++|+.++|||+
T Consensus 29 ~~l~~~~i~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~-~~~~~~~f~~~~~~~dv~~~~~~~l~e~~g~~g~~vH~ 106 (462)
T 2e9f_A 29 RALWREDLWQNRVHARMLHAVGL-LSAEELEAILKGLDRIE-EEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHT 106 (462)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH-HHHHHTCSCCCGGGCSHHHHHHHHHHHHHCTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-hhHhcccCCcCCCCCchHHHHHHHHHHHccccccceec
Confidence 44567788999 99999999999 99999999999987765 2333222 3468999 99999999999988999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccccCCC
Q psy6016 86 GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDL--PTLGFTHL 137 (137)
Q Consensus 86 G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t--~m~grTH~ 137 (137)
|+|||||++|+++|++|+++..+++.|..|+++|.++|++|+++ |||||||+
T Consensus 107 g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHl 160 (462)
T 2e9f_A 107 ARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHL 160 (462)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccC
Confidence 99999999999999999999999999999999999999999999 99999997
No 16
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=99.95 E-value=2.3e-28 Score=202.05 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=110.8
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHh----hhcCchH-HHHHHHHHHcCcccCccc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEK----LTRHDVM-AHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~----~~~hdv~-a~~~~l~~~~g~~~~~lH 84 (137)
...+...+.++ |+|+++.++|+ ||++++++|.+++++++ +++...+. ..+||+. ++++.+.+++|+.|+|||
T Consensus 27 ~~l~~~~i~~~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~-~~~~~~~~~~~~~~~~dv~~~v~~~l~e~~g~~g~~vH 104 (457)
T 1tj7_A 27 YRLAEQDIVGSVAWSKALVTVGV-LTAEEQAQLEEALNVLL-EDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLH 104 (457)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH-HHHHHCGGGGGGSCCSSHHHHHHHHHHHHHGGGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-hhHhcCCcCcCCCCCCcHHHHHHHHHHHHcccccccee
Confidence 34466678888 99999999999 99999999999987664 33333322 2389996 799999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||+++|+++|++|+++..+++.|..++++|.++|++|+++|||||||+
T Consensus 105 ~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHl 157 (457)
T 1tj7_A 105 TGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHL 157 (457)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 17
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=99.94 E-value=3.3e-26 Score=189.49 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHh--H--HhhhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAA--E--EKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~--~--~~~~~hdv~a~~~~l~~~ 75 (137)
++++++.|+++| |+|++++++|+ ||++++++|.++++++ ++..... . ..-+.|+|++++ . .+.
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~-a-~e~ 118 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANLELGE-LPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANR-A-SEI 118 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHH-H-HHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccCCCchhhhccccccccccHHHHHHHH-H-HHH
Confidence 688999999999 99999999999 9999999999987432 2111110 0 112257787777 3 788
Q ss_pred cC-ccc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR-KAS-SIIH------LGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g-~~~-~~lH------~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.| +++| +|+|||||++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+
T Consensus 119 ~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 189 (466)
T 1vdk_A 119 LGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 189 (466)
T ss_dssp TTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hCccccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 88 456 7888 9999999999999999999997 9999999999999999999999999999997
No 18
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=99.93 E-value=1.8e-25 Score=185.20 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHH---------HhH--H--hhhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRA---------AAE--E--KLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~---------~~~--~--~~~~hdv~a~~~~l~~~ 75 (137)
+++.++.|++++ |+|++++++|+ ||++++++|.++++++..... ..+ + ..+.|+|++ ..+.++
T Consensus 41 ~~~~i~a~~~v~~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~g~~~~~~mn~~~via--~~a~e~ 117 (467)
T 1fur_A 41 PTSLIHALALTKRAAAKVNEDLGL-LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLA--NRASEL 117 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccccccchhhhccccccccccHHHHHH--HHHHHH
Confidence 788999999999 99999999999 999999999998854310000 000 1 112345444 233788
Q ss_pred cC-cccCc--cc------cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR-KASSI--IH------LGATSCYVGDNTDLIQIRDAFDI-LIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g-~~~~~--lH------~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.|+| +| +|+|||||++|+++|++|+++.. +++.|..|+++|.++|++|+++|||||||+
T Consensus 118 ~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 189 (467)
T 1fur_A 118 LGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNL 189 (467)
T ss_dssp TTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccC
Confidence 88 55777 88 99999999999999999999997 999999999999999999999999999997
No 19
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=99.93 E-value=5.6e-26 Score=188.64 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=102.7
Q ss_pred ccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hHHhhhcCch------------HHHHH--
Q psy6016 7 FQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AEEKLTRHDV------------MAHVH-- 70 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~~~~~~hdv------------~a~~~-- 70 (137)
+|.+++.++.|+.+| |+|++++++|+ ||++++++|.++++++ . +++..+.|++ +++++
T Consensus 41 ~~~~~~~i~~~~~ve~A~a~a~~~~Gi-i~~~~a~~I~~a~~~i-----~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vI 114 (478)
T 1jsw_A 41 ISDIPEFVRGMVMVKKAAAMANKELQT-IPKSVANAIIAACDEV-----LNNGKCMDQFPVDVYQGGAGTSVNMNTNEVL 114 (478)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHH-----STTTCSTTCCCCCSSCCSTTHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-----HhcchhccCCccchhhccCcccccccHHHHH
Confidence 344789999999999 99999999999 9999999999987433 2 2222222222 22222
Q ss_pred --HHHHHcCc-ccC--ccc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 71 --VYAEQCRK-ASS--IIH------LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 71 --~l~~~~g~-~~~--~lH------~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+.+++|+ .|+ ++| +|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+
T Consensus 115 a~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHl 192 (478)
T 1jsw_A 115 ANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQL 192 (478)
T ss_dssp HHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGG
T ss_pred HHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeccccC
Confidence 45688885 454 677 99999999999999999999999999999999999999999999999999996
No 20
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=99.92 E-value=3.5e-25 Score=184.21 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhH--H--hhhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAE--E--KLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~--~--~~~~hdv~a~~~~l~~~ 75 (137)
+++.++.|+.++ |+|+++.++|+ ||++.+++|.++++++ ++.....+ + .-+.|+|+++. . .+.
T Consensus 67 ~~~~i~a~~~v~~A~A~a~~~~Gi-l~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~-a-~e~ 143 (488)
T 1yfm_A 67 PLPLVHAFGVLKKSAAIVNESLGG-LDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNR-A-IEI 143 (488)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHH-H-HHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccCCCcchhhccccccccccHHHHHHHH-H-HHH
Confidence 577899999999 99999999999 9999999999987432 11111111 1 11246777766 2 677
Q ss_pred cCc-cc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK-AS-SIIH------LGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~-~~-~~lH------~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+ .| +++| +|+||||+++||++|++|+++. .+++.|..|+++|.++|++|+++|||||||+
T Consensus 144 lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHl 214 (488)
T 1yfm_A 144 LGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHL 214 (488)
T ss_dssp ---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hCccccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecC
Confidence 883 45 7788 9999999999999999999998 9999999999999999999999999999997
No 21
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=99.92 E-value=3.8e-25 Score=183.18 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHHhhhc----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEEKLTR----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~~~~~----hdv~a~~~~l~~~ 75 (137)
+++.++.|+.|| |+|+++.++|+ ||++.+++|.++|+++ ++..+..+...+. |+|++ ..+.+.
T Consensus 42 ~~~~i~a~~~vk~A~A~a~~~~Gi-l~~~~a~aI~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevia--~~~~e~ 118 (468)
T 3r6q_A 42 HPELIKSLGIVKKSAALANMEVGL-LDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIA--NRALEL 118 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhCccccCCCccHHhccccccccccHHHHHH--HHHHHH
Confidence 689999999999 99999999999 9999999999988542 2222222111111 22222 245677
Q ss_pred cCcc-cCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRKA-SSI--IH------LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~~-~~~--lH------~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+. |+| +| +|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+
T Consensus 119 ~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHl 189 (468)
T 3r6q_A 119 MGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHL 189 (468)
T ss_dssp TTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEEecCcCC
Confidence 8864 565 88 69999999999999999999999999999999999999999999999999997
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=99.91 E-value=9.6e-25 Score=181.09 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=101.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHHhhhcC----chHHHHHHHHHHc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEEKLTRH----DVMAHVHVYAEQC 76 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~~~~~h----dv~a~~~~l~~~~ 76 (137)
++.++.|+.|| |+|+++.++|+ ||++.+++|.++++++ ++..+..+...+.| .|++ ..+.+.+
T Consensus 63 ~~~i~a~~~vk~A~A~an~~~G~-l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia--~~a~e~~ 139 (478)
T 3ocf_A 63 PALVRALAMVKKAAATANYKLRQ-LPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIA--NRALEHL 139 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHcCccccCCCcchhhccCCccccchHHHHHH--HHHHHHh
Confidence 78999999999 99999999999 9999999999988542 22222111111112 2222 2346778
Q ss_pred Cc-ccCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RK-ASSI--IH------LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~-~~~~--lH------~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+ .|+| +| +|+||||+++|+++|++|+++..+++.|..|+++|.++|++|+++|||||||+
T Consensus 140 G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHl 209 (478)
T 3ocf_A 140 GRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQL 209 (478)
T ss_dssp TCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred chhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccc
Confidence 85 4777 88 99999999999999999999999999999999999999999999999999997
No 23
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=99.91 E-value=1.6e-24 Score=180.40 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHHhhhcCchHHHHHHHHH--HcC
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEEKLTRHDVMAHVHVYAE--QCR 77 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~~~~~hdv~a~~~~l~~--~~g 77 (137)
++..++.|+.|+ |+|+++.++|+ ||++.+++|.++|+++ ++..+..+...+.| +++++.+.+ .+|
T Consensus 69 ~~~~I~a~~~vk~A~A~a~~~~Gi-l~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~gt~~n--mnvnevia~ra~lG 145 (495)
T 4adm_A 69 ERTQIRALGLLKGACAQVNSDLGL-LAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSN--MNTNEVIASIAAKG 145 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHH--HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhCcccCCCCcchhhcccccccc--ccHHHHHHHHHHhC
Confidence 567899999999 99999999999 9999999999988543 11111111112122 556666666 346
Q ss_pred cccCcccc------CCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 78 KASSIIHL------GATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 78 ~~~~~lH~------G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+ |+||||+++|+++|++|+++. .+++.|..|+++|.++|++|+++|||||||+
T Consensus 146 --G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHl 210 (495)
T 4adm_A 146 --GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHL 210 (495)
T ss_dssp --TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred --CCccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 666776 999999999999999999985 6999999999999999999999999999997
No 24
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=99.87 E-value=4.1e-22 Score=165.98 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhH--H--hhhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAE--E--KLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~--~--~~~~hdv~a~~~~l~~~ 75 (137)
+...++.+..|+ |+|+++.++|+ ||++.+++|.++|+++ .+..+..+ . .-+.++|++... .+.
T Consensus 73 ~~~~i~a~~~vk~AaA~an~~lG~-l~~~~a~aI~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a--~e~ 149 (495)
T 4hgv_A 73 PLAIVRALGIVKQAAARANMALGR-LDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRA--IEL 149 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCchhhccchhhhhhccccccCcchhHHHHHHH--HHH
Confidence 456799999999 99999999999 9999999999998542 11111111 1 112344544432 455
Q ss_pred cCc---------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK---------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~---------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|. ...|||+|+||||+++||++|++++++ +.+++.|..|+++|.++|++|+++|||||||+
T Consensus 150 lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHl 221 (495)
T 4hgv_A 150 LGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHT 221 (495)
T ss_dssp TTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred cCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCC
Confidence 552 256899999999999999999999876 67999999999999999999999999999997
No 25
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=99.86 E-value=1.5e-21 Score=161.95 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhH--Hh--hhcCchHHHHHHHHH
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAE--EK--LTRHDVMAHVHVYAE 74 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~--~~--~~~hdv~a~~~~l~~ 74 (137)
.++..++.+..|+ |+|.++.++|+ ||++.+++|.++|+++ .+..+..+ +. -+.|.|+ ++.+.+
T Consensus 61 ~~~~~i~a~~~vk~AaA~an~~~G~-l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevI--a~ra~e 137 (482)
T 3gtd_A 61 MPKILIRALAILKKCAAQVNYEFGD-LEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVI--ASIANE 137 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHHHH--HHHHHH
Confidence 4678999999999 99999999999 9999999999998542 11111111 11 1123333 445677
Q ss_pred HcCc-ccC--------ccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRK-ASS--------IIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~-~~~--------~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+|. .|+ +||+|+||||+++|+++|++++.+ ..+++.|..|+++|.++|++|+++|||||||+
T Consensus 138 ~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHl 210 (482)
T 3gtd_A 138 ELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHL 210 (482)
T ss_dssp HHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETT
T ss_pred HhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccC
Confidence 7773 343 466699999999999999999988 57999999999999999999999999999997
No 26
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=99.81 E-value=6.8e-20 Score=152.22 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhH--Hh--hhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAE--EK--LTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~--~~--~~~hdv~a~~~~l~~~ 75 (137)
+...++.+..|+ |+|.++.++| ||++.+++|.++|+++ .+..+..+ +. -+.|.| +++.+.++
T Consensus 69 ~~~~i~a~~~vkkAaA~an~~~G--l~~~~a~aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEv--ia~ra~e~ 144 (490)
T 3e04_A 69 PTPVIKAFGILKRAAAEVNQDYG--LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEV--ISNRAIEM 144 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGT--CCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcC--CCHHHHHHHHHHHHHHHcCCcccCCceeeecCCCCCcccccHHHH--HHHHHHHH
Confidence 357799999999 9999999999 7999999999998543 11111111 11 112233 35667888
Q ss_pred cCc-ccCc--------cccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK-ASSI--------IHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~-~~~~--------lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|. .|+| ||+|+||||+++||++|++++.+ ..+++.|..|+++|.++|++|+++|||||||+
T Consensus 145 ~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHl 216 (490)
T 3e04_A 145 LGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHT 216 (490)
T ss_dssp TTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccC
Confidence 884 4554 45599999999999999999888 57999999999999999999999999999997
No 27
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=54.58 E-value=57 Score=23.44 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccccCCChhhHHHH
Q psy6016 17 VIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDN 95 (137)
Q Consensus 17 ~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH~G~TsnDi~dT 95 (137)
.-++| ..+. .-.|. +|++..+.+..-..++ +.-...+..-.+++=-+...|.....+.+.|++.|.|+..+..
T Consensus 96 ~~~~E~~A~~--~l~~~-LP~~~~~e~~~Lw~Ey--E~~~t~Ea~~vK~~Dkl~~~lqa~~~~g~~w~~~gv~~~q~~~- 169 (200)
T 3kh1_A 96 KEERERKAAA--RLFGL-LPPDQAAEYSALWQEY--EARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDK- 169 (200)
T ss_dssp HHHHHHHHHH--HHHTT-SCHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCBHHHHHH-
T ss_pred HHHHHHHHHH--HHHHh-CChHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCccHHHHHH-
Confidence 45566 3322 33677 8887777776544222 1111112221122111122222222344789999999877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6016 96 TDLIQIRDAFDILIPKLATCIS 117 (137)
Q Consensus 96 a~~L~lr~~l~~l~~~l~~l~~ 117 (137)
. .-.+++....+-+.+..+++
T Consensus 170 ~-~~~i~~~~~~lw~~~~~~~~ 190 (200)
T 3kh1_A 170 L-LPRIEAGSKRLGAYARALVD 190 (200)
T ss_dssp H-HHHHHHHCHHHHHHHHHHHH
T ss_pred H-hHHHhhcCHHHHHHHHHHHH
Confidence 2 44555555555544444443
No 28
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=39.15 E-value=59 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM 47 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~ 47 (137)
||.+....+-... |+-..|.+.|+ |++++.+.+.+..+
T Consensus 8 ~~~~~~~~~~~r~~AL~~lL~eKGl-i~~~~id~~~~~~e 46 (203)
T 1ugp_A 8 SDEEIQKEITARVKALESMLIEQGI-LTTSMIDRMAEIYE 46 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHH
T ss_pred cccCccccHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHh
Confidence 6777777776667 99999999999 99999998887664
No 29
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=34.31 E-value=51 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy6016 103 DAFDILIPKLATCISHLAFFANKFKDLP 130 (137)
Q Consensus 103 ~~l~~l~~~l~~l~~~L~~~A~~~~~t~ 130 (137)
..+..+...|..+.+.|.++|.+|++.+
T Consensus 27 ~~~~~l~~Ql~~F~~~L~~FA~kHk~eI 54 (233)
T 1u5t_A 27 KQSVELRDQLMVFQERLVEFAKKHNSEL 54 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 4557888999999999999999998755
No 30
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=31.40 E-value=42 Score=18.12 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=15.0
Q ss_pred cCCChhhHHHHHHHHHHHH
Q psy6016 85 LGATSCYVGDNTDLIQIRD 103 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~ 103 (137)
.|+|+++++--|+..|+.+
T Consensus 25 ~~rs~s~lir~Ai~~yl~~ 43 (52)
T 2gpe_A 25 IDRTPHWLIKQAIFSYLEQ 43 (52)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHH
Confidence 5789999988888877764
No 31
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=29.51 E-value=1.2e+02 Score=19.84 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=24.1
Q ss_pred HHhhcCCCCCHHHHHHHHHhc----------ccCCHHHHHhHHhhhcCchHHHHHHHH
Q psy6016 26 CSQELGLNITRDQIEELKDNM----------MKLDLDRAAAEEKLTRHDVMAHVHVYA 73 (137)
Q Consensus 26 al~~~Gi~i~~~~a~~I~~~l----------~~~~~~~~~~~~~~~~hdv~a~~~~l~ 73 (137)
.+.+.|+ ||++.+....+.+ ..+|.+.+.+.-...-.++..++..+.
T Consensus 74 ~L~~~gv-i~~~~~~~~~~m~g~RN~lvH~Y~~id~~~v~~~i~~~l~~l~~~~~~i~ 130 (144)
T 1ylm_A 74 ILVDEKV-VTEKEGDELKKLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIR 130 (144)
T ss_dssp HHHHTTS-SCHHHHHHHHHHHTTHHHHHTCGGGCCHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHCCC-cCHHHHHHHHHHHHHHhHHhcCccccCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456677 8877665555433 246766665554332233334433333
No 32
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=28.85 E-value=1.3e+02 Score=19.84 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHcCcccCcc-ccCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcC
Q psy6016 72 YAEQCRKASSII-HLGATS-----CYVGDNTDLIQIRDAFDILIPKLAT---CISHLAFFANKFKD 128 (137)
Q Consensus 72 l~~~~g~~~~~l-H~G~Ts-----nDi~dTa~~L~lr~~l~~l~~~l~~---l~~~L~~~A~~~~~ 128 (137)
|-+.-++...+. +++ ++ ++.---+....+-.++......|++ +...|.+++.+|..
T Consensus 41 lF~~~P~~k~~F~~f~-~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~ 105 (146)
T 1it2_A 41 FLKCFPQAQASFPKFS-TKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKT 105 (146)
T ss_dssp HHHHCGGGGGGCTTTT-TCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHccccC-CCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 334445544444 566 54 3333345666666777777777777 99999999999986
No 33
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=25.18 E-value=36 Score=22.54 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=12.9
Q ss_pred cccChHHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY 21 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve 21 (137)
.+||++..|++|+--.
T Consensus 2 ~YFSpEQQyNAWvVSD 17 (130)
T 2euc_A 2 QYFSPEQQYNAWIVSD 17 (130)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CcCCHHHHhhHHHHHH
Confidence 5799999999996433
No 34
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=24.37 E-value=28 Score=16.76 Aligned_cols=9 Identities=22% Similarity=-0.001 Sum_probs=7.4
Q ss_pred cCCChhhHH
Q psy6016 85 LGATSCYVG 93 (137)
Q Consensus 85 ~G~TsnDi~ 93 (137)
.|.|+||..
T Consensus 13 sGCt~QDLL 21 (26)
T 2h8b_A 13 SGCTQQDLL 21 (26)
T ss_dssp TCBCHHHHH
T ss_pred cCCcHHHHH
Confidence 589999975
No 35
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=23.77 E-value=1.6e+02 Score=19.21 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHcCcccCcccc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6016 72 YAEQCRKASSIIHL--GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128 (137)
Q Consensus 72 l~~~~g~~~~~lH~--G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~ 128 (137)
|-+.-++...+... +.+.++.---+....+-.++..++..|+++...|.+++.+|..
T Consensus 32 lF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 90 (141)
T 1cg5_A 32 LFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKHGE 90 (141)
T ss_dssp HHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 34444544444432 4443333344666677778888888888899999999999987
No 36
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.65 E-value=56 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=10.2
Q ss_pred cCccccCCChhhHHHH
Q psy6016 80 SSIIHLGATSCYVGDN 95 (137)
Q Consensus 80 ~~~lH~G~TsnDi~dT 95 (137)
|+|+.++-||||+-|.
T Consensus 28 gryirtatssqdirdi 43 (112)
T 2lnd_A 28 GRYIRTATSSQDIRDI 43 (112)
T ss_dssp TTTEEEECSHHHHHHH
T ss_pred CceeeeccchhhHHHH
Confidence 6666666666666553
No 37
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=23.58 E-value=60 Score=20.79 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcC
Q psy6016 33 NITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR 77 (137)
Q Consensus 33 ~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g 77 (137)
|||.+-..++..+= |++ .+.+.+....|+++.+--.|.+.+|
T Consensus 53 piP~Di~raL~~vG--I~p-~id~~~Slv~~PLlnL~vaL~R~l~ 94 (101)
T 2lf6_A 53 PLPPDLRRALESVG--INP-FIPEELSLVDHPVLNFSAALNRMLA 94 (101)
T ss_dssp CCCHHHHHHHHHHT--CCS-CCCTTTTTTSSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC--CCC-CCcchHHHhhchHHHHHHHHHHHhc
Confidence 36666666655431 211 1122333456888888777777766
No 38
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1}
Probab=23.11 E-value=28 Score=23.59 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=14.7
Q ss_pred CcccCccccCCChhhHHHH
Q psy6016 77 RKASSIIHLGATSCYVGDN 95 (137)
Q Consensus 77 g~~~~~lH~G~TsnDi~dT 95 (137)
|..+ ..|+|.+.||+.+.
T Consensus 38 G~~a-R~H~G~iAQ~v~~a 55 (129)
T 3gud_A 38 GEEA-RYHFGVIAQQIVKV 55 (129)
T ss_dssp GGGS-CCEEECCHHHHHHH
T ss_pred Cccc-ceEechhHHHHHHH
Confidence 4445 99999999999875
No 39
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=22.45 E-value=1.7e+02 Score=19.10 Aligned_cols=85 Identities=7% Similarity=0.016 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc-c-CCCh-----hhHHHHHHHHHHHHHHH
Q psy6016 34 ITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH-L-GATS-----CYVGDNTDLIQIRDAFD 106 (137)
Q Consensus 34 i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH-~-G~Ts-----nDi~dTa~~L~lr~~l~ 106 (137)
+++++...|.+.-..++.+.+. ..+...|-+.-++...+.. + +.|+ ++.---+....+-.++.
T Consensus 3 lt~~~~~~I~~sw~~v~~~~~g----------~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~ 72 (146)
T 2r80_B 3 WSAEEKQLITSIWGKVNVADCG----------AEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFG 72 (146)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCchHHH----------HHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHH
Confidence 5677777776654444322211 1222233344455544444 3 5554 33444556677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy6016 107 ILIPKLATCISHLAFFANKFKD 128 (137)
Q Consensus 107 ~l~~~l~~l~~~L~~~A~~~~~ 128 (137)
.++..|+++...|.+++..|..
T Consensus 73 ~~v~~ld~l~~~l~~L~~~H~~ 94 (146)
T 2r80_B 73 DAVKNLDNIKGTFAQLSELHCD 94 (146)
T ss_dssp HHHHTTTCHHHHTHHHHHHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHH
Confidence 8888889999999999999987
No 40
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=21.72 E-value=1.7e+02 Score=18.95 Aligned_cols=56 Identities=7% Similarity=0.019 Sum_probs=38.0
Q ss_pred HHHcCcccCcc-cc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6016 73 AEQCRKASSII-HL-GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128 (137)
Q Consensus 73 ~~~~g~~~~~l-H~-G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~ 128 (137)
-+.-++...+. |+ +.++++---.+....+-.++..++..|+++...|.+++.+|..
T Consensus 33 F~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~ 90 (142)
T 3d1k_A 33 IVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDDLKTGLMELSEQHAY 90 (142)
T ss_dssp HHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33335443333 33 4444433444667777788888888888999999999999987
No 41
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=21.06 E-value=1.8e+02 Score=18.93 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCcc-cc-CCChhhHHHHHHHHHHHHHHHHHHHH
Q psy6016 34 ITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSII-HL-GATSCYVGDNTDLIQIRDAFDILIPK 111 (137)
Q Consensus 34 i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~l-H~-G~TsnDi~dTa~~L~lr~~l~~l~~~ 111 (137)
+++++...|.+.-..++.+.+. . ..+.+ |-+.-++...+. |+ ..+++ +....+-.++......
T Consensus 3 lt~~~~~~Vk~sw~~v~~~~~g-------~--~~~~r-lF~~~P~~k~~F~~f~d~~~~-----~h~~~v~~al~~~v~~ 67 (136)
T 1gcv_B 3 WTQEERDEISKTFQGTDMKTVV-------T--QALDR-MFKVYPWTNRYFQKRTDFRSS-----IHAGIVVGALQDAVKH 67 (136)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHH-------H--HHHHH-HHHHSGGGGGGTTTCTTCCHH-----HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCHHHHH-------H--HHHHH-HHHHChHHHHHhhcccCCCcc-----HHHHHHHHHHHHHHHh
Confidence 5777777777665444322221 1 12222 333335444444 33 33332 7777777888888899
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy6016 112 LATCISHLAFFANKFKDL 129 (137)
Q Consensus 112 l~~l~~~L~~~A~~~~~t 129 (137)
|+++...|.+++.+|.+.
T Consensus 68 ld~l~~~l~~L~~~H~~k 85 (136)
T 1gcv_B 68 MDDVKTLFKDLSKKHADD 85 (136)
T ss_dssp TTCHHHHTHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHhHHh
Confidence 999999999999999863
No 42
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=20.90 E-value=1.6e+02 Score=19.01 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcC
Q psy6016 96 TDLIQIRDAFDILIPKLAT---CISHLAFFANKFKD 128 (137)
Q Consensus 96 a~~L~lr~~l~~l~~~l~~---l~~~L~~~A~~~~~ 128 (137)
+....+-.++..++..|++ +...|.+++.+|..
T Consensus 63 ~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~ 98 (142)
T 1b0b_A 63 AQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA 98 (142)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhhc
Confidence 5555566677666665554 88999999999975
Done!