RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6016
(137 letters)
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 170 bits (433), Expect = 5e-52
Identities = 69/109 (63%), Positives = 80/109 (73%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
Q LGL IT +QI E+K N+ +D AA EEK RHDVMAHVH + C KA+ IIHLGA
Sbjct: 73 QTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGA 132
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TSCYVGDNTDLI +R+A D+L+PKLA IS LA FA + LPTLGFTH
Sbjct: 133 TSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTH 181
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 167 bits (424), Expect = 6e-51
Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 28 QELGL-NITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
+ELGL +T+D I+E+K N D +EE+ +HDVMAH H + + C A+ IIHLG
Sbjct: 46 KELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLG 105
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
ATSC+V DN DLI RD+ D ++ + AT I LA F+ K K++ T+G TH
Sbjct: 106 ATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTH 155
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 121 bits (306), Expect = 4e-34
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG+ R E++ + D E+ T HD+++ V + ++ +H GAT
Sbjct: 41 ELGV-AERGCCEKVNKA--SVSADEVYRLERETGHDILSLVLLLEQKS--GCRYVHYGAT 95
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
S + D + IR A + K LA A K+K L +G TH
Sbjct: 96 SNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHG 144
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 87.7 bits (218), Expect = 2e-21
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG+ I + E +++N K+D++ E+ T HDV+A V + S H G T
Sbjct: 35 ELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLT 92
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D + + + +A IL+ L L AN++K PT+G TH
Sbjct: 93 SSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTH 140
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 87.4 bits (217), Expect = 2e-21
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR--KASSIIHLG 86
ELG I ++ +++++++ D+DR EK TRHDV+A +E + +H G
Sbjct: 45 ELGD-IPKEDVKKIREHA-SFDIDRIYEIEKETRHDVVAFTRAVSETPALGEERKWVHYG 102
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D ++ A +I++ L +S LA A + K +G TH
Sbjct: 103 LTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTH 152
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 85.4 bits (212), Expect = 9e-21
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASSIIHLG 86
E + + + E++ ++ +R EK+T+HD++A AEQ + H G
Sbjct: 34 LEDRM-VPKGTAAEIRARA-QIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFG 91
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS + D+ +QIRD+ +I L L A + K++ T+G +H
Sbjct: 92 VTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSH 141
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 82.3 bits (204), Expect = 1e-19
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 29 ELGLNITRDQIEELKDN--MMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
LG+ I D + +++R + ++ + ++ V + +A +H G
Sbjct: 43 RLGI-IPEDAAAGITAAARTFAPEMERLRDDTEIVGYPILPLVEQLSAHAGEAGKYLHWG 101
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
AT+ + D ++QIRD ++ ++ + LA A +D P G THL
Sbjct: 102 ATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHL 152
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 77.3 bits (191), Expect = 8e-18
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 29 ELGLNITRDQIEELKDN--MMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRK----ASSI 82
GL + + ++ + D A + + V + A
Sbjct: 41 SAGL-VPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERY 99
Query: 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+HLGATS D ++Q+RDA D++ L L+ A K D P +G T L
Sbjct: 100 VHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWL 154
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 75.4 bits (186), Expect = 3e-17
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 29 ELGLNITRDQIEELKDN----MMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRK----AS 80
++G+ I + ++ + K+D D A L + + V + A+
Sbjct: 43 QVGV-IPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAA 101
Query: 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+H GATS + D ++Q RDA I+ ++ C A ++ +G T L
Sbjct: 102 RYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 158
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 73.8 bits (182), Expect = 1e-16
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 29 ELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASSIIHL 85
E + D+ E + + D+ V + +A+ +H
Sbjct: 46 EASI-FADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHF 104
Query: 86 GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
GATS V D + +++++ A +I+ +L I L A++ P G+T +
Sbjct: 105 GATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRM 156
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 67.3 bits (164), Expect = 3e-14
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 35 TRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI------IHLGAT 88
R + +L N + + ++ EK T HDV A + ++ ++ + IH T
Sbjct: 66 ARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACT 125
Query: 89 SCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S + + + I+ A ++ P +A + + + D+ L TH
Sbjct: 126 SEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTH 174
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 66.1 bits (161), Expect = 6e-14
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 35 TRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI------IHLGAT 88
++ + + + D R E+ T HDV A + E+ + + IH T
Sbjct: 63 AIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACT 122
Query: 89 SCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S + + + + ++ A D +++P I L A +++D+P L T
Sbjct: 123 SEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTA 171
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 60.7 bits (147), Expect = 5e-12
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 35 TRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQC--------RKASSIIHLG 86
+ + + ++ N+ D+ R A E+ T HDV A + E+ K +H
Sbjct: 60 SVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYL 119
Query: 87 ATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS + + ++ D++IP L + L A ++ +P L TH
Sbjct: 120 CTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTH 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.23
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 39/125 (31%)
Query: 15 NKVIKVYSIL--FCSQELGLNITRD-------------QIEELKDNMMKLDLDRAAAEEK 59
++ Y+I F S +L + E + LD E+K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 60 LTRH------------DVMAHVHVY----AEQC----RKASSIIHL---GATSCYVGDNT 96
+ RH + + + Y + R ++I+ + T
Sbjct: 507 I-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 97 DLIQI 101
DL++I
Sbjct: 566 DLLRI 570
Score = 29.1 bits (64), Expect = 0.49
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 34/129 (26%)
Query: 18 IKVYSILFCSQELGLNITRDQIEELKDNMMKLDL-DRAAAEEKLTRHDVMAHVHVYAEQC 76
+ S+++ ++ + + + + + K L ++ E ++ +Y E
Sbjct: 389 TILLSLIWF------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------IYLELK 436
Query: 77 RKASSI--IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCI-SHLAF------------ 121
K + +H Y ++ + D+ D++ P L SH+
Sbjct: 437 VKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 122 -FANKFKDL 129
F F D
Sbjct: 492 LFRMVFLDF 500
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 28.5 bits (63), Expect = 0.49
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 11 SGRINKVIKVYSILFCSQELGLNITRDQIEELKDNMMK-LDLDR 53
GR+ I + L+ +++ +E +M+ LD
Sbjct: 112 DGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTN 155
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress
response-related, signaling P; 2.70A {Escherichia coli}
Length = 138
Score = 26.1 bits (57), Expect = 3.2
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 31 GLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMA 67
LN+T Q +++++ M + + R EE+ HD++
Sbjct: 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIT 69
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 25.3 bits (55), Expect = 4.3
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 30 LGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHD 64
L + RD+ +EL D + +L ++ E++ R
Sbjct: 42 LNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKK 76
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 25.0 bits (54), Expect = 5.9
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHD 64
L + R++ +EL + L+ ++ +EK +
Sbjct: 41 HLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQK 76
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat
listeria monocytogenes EGD-E; 1.95A {Listeria
monocytogenes} PDB: 3tfc_A*
Length = 385
Score = 25.5 bits (56), Expect = 6.2
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 32 LNITRDQIEELKDNMMKLDLDRAAAEEKLTR 62
L R Q+++L ++++L RA +++ +
Sbjct: 30 LEELRTQVDQLNIDLLELISKRANLVQEIGK 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 25.3 bits (56), Expect = 7.5
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 91 YVGDNTDLIQI-RDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
Y+ N L I +DAF + + S L LP+ G HL
Sbjct: 185 YLNKNKYLTVIDKDAFG----GVYSGPSLLDVSQTSVTALPSKGLEHL 228
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 25.2 bits (56), Expect = 8.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
LIP L +++L + + + +G THL
Sbjct: 179 QQLIPALNNLLTYLQDKSKDWDKIIKIGRTHL 210
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 25.2 bits (56), Expect = 8.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+ LIP+L + L + +F + +G THL
Sbjct: 183 NELIPELTNLKNALEAKSKEFDHIVKIGRTHL 214
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 25.2 bits (56), Expect = 9.4
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
++L+P L L + +F + +G TH
Sbjct: 185 EVLLPGLQKLHDALDAKSKEFAQIIKIGRTHT 216
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 25.2 bits (56), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
LIP+L T L + F D+ +G T+L
Sbjct: 158 KQLIPQLKTLTQTLNEKSRAFADIVKIGRTNL 189
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 25.2 bits (56), Expect = 9.7
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 106 DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
L P + I A F + +G THL
Sbjct: 158 QRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,114,093
Number of extensions: 116939
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 34
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)