RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6018
         (111 letters)



>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Oligotropha carboxidovorans, formerly
           Pseudomonas carboxydovorans [TaxId: 40137]}
          Length = 663

 Score = 28.4 bits (62), Expect = 0.16
 Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 3/83 (3%)

Query: 18  FDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSR 77
             +  H + V   I    G  FG  + +                   +  +R E    + 
Sbjct: 107 SGLPEHKIHV---IAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTS 163

Query: 78  YSTGWKCGLHADWTELTSCVHSE 100
           ++  +        T+    +   
Sbjct: 164 FARDYHMTTELAATKDGKILAMR 186


>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
           subunit QorL {Pseudomonas putida [TaxId: 303]}
          Length = 621

 Score = 24.2 bits (51), Expect = 5.7
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 18  FDINAHDVMVFLHIQKTGGTSFGRHLVSDLDLQRPCSCQRKKKRCYCFRPNRHEVWLFSR 77
             I  H + V        G  FG+      +    C   R   R   +  +R E +L + 
Sbjct: 72  CAIPEHLIEV---RVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGAT 128

Query: 78  YSTGWKCGLHADWTELTSCVHSE 100
           ++   +  +   +      +  E
Sbjct: 129 HAKQQRNEMGLAFDGDGRFLALE 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.456 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,405
Number of extensions: 17547
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)