Query psy6018
Match_columns 111
No_of_seqs 45 out of 47
Neff 2.6
Searched_HMMs 29240
Date Sat Aug 17 00:26:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5f_A Maltose-binding peripla 74.8 0.43 1.5E-05 39.2 -0.9 24 20-43 372-395 (658)
2 2kgh_A Venom peptide 2; insect 37.1 15 0.00052 22.1 1.4 8 79-86 26-33 (39)
3 3o38_A Short chain dehydrogena 25.8 9.7 0.00033 26.8 -0.9 26 17-48 17-44 (266)
4 2pk3_A GDP-6-deoxy-D-LYXO-4-he 24.2 10 0.00034 27.0 -1.1 29 14-48 4-33 (321)
5 3t3l_A Frataxin, mitochondrial 22.7 54 0.0018 23.2 2.5 40 67-109 69-117 (129)
6 1cyd_A Carbonyl reductase; sho 19.5 16 0.00053 25.0 -0.9 25 18-48 3-28 (244)
7 2ehj_A Uracil phosphoribosyltr 18.8 32 0.0011 25.6 0.6 25 15-39 116-140 (208)
8 3oig_A Enoyl-[acyl-carrier-pro 18.5 17 0.00057 25.6 -0.9 25 18-48 3-30 (266)
9 3v2h_A D-beta-hydroxybutyrate 17.8 19 0.00064 26.1 -0.8 38 5-48 8-46 (281)
10 4egb_A DTDP-glucose 4,6-dehydr 17.4 15 0.0005 26.5 -1.5 30 15-50 17-47 (346)
No 1
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=74.77 E-value=0.43 Score=39.24 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.1
Q ss_pred cCCCcEEEEEEeeccCCceeeeee
Q psy6018 20 INAHDVMVFLHIQKTGGTSFGRHL 43 (111)
Q Consensus 20 i~~~dViVfLHIQKTgGTtFgrhL 43 (111)
++.+.+++|+|+-|+|||||...|
T Consensus 372 l~e~~~~~~~~~~k~~~~~~~~l~ 395 (658)
T 3f5f_A 372 EEDDVVIIYNRVPKTASTSFTNIA 395 (658)
T ss_dssp CCSCCEEEECCCSSSSHHHHHHHH
T ss_pred hhccceeecccCCCcchHHHHHHH
Confidence 456779999999999999987643
No 2
>2kgh_A Venom peptide 2; insecticidal peptides, disulfide bond, neurotoxin, secreted, toxin; NMR {Brachypelma ruhnaui}
Probab=37.15 E-value=15 Score=22.14 Aligned_cols=8 Identities=38% Similarity=1.543 Sum_probs=5.7
Q ss_pred eceeeecc
Q psy6018 79 STGWKCGL 86 (111)
Q Consensus 79 StGW~CGL 86 (111)
+-||.|-+
T Consensus 26 ~ggwkck~ 33 (39)
T 2kgh_A 26 TGGWRCKI 33 (39)
T ss_dssp CSSEEEET
T ss_pred cCCceEEE
Confidence 56888854
No 3
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=25.77 E-value=9.7 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.7
Q ss_pred eeecCCCcEEEEEEeeccCCc-e-eeeeeeccCC
Q psy6018 17 RFDINAHDVMVFLHIQKTGGT-S-FGRHLVSDLD 48 (111)
Q Consensus 17 ~Fdi~~~dViVfLHIQKTgGT-t-FgrhLV~~l~ 48 (111)
.++++++-||| |||| . +|++|++.|-
T Consensus 17 ~~~l~~k~vlI------TGasg~GIG~~~a~~l~ 44 (266)
T 3o38_A 17 HGLLKGKVVLV------TAAAGTGIGSTTARRAL 44 (266)
T ss_dssp CSTTTTCEEEE------SSCSSSSHHHHHHHHHH
T ss_pred ccCCCCCEEEE------ECCCCCchHHHHHHHHH
Confidence 36788887777 9996 4 9999998764
No 4
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=24.23 E-value=10 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=15.6
Q ss_pred CceeeecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 14 NDQRFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 14 ~~~~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
+++.|.-+..-||| ||||- +|++|++.|.
T Consensus 4 ~~~~~~~~~~~vlV------TGatG~iG~~l~~~L~ 33 (321)
T 2pk3_A 4 SHHHHHHGSMRALI------TGVAGFVGKYLANHLT 33 (321)
T ss_dssp ---------CEEEE------ETTTSHHHHHHHHHHH
T ss_pred cccccccCcceEEE------ECCCChHHHHHHHHHH
Confidence 45667777777776 78875 4999998875
No 5
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=22.66 E-value=54 Score=23.16 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=28.6
Q ss_pred CCCCCeeEEEeeece---------eeeccccchhhhhhhhhHhhhccccccc
Q psy6018 67 PNRHEVWLFSRYSTG---------WKCGLHADWTELTSCVHSELDKNEGHVQ 109 (111)
Q Consensus 67 P~~~etWLFSRyStG---------W~CGLHADwTELt~CV~~~l~k~~g~~~ 109 (111)
|+ .+.||-|+.|-| |.|-=-+ .||.+++.+++.+.-|..+
T Consensus 69 P~-~QIWLASp~SGp~hfd~~~~~Wi~~rdg--~~L~~~L~~el~~~~g~~v 117 (129)
T 3t3l_A 69 PN-KAIWLSSPSSGPKRYDWTGKNWVYSHDG--VSLHELLAAELTKALKTKL 117 (129)
T ss_dssp TT-TEEEEECSSSCCEEEEECSSSEEETTTC--CBHHHHHHHHHHHHHTSCC
T ss_pred hh-hHhheeCCCCCCeeeEecCCEEEECCCC--chHHHHHHHHHHHHhCCce
Confidence 44 469999997665 5553222 5888899999888877655
No 6
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=19.49 E-value=16 Score=25.03 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=17.6
Q ss_pred eecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 18 FDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 18 Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
++++++-|+| ||||. +|++|++.|.
T Consensus 3 ~~~~~~~vlV------TGasggiG~~~a~~l~ 28 (244)
T 1cyd_A 3 LNFSGLRALV------TGAGKGIGRDTVKALH 28 (244)
T ss_dssp CCCTTCEEEE------ESTTSHHHHHHHHHHH
T ss_pred cCCCCCEEEE------eCCCchHHHHHHHHHH
Confidence 5667776665 77764 5888888764
No 7
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=18.80 E-value=32 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.3
Q ss_pred ceeeecCCCcEEEEEEeeccCCcee
Q psy6018 15 DQRFDINAHDVMVFLHIQKTGGTSF 39 (111)
Q Consensus 15 ~~~Fdi~~~dViVfLHIQKTgGTtF 39 (111)
++..|+++++|||.==|=-||||..
T Consensus 116 ~lp~di~~r~VilvDd~laTG~T~~ 140 (208)
T 2ehj_A 116 KLVSNIDERMALIVDPMLATGGSVI 140 (208)
T ss_dssp ECCSCGGGCEEEEEEEEESSCHHHH
T ss_pred CCCCccCCCEEEEECCccccHHHHH
Confidence 4456899999999999999999853
No 8
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=18.45 E-value=17 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=18.9
Q ss_pred eecCCCcEEEEEEeeccCCce---eeeeeeccCC
Q psy6018 18 FDINAHDVMVFLHIQKTGGTS---FGRHLVSDLD 48 (111)
Q Consensus 18 Fdi~~~dViVfLHIQKTgGTt---FgrhLV~~l~ 48 (111)
|+++++-||| |||+. +|+.|++.|-
T Consensus 3 ~~l~~k~vlV------TGasg~~GIG~~ia~~l~ 30 (266)
T 3oig_A 3 FSLEGRNIVV------MGVANKRSIAWGIARSLH 30 (266)
T ss_dssp SCCTTCEEEE------ECCCSTTSHHHHHHHHHH
T ss_pred cccCCCEEEE------EcCCCCCcHHHHHHHHHH
Confidence 5677887776 88864 6998888764
No 9
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=17.77 E-value=19 Score=26.13 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=18.5
Q ss_pred cccccccCCCceeeecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 5 YENDEATGSNDQRFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 5 y~~~~~~~~~~~~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
.++....+.+.+-.++.++-||| |||+. +|+.|++.|-
T Consensus 8 ~~~~~~~~~n~~~~~l~~k~~lV------TGas~GIG~~ia~~la 46 (281)
T 3v2h_A 8 SSGVDLGTENLYFQSMMTKTAVI------TGSTSGIGLAIARTLA 46 (281)
T ss_dssp --------------CCTTCEEEE------ETCSSHHHHHHHHHHH
T ss_pred cccccccccchhhhccCCCEEEE------eCCCcHHHHHHHHHHH
Confidence 44555556666667888887777 78765 6888888764
No 10
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=17.45 E-value=15 Score=26.50 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=16.6
Q ss_pred ceeeecCCCcEEEEEEeeccCCce-eeeeeeccCCCC
Q psy6018 15 DQRFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLDLQ 50 (111)
Q Consensus 15 ~~~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~l~ 50 (111)
+.-|.+++.-|+| ||||- +|++|++.|.-.
T Consensus 17 n~~~~~~~~~vlV------tGatG~iG~~l~~~L~~~ 47 (346)
T 4egb_A 17 NLYFQSNAMNILV------TGGAGFIGSNFVHYMLQS 47 (346)
T ss_dssp -------CEEEEE------ETTTSHHHHHHHHHHHHH
T ss_pred ccccccCCCeEEE------ECCccHHHHHHHHHHHhh
Confidence 4556777766666 78864 599999887543
Done!