Query psy6018
Match_columns 111
No_of_seqs 45 out of 47
Neff 2.6
Searched_HMMs 46136
Date Sat Aug 17 00:26:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3955|consensus 100.0 3.3E-35 7.2E-40 244.0 1.0 109 3-111 46-157 (361)
2 KOG3955|consensus 98.7 5.4E-09 1.2E-13 88.1 1.7 77 16-95 38-115 (361)
3 PF03567 Sulfotransfer_2: Sulf 98.3 5.4E-09 1.2E-13 73.8 -6.3 73 18-102 3-77 (253)
4 PF09907 DUF2136: Uncharacteri 76.3 5.9 0.00013 26.9 4.1 45 5-49 28-72 (76)
5 COG4680 Uncharacterized protei 71.8 7.2 0.00016 28.6 3.9 40 11-50 52-91 (98)
6 PF06990 Gal-3-0_sulfotr: Gala 45.1 9.1 0.0002 32.6 0.6 30 25-54 68-102 (402)
7 KOG3922|consensus 36.3 20 0.00043 31.4 1.3 43 3-46 54-100 (361)
8 PF05578 Peptidase_S31: Pestiv 30.4 28 0.00062 28.2 1.3 18 17-36 122-140 (211)
9 PF04622 ERG2_Sigma1R: ERG2 an 27.7 31 0.00066 27.7 1.0 26 68-93 73-100 (216)
10 PF10272 Tmpp129: Putative tra 26.9 18 0.00038 31.1 -0.5 11 68-78 331-341 (358)
11 TIGR03421 FeS_CyaY iron donor 23.7 61 0.0013 22.9 1.8 40 69-109 54-100 (102)
12 PRK12390 1-aminocyclopropane-1 23.6 58 0.0013 26.0 1.9 19 20-42 311-329 (337)
13 PF06377 Adipokin_hormo: Adipo 22.3 30 0.00066 22.3 0.1 19 78-98 4-24 (48)
14 KOG3489|consensus 21.7 45 0.00096 24.0 0.8 13 91-103 56-68 (86)
15 PF15627 CEP76-C2: CEP76 C2 do 21.7 1E+02 0.0022 23.7 2.8 47 27-76 9-67 (156)
16 TIGR02683 upstrm_HI1419 probab 21.0 95 0.0021 20.7 2.3 21 16-36 60-81 (95)
No 1
>KOG3955|consensus
Probab=100.00 E-value=3.3e-35 Score=244.03 Aligned_cols=109 Identities=48% Similarity=0.932 Sum_probs=103.7
Q ss_pred cccccccccCCCc-eeeecCCCcEEEEEEeeccCCceeeeeeeccCCCCCCcccccCceeeeecCCCCCCeeEEEeeece
Q psy6018 3 YDYENDEATGSND-QRFDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSRYSTG 81 (111)
Q Consensus 3 y~y~~~~~~~~~~-~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~l~l~~pC~c~~~~Krc~C~rP~~~etWLFSRyStG 81 (111)
|.|+++.+++... +.|+++++|+|||+|||||+||||+|+|||+..+.+||.|+.++|+|.|.+|..+|||||||||||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~tt~~~~~~r~y~~~~p~~~~~~~~~~~~~~~~~~~twlfsr~s~g 125 (361)
T KOG3955|consen 46 VPRYNFTRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRETWLFSRFSTG 125 (361)
T ss_pred eeEEEEEEecccccccccccCCCccccccccccCCCCCcchhhhhhhhcchhhhhhcccccCCCccceeeeeeccccccc
Confidence 6788888888876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccchhhh--hhhhhHhhhcccccccCC
Q psy6018 82 WKCGLHADWTEL--TSCVHSELDKNEGHVQRR 111 (111)
Q Consensus 82 W~CGLHADwTEL--t~CV~~~l~k~~g~~~kR 111 (111)
|.|||||||||+ ..|++..+++..+...+|
T Consensus 126 ~~~glhad~te~vv~~~~~~~~r~~~~~~~~r 157 (361)
T KOG3955|consen 126 WSCGLHADWTESVVDGKRDARLRPSRWRIFKR 157 (361)
T ss_pred cceeeecchhhhhccceeccccChhhhhhccc
Confidence 999999999999 899999999998887765
No 2
>KOG3955|consensus
Probab=98.70 E-value=5.4e-09 Score=88.10 Aligned_cols=77 Identities=5% Similarity=-0.236 Sum_probs=71.3
Q ss_pred eeeecCCCcEEEEEEeeccCCceeeeeeeccCCCCCCcccccCceeeeecCCCCCCeeEEE-eeeceeeeccccchhhhh
Q psy6018 16 QRFDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFS-RYSTGWKCGLHADWTELT 94 (111)
Q Consensus 16 ~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~l~l~~pC~c~~~~Krc~C~rP~~~etWLFS-RyStGW~CGLHADwTELt 94 (111)
.++++.+ |++|+||+++++|+ |.+|+.......+|.|..+.+.|+|.++...+.|+++ +.+++|.|+.|+||++++
T Consensus 38 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~tt~~~~~~r~y~~~~p~~~~~~~~~~~~~~~~~~ 114 (361)
T KOG3955|consen 38 EDESSAR--FVPRYNFTRGDLLR-KVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKR 114 (361)
T ss_pred hhccccc--eeeEEEEEEecccc-cccccccCCCccccccccccCCCCCcchhhhhhhhcchhhhhhcccccCCCcccee
Confidence 3444444 99999999999999 9999999999999999999999999999999999999 999999999999999997
Q ss_pred h
Q psy6018 95 S 95 (111)
Q Consensus 95 ~ 95 (111)
+
T Consensus 115 ~ 115 (361)
T KOG3955|consen 115 E 115 (361)
T ss_pred e
Confidence 6
No 3
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=98.34 E-value=5.4e-09 Score=73.78 Aligned_cols=73 Identities=32% Similarity=0.409 Sum_probs=39.8
Q ss_pred eecCCCcEEEEEEeeccCCceeeeeeeccCCCCCCcccccCceeeeecCCCCCCeeEEEeeeceeeeccccchhhh--hh
Q psy6018 18 FDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSRYSTGWKCGLHADWTEL--TS 95 (111)
Q Consensus 18 Fdi~~~dViVfLHIQKTgGTtFgrhLV~~l~l~~pC~c~~~~Krc~C~rP~~~etWLFSRyStGW~CGLHADwTEL--t~ 95 (111)
|-|..++.|||+||+|||||++..-|-.... + .+.+..|..++.|+..++..+|.+...++++++ ..
T Consensus 3 ~~~~~~~~i~f~~ipK~g~Ts~~~~l~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (253)
T PF03567_consen 3 FIISPKHKIIFCHIPKTGGTSLKSILRRLYG----------K-EFTKDNPSIPENWLHFKRYCGWGHIEFRDLSELSRQE 71 (253)
T ss_dssp ----S--EEEE---SSSSHHHHHHHHHHHHH----------G-S---HHHHHHHH-GGG-SEEEEES-----GGGGT-SS
T ss_pred CccCCCCcEEEEecCCHHHHHHHHHHHHHhh----------h-hhhccccccccccccccchhhhhhHHHhHHhhcchhh
Confidence 5677899999999999999999877766533 3 666666777789999999999999999999999 55
Q ss_pred hhhHhhh
Q psy6018 96 CVHSELD 102 (111)
Q Consensus 96 CV~~~l~ 102 (111)
+ +..++
T Consensus 72 ~-~~~~~ 77 (253)
T PF03567_consen 72 F-DRILN 77 (253)
T ss_dssp -------
T ss_pred c-ccccc
Confidence 5 55444
No 4
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=76.30 E-value=5.9 Score=26.90 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=35.3
Q ss_pred cccccccCCCceeeecCCCcEEEEEEeeccCCceeeeeeeccCCC
Q psy6018 5 YENDEATGSNDQRFDINAHDVMVFLHIQKTGGTSFGRHLVSDLDL 49 (111)
Q Consensus 5 y~~~~~~~~~~~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~l~l 49 (111)
|.++..+.++-+-|||.|+..=+.+-|+=..+..|-|++.++-+-
T Consensus 28 f~~ad~v~~~~~vFnI~GN~yRlI~~I~f~~~~v~Ir~igTHaEY 72 (76)
T PF09907_consen 28 FPSADIVKNNRVVFNIGGNKYRLIAKIDFERQIVYIRFIGTHAEY 72 (76)
T ss_pred CcchhhhcCCEEEEEcCCCcEEEEEEEEeCceEEEEEEeecHHHh
Confidence 445555556777899999988888888888999999999877543
No 5
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.82 E-value=7.2 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=33.5
Q ss_pred cCCCceeeecCCCcEEEEEEeeccCCceeeeeeeccCCCC
Q psy6018 11 TGSNDQRFDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQ 50 (111)
Q Consensus 11 ~~~~~~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~l~l~ 50 (111)
..++.+-|||+|++.=+.+||----+--|.|+++++-+-.
T Consensus 52 ~~Dnr~Vfdi~GN~yRLIvhv~y~~~ki~IkfvgTHkEYD 91 (98)
T COG4680 52 YLDNRVVFDIGGNKYRLIVHVAYEFHKIFIKFVGTHKEYD 91 (98)
T ss_pred eccceEEEEcCCCEEEEEEEEEeecceEEeeeeecchhhh
Confidence 4566777999999999999998888889999998876644
No 6
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=45.13 E-value=9.1 Score=32.56 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=21.1
Q ss_pred EEEEEEeeccCCceeeeeeec-----cCCCCCCcc
Q psy6018 25 VMVFLHIQKTGGTSFGRHLVS-----DLDLQRPCS 54 (111)
Q Consensus 25 ViVfLHIQKTgGTtFgrhLV~-----~l~l~~pC~ 54 (111)
=||||..-|||+||+--=|-| +|..--|-.
T Consensus 68 nIvFlKTHKTgSSTv~nIL~Rfg~~~nL~~alP~~ 102 (402)
T PF06990_consen 68 NIVFLKTHKTGSSTVQNILFRFGEKHNLTFALPRG 102 (402)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEecCCC
Confidence 499999999999997644443 445455533
No 7
>KOG3922|consensus
Probab=36.31 E-value=20 Score=31.36 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=29.0
Q ss_pred cccccccccCCC----ceeeecCCCcEEEEEEeeccCCceeeeeeecc
Q psy6018 3 YDYENDEATGSN----DQRFDINAHDVMVFLHIQKTGGTSFGRHLVSD 46 (111)
Q Consensus 3 y~y~~~~~~~~~----~~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~ 46 (111)
|.|...++.-.+ +..+|..-..|+||.-+-|||.|||=- |.++
T Consensus 54 ~qyl~~~~~t~d~~r~~~~~~~~~~~vViyNRVpKtGStTf~n-iayd 100 (361)
T KOG3922|consen 54 YQYLKSTGQTSDNVRDDNNTDKEEMEVVIYNRVPKTGSTTFVN-IAYD 100 (361)
T ss_pred hhhhccccccccCCCCCcccccccceEEEEecCCCccchhHHH-HHHH
Confidence 445444443333 334777778899999999999999954 4444
No 8
>PF05578 Peptidase_S31: Pestivirus NS3 polyprotein peptidase S31; InterPro: IPR000280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S31 (clan PA(S)). The type example is pestivirus NS3 polyprotein peptidase from bovine viral diarrhea virus, which is Type 1 pestivirus. The pestiviruses are single-stranded RNA viruses whose genomes encode one large polyprotein []. The p80 endopeptidase resides towards the middle of the polyprotein and is responsible for processing all non-structural pestivirus proteins [, ]. The p80 enzyme is similar to other proteases in the PA(S) clan and is predicted to have a fold similar to that of chymotrypsin [, ]. An HDS catalytic triad has been identified [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis
Probab=30.41 E-value=28 Score=28.18 Aligned_cols=18 Identities=44% Similarity=0.780 Sum_probs=13.1
Q ss_pred eeecCC-CcEEEEEEeeccCC
Q psy6018 17 RFDINA-HDVMVFLHIQKTGG 36 (111)
Q Consensus 17 ~Fdi~~-~dViVfLHIQKTgG 36 (111)
.-||+| .+-| +|.|||||
T Consensus 122 a~nisgtkga~--vhlqk~gg 140 (211)
T PF05578_consen 122 ATNISGTKGAM--VHLQKTGG 140 (211)
T ss_pred ccccccCcceE--EEEeccCC
Confidence 356776 5555 49999999
No 9
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=27.69 E-value=31 Score=27.68 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=22.5
Q ss_pred CCCCeeEEEee--eceeeeccccchhhh
Q psy6018 68 NRHEVWLFSRY--STGWKCGLHADWTEL 93 (111)
Q Consensus 68 ~~~etWLFSRy--StGW~CGLHADwTEL 93 (111)
...+.|+|+-. ..|+.|=|||-.||.
T Consensus 73 ~~~~~WvfnnaGGamG~m~iLHaS~tEY 100 (216)
T PF04622_consen 73 SNDSEWVFNNAGGAMGSMCILHASITEY 100 (216)
T ss_pred CCCCceEEECCCchhhhhhhhhhhhHhH
Confidence 55689999975 679999999999997
No 10
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=26.92 E-value=18 Score=31.09 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.8
Q ss_pred CCCCeeEEEee
Q psy6018 68 NRHEVWLFSRY 78 (111)
Q Consensus 68 ~~~etWLFSRy 78 (111)
...|+||-||-
T Consensus 331 ~~~~~Wl~~~~ 341 (358)
T PF10272_consen 331 QHPETWLSGKC 341 (358)
T ss_pred CChhhhhcCCC
Confidence 45689998763
No 11
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=23.73 E-value=61 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=26.3
Q ss_pred CCCeeEEEeeeceeeecc-ccch------hhhhhhhhHhhhccccccc
Q psy6018 69 RHEVWLFSRYSTGWKCGL-HADW------TELTSCVHSELDKNEGHVQ 109 (111)
Q Consensus 69 ~~etWLFSRyStGW~CGL-HADw------TELt~CV~~~l~k~~g~~~ 109 (111)
..+.||-|+ |.|+.=.. -+.| .||..++...|.+.-|..+
T Consensus 54 ~~QIWlasp-sG~~hF~~~~~~Wi~~r~g~~l~~~L~~~~~~~~g~~v 100 (102)
T TIGR03421 54 LHQIWLAAK-SGGFHFDYDGGAWIDTRDGEELWALLARACSEQAGEPV 100 (102)
T ss_pred hhhheeecC-CCCccceecCCEEEECCCCcHHHHHHHHHHHHHhCCcc
Confidence 456999999 76642111 0223 4788888888888877665
No 12
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=23.60 E-value=58 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=13.6
Q ss_pred cCCCcEEEEEEeeccCCceeeee
Q psy6018 20 INAHDVMVFLHIQKTGGTSFGRH 42 (111)
Q Consensus 20 i~~~dViVfLHIQKTgGTtFgrh 42 (111)
|...+-+||+| ||| ++|++
T Consensus 311 ~~~~~~vv~~h---tgg-~~~~~ 329 (337)
T PRK12390 311 FPEGSKVLYAH---LGG-VPALN 329 (337)
T ss_pred CCCCCeEEEEe---CCC-hHhhh
Confidence 44566899999 899 55543
No 13
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=22.34 E-value=30 Score=22.32 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=12.0
Q ss_pred eeceeeeccccchhhh--hhhhh
Q psy6018 78 YSTGWKCGLHADWTEL--TSCVH 98 (111)
Q Consensus 78 yStGW~CGLHADwTEL--t~CV~ 98 (111)
||+|| |=-+-=++. .+|.+
T Consensus 4 FSp~W--GKRs~~~~~~~~~C~~ 24 (48)
T PF06377_consen 4 FSPGW--GKRSAGARGRADDCKS 24 (48)
T ss_pred cCCCc--ccccccCCCCCCCCCC
Confidence 89999 765544444 55654
No 14
>KOG3489|consensus
Probab=21.73 E-value=45 Score=23.99 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.7
Q ss_pred hhhhhhhhHhhhc
Q psy6018 91 TELTSCVHSELDK 103 (111)
Q Consensus 91 TELt~CV~~~l~k 103 (111)
|=|++||+++||-
T Consensus 56 ~ClsnCV~RfiDt 68 (86)
T KOG3489|consen 56 TCLSNCVNRFIDT 68 (86)
T ss_pred HHHHHHHHHHHHH
Confidence 4479999999984
No 15
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=21.70 E-value=1e+02 Score=23.71 Aligned_cols=47 Identities=36% Similarity=0.719 Sum_probs=32.5
Q ss_pred EEEEeeccCCceeeeeeeccCCCCCCcccc------c------CceeeeecCCCCCCeeEEE
Q psy6018 27 VFLHIQKTGGTSFGRHLVSDLDLQRPCSCQ------R------KKKRCYCFRPNRHEVWLFS 76 (111)
Q Consensus 27 VfLHIQKTgGTtFgrhLV~~l~l~~pC~c~------~------~~Krc~C~rP~~~etWLFS 76 (111)
.|||+|-=||..|=.||..- + .++|+-. . +--.|.| .|.=+|.-||-
T Consensus 9 ~yL~l~vlgGkAFld~l~~~-~-~~~~s~~~l~l~f~~QRF~S~~Vp~~~-eP~f~e~Flf~ 67 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEP-E-GQVCSTFTLHLHFRGQRFRSKPVPCAC-EPDFNEEFLFE 67 (156)
T ss_pred eEEEEEEeCchhHhhhhhcc-C-CCCceEEEEEEEecCceEecCCccccc-CCCCCCcEEEE
Confidence 69999999999998888642 1 4566431 1 1226777 78777888874
No 16
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=20.96 E-value=95 Score=20.73 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=15.9
Q ss_pred eeeecCCCcEEEEEE-eeccCC
Q psy6018 16 QRFDINAHDVMVFLH-IQKTGG 36 (111)
Q Consensus 16 ~~Fdi~~~dViVfLH-IQKTgG 36 (111)
+-|.+.+..++|.|| .+|++=
T Consensus 60 iif~~~~~~~vvll~gf~Kk~q 81 (95)
T TIGR02683 60 VYFTQRGKVIILLLCGGDKSTQ 81 (95)
T ss_pred EEEEEECCEEEEEEeCEeccCc
Confidence 447888888888888 777763
Done!