BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6019
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
           Absence Of Calcium
 pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
 pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
           Tg
 pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
           The Absence Of Calcium
 pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
           The Absence Of Calcium
 pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
 pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
 pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
           The Absence Of Ca2+
 pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
 pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
           In The Absence Of Calcium
 pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
           In The Absence Of Ca2+
 pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
           And Tg
 pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
           And Tg In The Absence Of Calcium
 pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
           Aluminium Fluoride, Adp And Calcium
          Length = 995

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 103 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 155


>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
 pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
           Ions
 pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
 pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
 pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
 pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Boc-12adt.
 pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
           Form
 pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
           Partially Occupied Amppcp Site
 pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
 pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
           Fluoride And Cyclopiazonic Acid
 pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
           Cyclopiazonic Acid
 pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
           Serca Ca2+-Atpase
 pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
 pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
           The Presence Of Curcumin
 pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic Acid With Atp
 pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic And Adp
 pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dtb
 pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dotg
 pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
           Thapsigargin Derivative Boc-(Phi)tg
 pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
 pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
           Thapsigargin
          Length = 994

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154


>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
           (Serca) From Bovine Muscle
          Length = 992

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154


>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
           Serca Ca2+-Atpase
          Length = 994

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154


>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
          Length = 992

 Score = 31.6 bits (70), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 43  YQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEV 90
           Y +E  +   +E+ K   P+   VIR G+K     + A+E+V GD+VEV
Sbjct: 117 YYQEAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEV 162


>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
 pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
          Length = 998

 Score = 31.6 bits (70), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 43  YQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEV 90
           Y +E  +   +E+ K   P+   VIR G+K     + A+E+V GD+VEV
Sbjct: 123 YYQEAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEV 168


>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
 pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
          Length = 920

 Score = 30.0 bits (66), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           A+  + +E  A S ++ LK+       V+R     ++++ A E+VPGDI++V E
Sbjct: 155 AVVGFVQEFQAGSIVDELKKTLALKAVVLR--DGTLKEIEAPEVVPGDILQVEE 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.125    0.327 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,132,133
Number of Sequences: 62578
Number of extensions: 61594
Number of successful extensions: 194
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)