BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6018
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
           SortilinNTS3 IN Complex With Neurotensin
          Length = 685

 Score = 29.6 bits (65), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 20  INAHDVMVFLHIQKTGGTSFGRHLVSD 46
           + A+D MVF+H+ + G T FG    SD
Sbjct: 277 LAANDDMVFMHVDEPGDTGFGTIFTSD 303


>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
          Length = 353

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 1   MSYDYENDEATGSNDQRFDINAH 23
           ++YD  N+E  G+ D  FD+  H
Sbjct: 193 VTYDIRNNEVEGAVDNYFDVGLH 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,749,153
Number of Sequences: 62578
Number of extensions: 137491
Number of successful extensions: 255
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 5
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)