RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6016
(137 letters)
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 184 bits (468), Expect = 1e-57
Identities = 70/110 (63%), Positives = 86/110 (78%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ELGL+I+ +QIEE+K N+ +D + AAAEEK RHDVMAHVH + C A+ IIHLGA
Sbjct: 35 KELGLDISDEQIEEMKANVENIDFEIAAAEEKKLRHDVMAHVHAFGLLCPAAAGIIHLGA 94
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSC+V DNTDLIQIRDA D+++PKLA I LA FA ++KDLPTLGFTH
Sbjct: 95 TSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHY 144
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 133 bits (337), Expect = 1e-38
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 12 GRINKVIKVYSILFCSQ-ELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAH 68
++ + V + L +Q ELGL I ++ EE++ ++D +R A EK T HDV+A
Sbjct: 9 NKLRTWLDVEAALAEAQAELGL-IPKEAAEEIRAAADVFEIDAERIAEIEKETGHDVIAF 67
Query: 69 VHVYAEQCRK-ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V+ AE+C + A +H GATS + D +Q+RDA DI++P L I LA A + K
Sbjct: 68 VYALAEKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHK 127
Query: 128 DLPTLGFTHL 137
D P LG TH
Sbjct: 128 DTPMLGRTHG 137
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 115 bits (290), Expect = 2e-31
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 12 GRINKVIKVYSILFCSQ-ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAH 68
++ +KV + L +Q ELG+ I + E+ + DL+R E T HDV A
Sbjct: 18 AKLRAWLKVEAALARAQAELGV-IPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDVKAL 76
Query: 69 VHVYAEQC-RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V AE+ +AS +H GATS + D +Q+++A D+++P L I LA A + K
Sbjct: 77 VRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHK 136
Query: 128 DLPTLGFTHL 137
D P LG TH
Sbjct: 137 DTPMLGRTHG 146
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 105 bits (265), Expect = 5e-28
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 29 ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
ELG+ I + ++E+ K N +DL R E +TRHDV A V+ E+C IH G
Sbjct: 36 ELGV-IPAEAVKEIRAKANFTDVDLARIKEIEAVTRHDVKAVVYALKEKCGAEGEFIHFG 94
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
ATS + D + +RDA +I++PKL I L A ++KD LG TH
Sbjct: 95 ATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTH 144
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 96.4 bits (241), Expect = 5e-25
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDVMAHVHVYAEQCRKASS-IIH 84
ELGL + ++ E + + ++ AA + E HDVMA V AE+ + + +H
Sbjct: 17 ELGL-LPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVH 75
Query: 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
G +S + D + +RDA DIL+P L I LA A + KD G THL
Sbjct: 76 TGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHL 128
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 78.4 bits (194), Expect = 5e-18
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
+LG+ I + EE++ K D++R E T+HDV+A V AE C +A IH G T
Sbjct: 33 KLGV-IPAEAAEEIRKKA-KFDVERVKEIEAETKHDVIAFVTAIAEYCGEAGRYIHFGLT 90
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D +Q+R+A DI++ L + L A + KD +G TH
Sbjct: 91 SSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTH 138
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 73.1 bits (180), Expect = 4e-16
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 13 RINKVIKVYSILFCSQ-ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHV 69
++ K++ V + L ++ ELGL I + EE+ K + + L+R E HD+MA V
Sbjct: 24 KLQKMLDVEAALARAEAELGL-IPEEAAEEINRKASTKYVKLERVKEIEAEIHHDIMAVV 82
Query: 70 HVYAEQCR-KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128
+E C A +H GATS + D +Q++D+ +IL KL L A + K+
Sbjct: 83 KALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKN 142
Query: 129 LPTLGFTH 136
+G TH
Sbjct: 143 TVCIGRTH 150
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 66.1 bits (161), Expect = 1e-13
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 13 RINKVIKVYSILFCSQ-ELGLNITRDQIEELK----DNMMKLDLDRAAAEEKLTRHDVMA 67
R+ ++KV + + ++ E G+ I RD ++K N ++L+ R E +HDVMA
Sbjct: 24 RLRYMLKVEAAIAKAEYEYGI-IPRDAFLDIKNAVDSNSVRLE--RVREIESEIKHDVMA 80
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V +EQC + +H G TS + D +QI D I+ + + L +++K
Sbjct: 81 LVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYK 140
Query: 128 DLPTLGFTH 136
D P +G TH
Sbjct: 141 DSPMMGRTH 149
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 57.6 bits (140), Expect = 5e-11
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 49 LDLDRAAAEEKLTRHDVMAHVHVYAEQC------RKASSIIHLGATSCYVGDNTDLIQIR 102
L ++ AAA V A + S+++H G +S +G + +R
Sbjct: 5 LLVELAAAL--------ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALR 56
Query: 103 DAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
DA D L+P L I LA A K G THL
Sbjct: 57 DALDDLLPLLKALIDALALKAEAHKGTVMPGRTHL 91
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 56.1 bits (136), Expect = 3e-10
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 48 KLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASS-IIHLGATSCYVGDNTDLIQIRDAFD 106
+LDL+ A T H + V C A+ +H GAT+ + D ++Q+RDA D
Sbjct: 57 RLDLEALAEATARTGHPAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALD 116
Query: 107 ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+L L + LA A +D P +G THL
Sbjct: 117 LLERDLDALLDALARLAATHRDTPMVGRTHL 147
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 48.4 bits (116), Expect = 1e-07
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 29 ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
ELG I ++ E + K + D+ R E +T+HDV+A + AE + +H G
Sbjct: 36 ELG-VIPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDVIAFLTHLAEFVGPDARFVHQG 94
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D +Q+ A D+L+ L ++ L A + KD PT+G +H
Sbjct: 95 MTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSH 144
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 44.7 bits (106), Expect = 3e-06
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 78 KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+A+ +H GATS V D + ++Q+RDA D+L+ L LA A + +D P G T L
Sbjct: 88 EAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLL 147
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 43.2 bits (102), Expect = 1e-05
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 30 LGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATS 89
LGL I E++ N K D+ R EK T+HD++A + +E + S +H G TS
Sbjct: 37 LGL-IPDSDCEKICKNA-KFDIARIDEIEKTTKHDLIAFLTSVSESLGEESRFVHYGMTS 94
Query: 90 CYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
D +Q+RD+ ++I + + + A + KD +G +H
Sbjct: 95 SDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSH 141
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 43.0 bits (102), Expect = 1e-05
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 34 ITRDQIEELK---DNMMKLDLDRAAAEEKLTRHDVMA-------HVHVYAEQCRKASSII 83
+T+++++ L+ +N + D R E T HDV A +K I
Sbjct: 37 LTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYFLKEKFETL-GLLKKIKEFI 95
Query: 84 HLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTH 136
H TS + + + I++A ++++P L I L A ++ D+P L TH
Sbjct: 96 HFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTH 149
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 42.7 bits (101), Expect = 1e-05
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG I ++ +EE+K D R E RHDV+A + E A IHLG T
Sbjct: 36 ELG-KIPQEAVEEIKAKA-NFDPQRILEIEAEVRHDVIAFLTNVNEYVGDAGRYIHLGMT 93
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D +Q+ + D+L+ +L I + + A + ++ +G +H
Sbjct: 94 SSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSH 141
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 40.4 bits (95), Expect = 1e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
A+ +H GATS + D ++Q+RDA D+L P L LA A + + P +G T L
Sbjct: 98 AARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 36.3 bits (85), Expect = 0.002
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 50 DLDRAAAEEKLTRHDVMA-------HVHVYAEQCRKASSIIHLGATSCYVGDNTDL---I 99
D R E+ T HDV A + E S IH TS D +L +
Sbjct: 78 DAARIKEIERTTNHDVKAVEYFLKEKLAGLPE-LEAVSEFIHFACTS---EDINNLSHAL 133
Query: 100 QIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+++A + +L+P L I L A+++ D+P L TH
Sbjct: 134 MLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTH 171
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 36.3 bits (84), Expect = 0.003
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 58 EKLTRHDVMAHVHVYAEQCR------KASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIP 110
E++T HDV A + ++C+ K H TS + + + + +++ + +++P
Sbjct: 89 ERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLP 148
Query: 111 KLATCISHLAFFANKFKDLPTLGFTH 136
+ I ++ A++F +P L TH
Sbjct: 149 TMDEIIKAISSLAHEFAYVPMLSRTH 174
>gnl|CDD|237948 PRK15339, PRK15339, type III secretion system outer membrane pore
InvG; Provisional.
Length = 559
Score = 31.3 bits (71), Expect = 0.14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 77 RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHL 119
R+ +I L T +VGD T +R I+IP +AT I L
Sbjct: 176 RQKIGVIRLNNT--FVGDRT--YNLRGQ-KIVIPGIATVIERL 213
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 30.4 bits (69), Expect = 0.26
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 83 IHLGATSCYVGD--NTDL-IQIRDA-FDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+H G +S D T L + ++ A ++L+P L I L A +F D+ G THL
Sbjct: 105 VHTGQSS---NDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHL 160
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 28.5 bits (64), Expect = 0.96
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA-----SSII 83
E G+ I + E + + D AA R V+ V Q R A ++ +
Sbjct: 46 EHGI-IPAEAAERIAAACETFEPDLAALRHATARDGVV--VPALVRQLRAAVGEEAAAHV 102
Query: 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFT 135
H GATS V D + +++++ A +IL +L I+ L F +G T
Sbjct: 103 HFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHT 154
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 28.5 bits (64), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 101 IRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
RDA D++ ++ T L A K DL G+THL
Sbjct: 135 CRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHL 171
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 28.1 bits (62), Expect = 1.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 15 NKVIKVYSILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKL 60
NK + Y I EL L + + EE+ DN K D+ +EEKL
Sbjct: 628 NKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
>gnl|CDD|213941 TIGR04328, cas4_PREFRAN, CRISPR-associated protein Cas4, subtype
PREFRAN. Members of this family are the Cas4 protein of
a novel CRISPR subtype, PREFRAN, found in Prevotella
bryantii B14, Prevotella disiens FB035-09AN, Francisella
tularensis subsp. novicida, Francisella philomiragia,
Butyrivibrio proteoclasticus B316, Helcococcus kunzii
ATCC 51366, etc.
Length = 178
Score = 27.5 bits (61), Expect = 1.9
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 8 QSYSGRINKVIKVYSILFCSQELGLNITRDQIEELKDN-MMKLDLDRAAAEEKLTRH 63
Q + G I ++Y+ FC E+G + + + DN +D+ +E +
Sbjct: 92 QIFDGYI---YQLYAQYFCLLEMGYKVNSIEFYSIDDNKHYPIDIPCEDKKEMFEKF 145
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 2.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKA 79
+ + R++ EEL++ +L+ A AEEK + A AE+ R+
Sbjct: 528 RRETIEEKRERAEELRERAAELE---AEAEEK---REAAAEAEEEAEEAREE 573
Score = 26.5 bits (59), Expect = 5.8
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 26 CSQEL-------GLNITRDQIEELKDNMMKLDLDRAAAEEKLTR 62
C Q + + R+++EEL+ + L+ + EE+L R
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 27.3 bits (61), Expect = 3.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 36 RDQIEELKDNMMKLDLDRAAAE 57
++Q+ E + + +L+LD A E
Sbjct: 261 KEQLVENSELLTQLELDEAEEE 282
>gnl|CDD|177532 PHA03115, PHA03115, hypothetical protein; Provisional.
Length = 340
Score = 27.3 bits (60), Expect = 3.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 55 AAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQ 100
+AE+ + R+ + H V +C S ++H T+C + +N +L++
Sbjct: 37 SAEKYMCRYTTLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVR 82
>gnl|CDD|237460 PRK13656, PRK13656, trans-2-enoyl-CoA reductase; Provisional.
Length = 398
Score = 27.1 bits (61), Expect = 3.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 48 KLDLDRAAAE--EKLTRHDVMAHVHVYAEQCRKASSII 83
K DLDR A EKL A+V V +ASS I
Sbjct: 244 KKDLDRTALALNEKLAAKGGDAYVSVLKAVVTQASSAI 281
>gnl|CDD|235762 PRK06267, PRK06267, hypothetical protein; Provisional.
Length = 350
Score = 26.6 bits (59), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 30 LGLNITRDQIEELKDNMMKLDLDR 53
LGL T D IE+L + + +LDLDR
Sbjct: 175 LGLGETEDDIEKLLNLIEELDLDR 198
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 26.8 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 108 LIPKLATCISHLAFFANKFKDLPTLGFTHL 137
LIP L I LA A +F D+ +G THL
Sbjct: 159 LIPALKHLIKTLAAKAEEFADVVKIGRTHL 188
>gnl|CDD|218939 pfam06207, DUF1002, Protein of unknown function (DUF1002). This
protein family has no known function. Its members are
about 300 amino acids in length. It has so far been
detected in Firmicute bacteria and some archaebacteria.
Length = 222
Score = 26.4 bits (59), Expect = 4.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 28 QELGLNITRDQIEELKDNMMKL 49
L +N+T +QI+++ + M+K+
Sbjct: 183 NNLNINLTDNQIQQIVNLMVKI 204
>gnl|CDD|221296 pfam11894, DUF3414, Protein of unknown function (DUF3414). This
family of proteins are functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 764 to 2011 amino acids in length.
This protein has a conserved LLG sequence motif.
Length = 1612
Score = 26.5 bits (59), Expect = 5.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 101 IRDAFDILIPKLATCISHLAFFAN 124
I + ++PKL I FA
Sbjct: 1262 ILEILQAILPKLEDYIDSDVEFAE 1285
>gnl|CDD|115459 pfam06802, DUF1231, Protein of unknown function (DUF1231). This
family consists of several Orthopoxvirus specific
proteins predominantly of around 340 residues in length.
This family contains both B17 and B15 proteins, the
function of which are unknown.
Length = 340
Score = 26.5 bits (58), Expect = 6.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 55 AAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQ 100
+AE+ + R+ + H V +C S ++H T+C + +N +L++
Sbjct: 37 SAEKYMCRYTTLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVR 82
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain. This domain is found
in phenylalanine-tRNA synthetase beta subunits.
Length = 68
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 30 LGLNITRDQIEELKDNMMKLDLDRAAAEEKLT------RHDVM 66
LGL I ++IEE+ + +L + + + L R D++
Sbjct: 14 LGLEILAEEIEEI---LKRLGFEVEVSGDTLEVTVPSYRFDIL 53
>gnl|CDD|206160 pfam13990, YjcZ, YjcZ-like protein. This family of proteins is
functionally uncharacterized. The family includes the
YjcZ protein from E. coli. This family of proteins is
found in enteric bacteria. Proteins in this family are
approximately 300 amino acids in length. There are two
conserved sequence motifs: FGD and MPR.
Length = 270
Score = 25.8 bits (57), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 35 TRDQIEELKDNMMKLDLDRAAA-EEKLTRHDVMAHVHVYAEQ 75
TR Q+ L + K RAA E+ LT+ D+ ++ EQ
Sbjct: 95 TRQQLLALTEQFNK----RAAHLEKALTQVDLTVRAQLHLEQ 132
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 26.3 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 36 RDQIEELKDNMMKLDLDRAAAEEKL 60
R +I L+ M KL+ A AEEKL
Sbjct: 562 RKEIARLEKEMEKLNAQLAQAEEKL 586
>gnl|CDD|220917 pfam10970, DUF2772, Protein of unknown function (DUF2772). Members
in this family of proteins are annotated as spore
germination protein GE however this cannot be confirmed.
Length = 121
Score = 25.0 bits (55), Expect = 9.2
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 79 ASSIIHLGATSCYVGDNTDLIQIR 102
+SS++ +G+T YV + + IR
Sbjct: 91 SSSVVQIGST-SYVFGESRVKHIR 113
>gnl|CDD|225552 COG3007, COG3007, Uncharacterized paraquat-inducible protein B
[Function unknown].
Length = 398
Score = 25.9 bits (57), Expect = 9.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 48 KLDLDRA--AAEEKLTRHDVMAHVHVYAEQCRKASSII 83
K DLD+ A EKL A V V +ASS I
Sbjct: 244 KKDLDQKSLAINEKLAALGGGARVSVLKAVVTQASSAI 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,892,884
Number of extensions: 602956
Number of successful extensions: 876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 47
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)