RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6018
         (111 letters)



>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative,
          structural genomics, MI center for structural genomics
          (MCSG); 2.54A {Bacteroides thetaiotaomicron}
          Length = 103

 Score = 28.0 bits (62), Expect = 0.37
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 68 NRHEVWLFSRYSTGWKCGLHADWTELT 94
          N HEVW  +R   GW  G   D     
Sbjct: 37 NVHEVWAKARIDEGWTYGEKRDDIHKK 63


>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
          1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
          3rqr_A
          Length = 210

 Score = 27.8 bits (61), Expect = 0.71
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 68 NRHEVWLFSRYSTGWKCGLHADWTELT 94
            HE W F +    W  G + D    T
Sbjct: 31 YTHEKWAFDKIQNNWMYGENVDEELKT 57



 Score = 25.9 bits (56), Expect = 2.7
 Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 5/32 (15%)

Query: 68  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 94
           N H  W   +       G   H     +  LT
Sbjct: 151 NYHNTWGRKKKQELEAKGGGTHPLLVPYDTLT 182


>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
          Length = 207

 Score = 27.4 bits (60), Expect = 0.77
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 68 NRHEVWLFSRYSTGWKCGLHADWTELTS 95
          + H+ W   +  +GWK G+  D    T 
Sbjct: 31 HSHDKWACDKSQSGWKYGISLDENVKTH 58



 Score = 27.4 bits (60), Expect = 1.0
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)

Query: 68  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 94
           N H +W   +       G   H     +  LT
Sbjct: 149 NYHNIWAKKKKLELESKGGGSHPLLVPYDTLT 180


>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein,
           glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare}
           SCOP: c.1.8.3 PDB: 1ghr_A
          Length = 306

 Score = 27.4 bits (60), Expect = 0.86
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 57  RKKKRCYCFRPNRHEVWLFSRYSTGWKCG 85
               R     P   E ++F+ ++   K  
Sbjct: 257 NHVGRGTPRHPGAIETYIFAMFNENQKDS 285


>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport;
          1.65A {Mus musculus}
          Length = 209

 Score = 27.4 bits (60), Expect = 1.1
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 68 NRHEVWLFSRYSTGWKCGLHADWTELT 94
          + H+ W   + + GW  G     +   
Sbjct: 31 HSHDKWSMDKLANGWIYGEIYSDSSKI 57



 Score = 26.2 bits (57), Expect = 2.2
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)

Query: 68  NRHEVWLFSRYSTGWKCG--LHAD---WTELT 94
           N H +W   +       G   H     +  LT
Sbjct: 151 NYHNIWAKKKKLELESKGGGNHPLLVPYDTLT 182


>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
           phosphorolytic, hydrolase/transferase complex; 3.35A
           {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
          Length = 358

 Score = 25.0 bits (54), Expect = 6.0
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 28  FLHIQKTGGTSFGRHLVSDL 47
              IQ +GG    +  V   
Sbjct: 248 ICTIQSSGGIMLLKDQVLRC 267


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 7.9
 Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 16/58 (27%)

Query: 20  INAHDVMVFLHIQKTGGTS----FGRHL-----VSDLDLQR-PCSCQRKKKRCYCFRP 67
           +N    +V      +G           L      S LD  R P S +RK K    F P
Sbjct: 371 VNGAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLP 422


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.456 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,699,742
Number of extensions: 83069
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 10
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)