RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6016
         (137 letters)



>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
           [Bacillus sp. NRRL B-14911]   gi|89084274|gb|EAR63432.1|
           adenylosuccinate lyase [Bacillus sp. NRRL B-14911]  E=0
           s/c=1.85 id=87% cov=100%
          Length = 408

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 29  ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
           ELG  I ++ ++++++N    D++R    E+ TRHDV+A     +E   +    +H G T
Sbjct: 28  ELGD-IPKEDVQKIRENA-SFDIERINEIEQETRHDVVAFTRAVSETLGEERKWVHYGLT 85

Query: 89  SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
           S  V D      I+ A  IL+  L   +  L   A + K    +G TH 
Sbjct: 86  STDVVDTALSYLIKQANSILLQDLENFVEILKNKAKEHKYTVMMGRTHG 134


>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 429

 Score = 65.7 bits (159), Expect = 3e-14
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 29  ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
           ELG+ I +   E +++N  K+D++     E+ T HDV+A V        + S   H G T
Sbjct: 35  ELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLT 92

Query: 89  SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
           S  V D  + + + +A  IL+  L      L   AN++K  PT+G TH 
Sbjct: 93  SSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHG 141


>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
          Length = 448

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 29  ELGLNITRDQIEELKD--NMMKLDLDRAAAEEKLTRHDVMAHVHVYAE----QCRKASSI 82
             GL +    +  ++      + D    A       +  +  V    +       +A   
Sbjct: 39  SAGL-VPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERY 97

Query: 83  IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
           +HLGATS    D   ++Q+RDA D++   L      L+  A K  D P +G T L
Sbjct: 98  VHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWL 152


>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 402

 Score = 44.2 bits (103), Expect = 9e-07
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 9   SYSGRINKVIKVYSILFCSQ-ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMA 67
           +    IN  ++V   L C+  ELG+   R   E++      +  D     E+ T HD+++
Sbjct: 19  TNEAIINAYLEVERALVCALEELGV-AERGCCEKVNKA--SVSADEVYRLERETGHDILS 75

Query: 68  HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
              V   + +     +H GATS  + D    + IR A   +  K       LA  A K+K
Sbjct: 76  --LVLLLEQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYK 133

Query: 128 DLPTLGFTHL 137
            L  +G TH 
Sbjct: 134 TLEMVGRTHG 143


>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 444

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 39  IEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRK----ASSIIHLGATSCYVGD 94
               K  + K+D D  A    L  +  +  V       +     A+  +H GATS  + D
Sbjct: 51  QRAAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILD 110

Query: 95  NTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
              ++Q RDA  I+  ++  C       A  ++    +G T L
Sbjct: 111 TACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 153


>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 77

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 33 NITRDQIEELKDNMMKLDLDR 53
          N+T +QI E K+     D D 
Sbjct: 3  NLTEEQIAEFKEAFALFDKDN 23


>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured
           thermotogales bacterium [TaxId: 221214]}
          Length = 217

 Score = 23.9 bits (51), Expect = 7.9
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 9   SYSGRINKVIKVYSILFCSQELG-----LNITRDQIEELKDNMMKLDLDRAAAEEKLTRH 63
           SYSG+    +        S   G     +N   ++I +++      +  R  AE+   R+
Sbjct: 146 SYSGKTGTPLHSLQFSPRSSYSGNSRSSINHFHEKILKIRPETFWTETARKMAED---RY 202

Query: 64  DVM 66
             +
Sbjct: 203 SFV 205


>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 23.6 bits (50), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 33 NITRDQIEELKDNMMKLDLDR 53
          N+T +QI E K+     D D 
Sbjct: 3  NLTEEQIAEFKEAFALFDKDN 23


>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
          {Soybean (Glycine max) [TaxId: 3847]}
          Length = 182

 Score = 23.8 bits (50), Expect = 9.0
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 33 NITRDQIEELKDNMMKLDLDR 53
           ++ ++I  LK+    +D D 
Sbjct: 3  RLSEEEIGGLKELFKMIDTDN 23


>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B
          (GidB) {Bacillus subtilis [TaxId: 1423]}
          Length = 239

 Score = 23.6 bits (50), Expect = 9.1
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 28 QELGLNITRDQIEELKD 44
           E G++++  Q+E+ + 
Sbjct: 12 AEKGISLSPRQLEQFEL 28


>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate
          isomerase {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 160

 Score = 23.6 bits (50), Expect = 9.3
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVH 70
           LG +    Q+  + +     +    +  E  TR  ++AHV 
Sbjct: 17 RLGTSHYSRQLSLVDNA----EFGEHSLLEGWTRSHLIAHVA 54


>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
           2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
          Length = 222

 Score = 23.7 bits (50), Expect = 9.5
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 64  DVMAHVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKL 112
           + +    + ++    A      GA         D++ I++  D+ +  +
Sbjct: 17  EPLHSSFIMSKMALAA---YEGGAVGIRANTKEDILAIKETVDLPVIGI 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,250
Number of extensions: 21743
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 21
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)