RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6018
         (111 letters)



>gnl|CDD|217617 pfam03567, Sulfotransfer_2, Sulfotransferase family.  This family
           includes a variety of sulfotransferase enzymes.
           Chondroitin 6-sulfotransferase catalyzes the transfer of
           sulfate to position 6 of the N-acetylgalactosamine
           residue of chondroitin. This family also includes
           Heparan sulfate 2-O-sulfotransferase (HS2ST) and Heparan
           sulfate 6-sulfotransferase (HS6ST). Heparan sulfate (HS)
           is a co-receptor for a number of growth factors,
           morphogens, and adhesion proteins. HS biosynthetic
           modifications may determine the strength and outcome of
           HS-ligand interactions. Mice that lack HS2ST undergo
           developmental failure only after midgestation,the most
           dramatic effect being the complete failure of kidney
           development. Heparan sulphate 6- O -sulfotransferase
           (HS6ST) catalyzes the transfer of sulphate from
           adenosine 3'-phosphate, 5'-phosphosulphate to the 6th
           position of the N -sulphoglucosamine residue in heparan
           sulphate.
          Length = 238

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 23  HDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSRYSTGW 82
              +V+  + K   TS+ R L     L         + +      + ++ W  S+ S GW
Sbjct: 3   DHKIVYCRVPKVASTSWKRILC---VLY-------GENKFLADNRSINDTWAHSKRSCGW 52

Query: 83  KCGLHADWTELTSCVHSELDKN 104
             G   D +ELTSC   +  + 
Sbjct: 53  SHGSFRDLSELTSCEIRKRLRK 74


>gnl|CDD|216641 pfam01673, Herpes_env, Herpesvirus putative major envelope
           glycoprotein.  This family consists of probable major
           envelope glycoproteins from members of the herpesviridae
           including herpes simplex virus, human cytomegalovirus
           and varicella-zoster virus. Members of the herpesviridae
           have a dsDNA genome and do not have a RNA stage during
           there replication.
          Length = 483

 Score = 25.7 bits (57), Expect = 5.4
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)

Query: 28  FLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNR 69
           F       G  F   +++ +D+Q      R      CFRP  
Sbjct: 112 FPDAHGDTG-LFAPRVLTLIDIQLHFFIHR------CFRPTT 146


>gnl|CDD|225347 COG2733, COG2733, Predicted membrane protein [Function unknown].
          Length = 415

 Score = 25.4 bits (56), Expect = 8.0
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 19  DINAHDVMVFLHIQKTGGTSFGRHLVSDLDL 49
           D  + D M+   + +    S G  L++D  L
Sbjct: 309 DYESEDSMLRKRLARAV-QSVGEELIADDAL 338


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.456 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,420,878
Number of extensions: 417012
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)