Query psy6018
Match_columns 111
No_of_seqs 45 out of 47
Neff 2.6
Searched_HMMs 13730
Date Sat Aug 17 00:27:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i9wa3 g.74.1.1 (A:159-183) H 59.9 1.4 0.0001 23.4 0.8 16 47-62 3-20 (26)
2 d2nn6c2 d.101.1.1 (C:188-276) 39.1 8.9 0.00065 22.7 2.3 28 15-44 34-61 (89)
3 d2bkaa1 c.2.1.2 (A:5-236) TAT- 38.7 1.1 8.2E-05 29.8 -2.3 26 17-48 9-35 (232)
4 d2ae2a_ c.2.1.2 (A:) Tropinone 33.4 2.3 0.00017 29.5 -1.4 26 17-48 3-29 (259)
5 d1xq1a_ c.2.1.2 (A:) Tropinone 31.6 2.8 0.00021 29.1 -1.2 27 16-48 2-29 (259)
6 d1dkua2 c.61.1.2 (A:167-315) P 27.5 9 0.00066 25.4 0.9 21 19-39 47-67 (149)
7 d1h5qa_ c.2.1.2 (A:) Mannitol 26.9 4.6 0.00034 27.6 -0.7 29 15-49 2-31 (260)
8 d1ae1a_ c.2.1.2 (A:) Tropinone 26.5 4.4 0.00032 28.1 -0.9 26 17-48 1-27 (258)
9 d2ba0g2 d.101.1.1 (G:179-257) 23.5 35 0.0026 19.6 3.1 29 13-43 31-59 (79)
10 d1qo7a_ c.69.1.11 (A:) Bacteri 23.4 12 0.00086 26.2 0.9 34 2-36 69-104 (394)
11 d1eq2a_ c.2.1.2 (A:) ADP-L-gly 22.2 3.6 0.00026 26.7 -1.9 15 34-48 5-20 (307)
12 d1mv5a_ c.37.1.12 (A:) Multidr 21.8 19 0.0014 25.1 1.8 44 2-46 8-51 (242)
13 d1ew4a_ d.82.2.1 (A:) CyaY {Es 21.2 17 0.0012 23.1 1.3 40 67-109 55-103 (106)
14 d1nsca_ b.68.1.1 (A:) Influenz 20.6 38 0.0027 26.8 3.5 40 51-90 199-249 (390)
15 d2nn6e2 d.101.1.1 (E:192-285) 20.4 13 0.00093 22.3 0.5 27 15-43 34-60 (94)
16 d1u9ya2 c.61.1.2 (A:156-284) P 20.4 24 0.0017 22.6 1.9 23 17-39 45-67 (129)
17 d1s55a1 b.22.1.1 (A:161-316) T 20.2 57 0.0041 20.7 3.9 30 18-48 120-156 (156)
No 1
>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=59.95 E-value=1.4 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=11.5
Q ss_pred CCCCCCcccccC--ceee
Q psy6018 47 LDLQRPCSCQRK--KKRC 62 (111)
Q Consensus 47 l~l~~pC~c~~~--~Krc 62 (111)
+...+||.|..+ .|||
T Consensus 3 ~tqkqpcicgsgekfkrc 20 (26)
T d2i9wa3 3 VTQKQPCICGSGEKFKRC 20 (26)
T ss_dssp CCTTSBCTTSCSSBGGGT
T ss_pred ccccCCeeecCchHHHhh
Confidence 456789999765 5576
No 2
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.06 E-value=8.9 Score=22.72 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=17.2
Q ss_pred ceeeecCCCcEEEEEEeeccCCceeeeeee
Q psy6018 15 DQRFDINAHDVMVFLHIQKTGGTSFGRHLV 44 (111)
Q Consensus 15 ~~~Fdi~~~dViVfLHIQKTgGTtFgrhLV 44 (111)
.+.+=++++.=| ..+||+||+.|....+
T Consensus 34 ~lti~~~~~g~i--~~l~k~G~~~l~~~~l 61 (89)
T d2nn6c2 34 TLTIVMDEEGKL--CCLHKPGGSGLTGAKL 61 (89)
T ss_dssp EEEEEECTTCCE--EEEEESCCSCCCHHHH
T ss_pred eEEEEEcCCCCE--EEEEecCCcccCHHHH
Confidence 555556554333 5678999987765443
No 3
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.69 E-value=1.1 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=20.9
Q ss_pred eeecCCCcEEEEEEeeccCCc-eeeeeeeccCC
Q psy6018 17 RFDINAHDVMVFLHIQKTGGT-SFGRHLVSDLD 48 (111)
Q Consensus 17 ~Fdi~~~dViVfLHIQKTgGT-tFgrhLV~~l~ 48 (111)
+|.|+++.||| |||| .+|++||+.|.
T Consensus 9 ~~~m~~k~IlI------tGaTG~iG~~l~~~Ll 35 (232)
T d2bkaa1 9 DFRMQNKSVFI------LGASGETGRVLLKEIL 35 (232)
T ss_dssp HHHHTCCEEEE------ECTTSHHHHHHHHHHH
T ss_pred HhCCCCCEEEE------ECCCcHHHHHHHHHHH
Confidence 47899998888 5877 57999999864
No 4
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}
Probab=33.42 E-value=2.3 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=20.9
Q ss_pred eeecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 17 RFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 17 ~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
+||++|+-+|| |||+. +|+.+++.+-
T Consensus 3 ~f~L~GK~alI------TGas~GIG~aia~~la 29 (259)
T d2ae2a_ 3 RWNLEGCTALV------TGGSRGIGYGIVEELA 29 (259)
T ss_dssp TTCCTTCEEEE------ESCSSHHHHHHHHHHH
T ss_pred CcCCCCCEEEE------eCCCCHHHHHHHHHHH
Confidence 48999998888 67765 8888887764
No 5
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.58 E-value=2.8 Score=29.12 Aligned_cols=27 Identities=41% Similarity=0.793 Sum_probs=21.3
Q ss_pred eeeecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 16 QRFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 16 ~~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
.+||++|+-||| |||+. +|+-+++.+-
T Consensus 2 ~~F~LkgK~alV------TGas~GIG~aiA~~la 29 (259)
T d1xq1a_ 2 QRWSLKAKTVLV------TGGTKGIGHAIVEEFA 29 (259)
T ss_dssp CTTCCTTCEEEE------TTTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEE------eCCCCHHHHHHHHHHH
Confidence 369999999998 78876 8887776654
No 6
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=27.46 E-value=9 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred ecCCCcEEEEEEeeccCCcee
Q psy6018 19 DINAHDVMVFLHIQKTGGTSF 39 (111)
Q Consensus 19 di~~~dViVfLHIQKTgGTtF 39 (111)
|.+|+|||++==|--||||..
T Consensus 47 dV~gk~viIvDDmi~TGgTl~ 67 (149)
T d1dkua2 47 NIEGKTAILIDDIIDTAGTIT 67 (149)
T ss_dssp CCTTCEEEEECSEESSCHHHH
T ss_pred eeCCCEEEEEhhhhhchHhHH
Confidence 678999999999999999754
No 7
>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}
Probab=26.92 E-value=4.6 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.9
Q ss_pred ceeeecCCCcEEEEEEeeccCCce-eeeeeeccCCC
Q psy6018 15 DQRFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLDL 49 (111)
Q Consensus 15 ~~~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~l 49 (111)
.+.||++|+-||| |||+. +|+.+++.|--
T Consensus 2 ~~~m~l~gK~alI------TGas~GIG~aia~~la~ 31 (260)
T d1h5qa_ 2 GFTISFVNKTIIV------TGGNRGIGLAFTRAVAA 31 (260)
T ss_dssp CEEECCTTEEEEE------ETTTSHHHHHHHHHHHH
T ss_pred CCcccCCCCEEEE------eCCCCHHHHHHHHHHHH
Confidence 3677888998887 77776 88888877643
No 8
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}
Probab=26.53 E-value=4.4 Score=28.07 Aligned_cols=26 Identities=31% Similarity=0.693 Sum_probs=20.5
Q ss_pred eeecCCCcEEEEEEeeccCCce-eeeeeeccCC
Q psy6018 17 RFDINAHDVMVFLHIQKTGGTS-FGRHLVSDLD 48 (111)
Q Consensus 17 ~Fdi~~~dViVfLHIQKTgGTt-FgrhLV~~l~ 48 (111)
+||++|+-||| ||||. +|+-+++.+.
T Consensus 1 ~f~L~gK~alI------TGas~GIG~aia~~la 27 (258)
T d1ae1a_ 1 RWSLKGTTALV------TGGSKGIGYAIVEELA 27 (258)
T ss_dssp CCCCTTCEEEE------ESCSSHHHHHHHHHHH
T ss_pred CcCCCCCEEEE------eCCCCHHHHHHHHHHH
Confidence 59999999998 57665 8888887754
No 9
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.54 E-value=35 Score=19.59 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=18.3
Q ss_pred CCceeeecCCCcEEEEEEeeccCCceeeeee
Q psy6018 13 SNDQRFDINAHDVMVFLHIQKTGGTSFGRHL 43 (111)
Q Consensus 13 ~~~~~Fdi~~~dViVfLHIQKTgGTtFgrhL 43 (111)
...+.+=+|.++=| ..+||.||..|-...
T Consensus 31 ~~~iti~~~~~g~i--~~~~k~G~~~~~~~~ 59 (79)
T d2ba0g2 31 DTTLTITTDKDDNV--VAMQKSGGYLLDEKL 59 (79)
T ss_dssp SCEEEEEECTTSCE--EEEEEESSCCBCHHH
T ss_pred CceEEEEEcCCCCE--EEEEccCCCCcCHHH
Confidence 34566666655434 357899998875543
No 10
>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}
Probab=23.38 E-value=12 Score=26.16 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=21.7
Q ss_pred CcccccccccCCCc--eeeecCCCcEEEEEEeeccCC
Q psy6018 2 SYDYENDEATGSND--QRFDINAHDVMVFLHIQKTGG 36 (111)
Q Consensus 2 ~y~y~~~~~~~~~~--~~Fdi~~~dViVfLHIQKTgG 36 (111)
.||....|+.+|.- +.-+|+|-+ |=|+|+..+++
T Consensus 69 ~~dw~~~e~~ln~~~~f~~~i~G~~-iHf~h~~~~~~ 104 (394)
T d1qo7a_ 69 EFDWRPFEARLNSFPQFTTEIEGLT-IHFAALFSERE 104 (394)
T ss_dssp TCCHHHHHHHHTTSCEEEEEETTEE-EEEEEECCSCT
T ss_pred cCCHHHHHHHHHcCCCeEEEECCEE-EEEEEEeccCC
Confidence 47788888888873 344677754 44667755443
No 11
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=22.22 E-value=3.6 Score=26.66 Aligned_cols=15 Identities=47% Similarity=0.966 Sum_probs=12.7
Q ss_pred cCCcee-eeeeeccCC
Q psy6018 34 TGGTSF-GRHLVSDLD 48 (111)
Q Consensus 34 TgGTtF-grhLV~~l~ 48 (111)
||||=| |.|||+.|.
T Consensus 5 TGgsGfIGs~lv~~L~ 20 (307)
T d1eq2a_ 5 TGGAGFIGSNIVKALN 20 (307)
T ss_dssp ETTTSHHHHHHHHHHH
T ss_pred ecCccHHHHHHHHHHH
Confidence 899876 999998865
No 12
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=21.82 E-value=19 Score=25.11 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.7
Q ss_pred CcccccccccCCCceeeecCCCcEEEEEEeeccCCceeeeeeecc
Q psy6018 2 SYDYENDEATGSNDQRFDINAHDVMVFLHIQKTGGTSFGRHLVSD 46 (111)
Q Consensus 2 ~y~y~~~~~~~~~~~~Fdi~~~dViVfLHIQKTgGTtFgrhLV~~ 46 (111)
||.|++...+++ ++.|+|+....+..+=--=.|=||+-+-|..-
T Consensus 8 sf~Y~~~~~vL~-~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 8 DFAYDDSEQILR-DISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EECSSSSSCSEE-EEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEECCCCCceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 788987766665 78999998888887755555556666655443
No 13
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=21.22 E-value=17 Score=23.05 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCCCCeeEEEeeece---------eeeccccchhhhhhhhhHhhhccccccc
Q psy6018 67 PNRHEVWLFSRYSTG---------WKCGLHADWTELTSCVHSELDKNEGHVQ 109 (111)
Q Consensus 67 P~~~etWLFSRyStG---------W~CGLHADwTELt~CV~~~l~k~~g~~~ 109 (111)
|...+.||-|+ |.| |.|-= |=.+|..++..+|.+..|..+
T Consensus 55 ~p~~QIWlaSp-sgg~hf~~~~~~Wi~~r--~g~~L~~~L~~el~~~~G~~v 103 (106)
T d1ew4a_ 55 EPLHQVWLATK-QGGYHFDLKGDEWICDR--SGETFWDLLEQAATQQAGETV 103 (106)
T ss_dssp TTTTEEEEECS-SCEEEEEEETTEEEETT--TCCBHHHHHHHHHHHHHTSCC
T ss_pred CccceeeEECC-CCCccccccCCEEEECC--CChHHHHHHHHHHHHHhCCCe
Confidence 33456888887 655 44422 224788899999888877655
No 14
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]}
Probab=20.59 E-value=38 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCccc-cc--CceeeeecCC--CCCCeeE-EE----eeeceeee-ccccch
Q psy6018 51 RPCSC-QR--KKKRCYCFRP--NRHEVWL-FS----RYSTGWKC-GLHADW 90 (111)
Q Consensus 51 ~pC~c-~~--~~Krc~C~rP--~~~etWL-FS----RyStGW~C-GLHADw 90 (111)
--|+| -+ ++-+|.|--. ++|-.|+ |. -|..|.+| ||++|=
T Consensus 199 EECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gYvCSGl~~DT 249 (390)
T d1nsca_ 199 EECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRLMCTETYLDT 249 (390)
T ss_dssp EEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEECCCSSCCSS
T ss_pred EeeeccCCCCCceEEEEeCCCCCCCCCeEEeccccceeeeeeEeccccCCC
Confidence 36999 32 3558999433 3567786 33 47778888 788773
No 15
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.44 E-value=13 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=17.7
Q ss_pred ceeeecCCCcEEEEEEeeccCCceeeeee
Q psy6018 15 DQRFDINAHDVMVFLHIQKTGGTSFGRHL 43 (111)
Q Consensus 15 ~~~Fdi~~~dViVfLHIQKTgGTtFgrhL 43 (111)
.+.+=++.+.-|+ -|||+||..|-...
T Consensus 34 ~l~v~~~~~g~i~--~l~k~G~~~l~~~~ 60 (94)
T d2nn6e2 34 SLLVSVTSKGVVT--CMRKVGKGSLDPES 60 (94)
T ss_dssp EEEECCCSSSCCC--EEEEEESSCBCHHH
T ss_pred eEEEEEcCCCcEE--EEEecCCCccCHHH
Confidence 5556666665544 48999998775443
No 16
>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=20.39 E-value=24 Score=22.58 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeecCCCcEEEEEEeeccCCcee
Q psy6018 17 RFDINAHDVMVFLHIQKTGGTSF 39 (111)
Q Consensus 17 ~Fdi~~~dViVfLHIQKTgGTtF 39 (111)
.-|.+|++||+.==|=-||||..
T Consensus 45 ~gdv~gk~viIvDDii~TGgTl~ 67 (129)
T d1u9ya2 45 TLDAKDRDVFIVDDIISTGGTMA 67 (129)
T ss_dssp SCCCTTCCEEEEEEECSSSHHHH
T ss_pred cccccceEEEEEcchhcccccHH
Confidence 35789999999999999999754
No 17
>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.17 E-value=57 Score=20.74 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=22.9
Q ss_pred eecCCCcEEEEEEee-------ccCCceeeeeeeccCC
Q psy6018 18 FDINAHDVMVFLHIQ-------KTGGTSFGRHLVSDLD 48 (111)
Q Consensus 18 Fdi~~~dViVfLHIQ-------KTgGTtFgrhLV~~l~ 48 (111)
|.+...|.| ++++. .-+-|-||=++|.+|+
T Consensus 120 f~L~~gD~l-~V~v~~~~~v~~~~~~TfFG~f~l~~~~ 156 (156)
T d1s55a1 120 FKLRAGEEI-SIQVSNPSLLDPDQDATYFGAFKVQDID 156 (156)
T ss_dssp EEECTTEEE-EEEESCGGGBCCCTTTSEEEEEEEECCC
T ss_pred EEecCCCEE-EEEeCChhhcccCCCCEEEEEEEeccCC
Confidence 888888877 67763 2467889999999875
Done!