Query psy6019
Match_columns 93
No_of_seqs 129 out of 1018
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:27:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0202|consensus 99.7 4.1E-19 9E-24 141.5 0.8 80 4-91 63-142 (972)
2 TIGR01523 ATPase-IID_K-Na pota 99.7 3.5E-17 7.6E-22 134.4 9.8 81 4-92 66-146 (1053)
3 TIGR01647 ATPase-IIIA_H plasma 99.6 9.9E-16 2.2E-20 122.4 9.7 81 4-92 40-120 (755)
4 TIGR01522 ATPase-IIA2_Ca golgi 99.6 1.9E-15 4E-20 122.5 9.9 81 4-92 65-145 (884)
5 TIGR01116 ATPase-IIA1_Ca sarco 99.6 2.6E-15 5.7E-20 122.0 10.2 88 3-92 10-101 (917)
6 PRK10517 magnesium-transportin 99.6 4.3E-15 9.2E-20 120.7 10.8 81 4-92 107-193 (902)
7 TIGR01524 ATPase-IIIB_Mg magne 99.6 7.2E-15 1.6E-19 119.0 10.8 81 4-92 73-159 (867)
8 PRK15122 magnesium-transportin 99.6 1.4E-14 2.9E-19 117.8 10.1 87 4-92 85-182 (903)
9 TIGR01106 ATPase-IIC_X-K sodiu 99.5 8.3E-14 1.8E-18 114.2 10.2 87 4-92 76-169 (997)
10 COG0474 MgtA Cation transport 99.5 3.6E-14 7.8E-19 115.5 7.2 81 4-92 84-168 (917)
11 TIGR01517 ATPase-IIB_Ca plasma 99.5 2.7E-13 5.9E-18 110.6 10.0 87 4-92 100-194 (941)
12 TIGR01512 ATPase-IB2_Cd heavy 99.5 4.8E-13 1E-17 103.5 10.2 83 2-92 1-83 (536)
13 PRK14010 potassium-transportin 99.4 3E-12 6.6E-17 101.7 9.9 87 4-92 36-133 (673)
14 TIGR01525 ATPase-IB_hvy heavy 99.4 3.9E-12 8.5E-17 98.7 10.2 82 3-92 2-84 (556)
15 PRK11033 zntA zinc/cadmium/mer 99.4 6.6E-12 1.4E-16 100.5 10.2 82 3-92 190-271 (741)
16 TIGR01657 P-ATPase-V P-type AT 99.3 3.4E-11 7.4E-16 99.4 11.4 79 4-91 178-256 (1054)
17 PRK01122 potassium-transportin 99.3 3E-11 6.6E-16 96.1 10.4 88 4-92 37-133 (679)
18 KOG0205|consensus 99.3 1.8E-12 3.9E-17 102.3 2.9 87 4-92 75-162 (942)
19 TIGR01497 kdpB K+-transporting 99.2 1E-10 2.3E-15 93.0 10.3 87 4-92 36-134 (675)
20 PF00122 E1-E2_ATPase: E1-E2 A 99.2 7.4E-11 1.6E-15 81.7 8.3 61 30-92 1-62 (230)
21 KOG0204|consensus 99.1 9.1E-12 2E-16 100.2 1.2 86 4-91 159-247 (1034)
22 PRK10671 copA copper exporting 99.1 4.8E-10 1E-14 90.7 10.3 69 22-92 283-351 (834)
23 TIGR01511 ATPase-IB1_Cu copper 99.1 9.3E-10 2E-14 85.9 10.5 69 22-92 51-120 (562)
24 COG2217 ZntA Cation transport 99.0 4.5E-09 9.7E-14 84.2 10.2 68 23-92 172-240 (713)
25 KOG0203|consensus 98.7 6.4E-10 1.4E-14 89.7 -2.8 86 4-91 98-190 (1019)
26 TIGR01494 ATPase_P-type ATPase 98.6 8.8E-08 1.9E-12 73.5 4.9 58 32-92 3-62 (499)
27 KOG0208|consensus 98.4 2.2E-06 4.7E-11 70.6 8.5 65 25-92 214-278 (1140)
28 TIGR01652 ATPase-Plipid phosph 98.3 6.6E-06 1.4E-10 68.5 9.1 84 2-92 29-114 (1057)
29 KOG0207|consensus 98.2 5.6E-06 1.2E-10 67.7 6.9 71 21-92 337-407 (951)
30 PLN03190 aminophospholipid tra 97.5 0.00079 1.7E-08 57.1 9.3 62 26-92 138-199 (1178)
31 KOG0209|consensus 97.2 0.002 4.4E-08 53.2 7.9 65 24-91 216-280 (1160)
32 COG2216 KdpB High-affinity K+ 97.0 0.0027 5.9E-08 50.2 6.4 63 28-92 69-133 (681)
33 COG1188 Ribosome-associated he 87.0 0.7 1.5E-05 29.0 2.5 28 61-91 31-58 (100)
34 smart00306 HintN Hint (Hedgeho 78.9 3.4 7.4E-05 24.2 3.3 18 74-91 82-99 (100)
35 KOG4383|consensus 78.6 3.5 7.5E-05 34.6 4.0 68 23-92 86-184 (1354)
36 KOG0206|consensus 77.6 2.3 5.1E-05 36.7 3.0 82 3-91 61-143 (1151)
37 PRK11507 ribosome-associated p 77.1 3.9 8.4E-05 24.0 3.0 25 65-91 38-62 (70)
38 PF01959 DHQS: 3-dehydroquinat 74.0 4.6 0.0001 30.6 3.4 27 62-91 309-335 (354)
39 PRK06437 hypothetical protein; 73.1 9.1 0.0002 21.8 3.9 32 58-92 31-62 (67)
40 PF01455 HupF_HypC: HupF/HypC 72.5 12 0.00026 21.6 4.3 29 61-91 16-47 (68)
41 PRK02290 3-dehydroquinate synt 72.3 5.3 0.00011 30.2 3.4 27 62-91 299-325 (344)
42 PRK11479 hypothetical protein; 69.4 1.6 3.5E-05 31.9 0.1 17 75-91 58-74 (274)
43 KOG0210|consensus 69.1 20 0.00043 30.2 6.2 60 24-91 131-190 (1051)
44 TIGR02219 phage_NlpC_fam putat 66.1 4 8.8E-05 26.3 1.5 17 75-91 70-86 (134)
45 COG1935 Uncharacterized conser 65.9 11 0.00024 24.3 3.4 40 49-92 10-49 (122)
46 TIGR02988 YaaA_near_RecF S4 do 63.7 9.1 0.0002 20.9 2.5 23 66-90 36-58 (59)
47 PF04322 DUF473: Protein of un 61.4 25 0.00055 22.6 4.5 40 49-92 10-49 (119)
48 PF13275 S4_2: S4 domain; PDB: 58.7 5.5 0.00012 23.0 1.0 24 66-91 35-58 (65)
49 PF01079 Hint: Hint module; I 58.6 8.8 0.00019 27.0 2.2 28 61-91 14-41 (217)
50 TIGR01017 rpsD_bact ribosomal 58.5 12 0.00027 25.9 2.9 27 64-92 115-141 (200)
51 CHL00113 rps4 ribosomal protei 55.3 14 0.00031 25.7 2.8 27 64-92 114-140 (201)
52 COG0522 RpsD Ribosomal protein 55.1 12 0.00025 26.3 2.3 28 63-92 118-145 (205)
53 cd00081 Hint Hedgehog/Intein d 54.6 22 0.00048 21.9 3.4 17 74-90 82-98 (136)
54 TIGR03028 EpsE polysaccharide 53.8 26 0.00057 24.6 4.0 32 61-92 201-236 (239)
55 PF11384 DUF3188: Protein of u 53.0 36 0.00079 18.4 4.1 43 5-47 5-47 (49)
56 PRK05327 rpsD 30S ribosomal pr 52.8 16 0.00036 25.3 2.8 26 65-92 119-144 (203)
57 COG1465 Predicted alternative 51.6 20 0.00044 27.0 3.2 27 62-91 331-357 (376)
58 TIGR03069 PS_II_S4 photosystem 49.5 33 0.00072 24.7 4.0 26 65-92 209-234 (257)
59 PF13403 Hint_2: Hint domain 48.6 12 0.00026 24.6 1.5 15 76-90 15-29 (147)
60 TIGR01683 thiS thiamine biosyn 48.6 46 0.001 18.3 4.1 31 59-91 25-58 (64)
61 PF01479 S4: S4 domain; Inter 48.4 8.9 0.00019 19.8 0.7 21 66-88 28-48 (48)
62 COG0361 InfA Translation initi 47.4 15 0.00032 21.8 1.6 12 81-92 46-57 (75)
63 PRK15078 polysaccharide export 47.2 20 0.00044 27.2 2.7 27 63-91 212-250 (379)
64 PRK08364 sulfur carrier protei 47.2 52 0.0011 18.6 4.1 30 59-91 35-64 (70)
65 TIGR00074 hypC_hupF hydrogenas 46.4 61 0.0013 19.1 4.5 30 61-92 14-46 (76)
66 PRK10348 ribosome-associated h 45.5 23 0.00051 23.2 2.5 24 65-91 35-58 (133)
67 PRK15175 Vi polysaccharide exp 44.5 23 0.0005 26.8 2.7 28 63-92 199-236 (355)
68 PRK03818 putative transporter; 44.1 1.4E+02 0.0031 23.8 7.1 25 65-91 236-261 (552)
69 PF00877 NLPC_P60: NlpC/P60 fa 43.8 14 0.00031 22.2 1.2 17 75-91 45-61 (105)
70 PRK14898 DNA-directed RNA poly 43.5 32 0.0007 29.0 3.5 24 65-90 172-195 (858)
71 cd00565 ThiS ThiaminS ubiquiti 43.2 58 0.0013 17.9 4.2 32 59-92 26-60 (65)
72 PF07591 PT-HINT: Pretoxin HIN 42.7 14 0.0003 23.7 1.1 16 75-90 70-85 (130)
73 COG2501 S4-like RNA binding pr 42.4 37 0.0008 20.1 2.8 25 65-91 38-62 (73)
74 PF11286 DUF3087: Protein of u 42.3 39 0.00084 23.1 3.2 35 12-46 38-72 (165)
75 PRK10838 spr outer membrane li 42.1 16 0.00035 25.2 1.4 17 75-91 122-138 (190)
76 TIGR03635 S17_bact 30S ribosom 41.8 27 0.00059 20.3 2.1 15 78-92 45-59 (71)
77 PLN00051 RNA-binding S4 domain 41.8 28 0.0006 25.3 2.6 26 65-92 217-242 (267)
78 COG3031 PulC Type II secretory 40.8 40 0.00087 24.6 3.3 27 51-79 247-273 (275)
79 PF06251 Caps_synth_GfcC: Caps 39.0 41 0.00088 23.5 3.1 29 61-91 166-202 (229)
80 cd00165 S4 S4/Hsp/ tRNA synthe 39.0 41 0.0009 17.5 2.6 24 66-91 28-51 (70)
81 PRK10413 hydrogenase 2 accesso 38.7 87 0.0019 18.7 4.2 28 63-92 19-53 (82)
82 PF01957 NfeD: NfeD-like C-ter 38.4 85 0.0018 19.5 4.3 18 75-92 115-132 (144)
83 smart00363 S4 S4 RNA-binding d 38.2 38 0.00083 17.1 2.3 24 66-91 28-51 (60)
84 PRK04132 replication factor C 37.8 41 0.00088 28.5 3.3 22 68-91 141-162 (846)
85 cd04090 eEF2_II_snRNP Loc2 eEF 37.7 30 0.00066 20.6 2.0 17 75-91 64-80 (94)
86 PF12969 DUF3857: Domain of Un 36.8 42 0.0009 21.7 2.7 17 75-91 83-99 (177)
87 PF05568 ASFV_J13L: African sw 36.7 1E+02 0.0022 20.9 4.5 20 40-59 47-66 (189)
88 cd04498 hPOT1_OB2 hPOT1_OB2: A 36.2 20 0.00043 23.2 1.0 16 78-93 73-88 (123)
89 PF12857 TOBE_3: TOBE-like dom 35.9 38 0.00083 18.4 2.1 18 75-92 36-57 (58)
90 cd00754 MoaD Ubiquitin domain 35.4 84 0.0018 17.6 4.4 28 62-92 48-75 (80)
91 PF12961 DUF3850: Domain of Un 34.3 81 0.0018 18.5 3.4 13 80-92 27-39 (72)
92 PRK14715 DNA polymerase II lar 33.6 40 0.00086 30.4 2.6 26 64-91 990-1015(1627)
93 KOG3416|consensus 33.3 28 0.00061 22.8 1.4 12 80-91 60-71 (134)
94 PRK05610 rpsQ 30S ribosomal pr 33.1 45 0.00097 20.1 2.2 15 78-92 50-64 (84)
95 PRK00286 xseA exodeoxyribonucl 32.7 1E+02 0.0022 23.5 4.6 38 51-91 383-427 (438)
96 cd04092 mtEFG2_II_like mtEFG2_ 32.4 35 0.00076 19.6 1.6 17 75-91 54-70 (83)
97 PF02080 TrkA_C: TrkA-C domain 32.4 25 0.00055 19.2 1.0 24 65-91 32-57 (71)
98 PF13748 ABC_membrane_3: ABC t 32.3 1.7E+02 0.0037 21.1 5.3 45 27-71 140-184 (237)
99 PF02699 YajC: Preprotein tran 32.2 1.1E+02 0.0024 18.0 3.9 12 45-56 22-33 (82)
100 PF06341 DUF1056: Protein of u 31.6 1.1E+02 0.0023 17.6 5.4 14 3-16 15-28 (63)
101 PF02597 ThiS: ThiS family; I 30.7 81 0.0018 17.4 3.0 40 51-92 26-72 (77)
102 PRK14701 reverse gyrase; Provi 30.6 58 0.0013 29.6 3.2 24 65-90 963-986 (1638)
103 PTZ00414 10 kDa heat shock pro 30.1 50 0.0011 20.6 2.1 31 60-92 43-73 (100)
104 PF06966 DUF1295: Protein of u 29.9 2E+02 0.0043 20.2 6.3 46 22-72 116-161 (235)
105 PF11346 DUF3149: Protein of u 29.6 94 0.002 16.3 3.9 29 22-50 10-38 (42)
106 COG4920 Predicted membrane pro 29.3 1.4E+02 0.003 21.5 4.3 27 4-36 16-42 (249)
107 cd04088 EFG_mtEFG_II EFG_mtEFG 29.2 42 0.0009 19.2 1.6 17 75-91 54-70 (83)
108 PRK09681 putative type II secr 28.8 82 0.0018 23.1 3.3 28 49-78 245-272 (276)
109 COG1018 Hmp Flavodoxin reducta 28.3 41 0.00089 24.2 1.7 27 64-92 70-98 (266)
110 PF14451 Ub-Mut7C: Mut7-C ubiq 28.2 1.3E+02 0.0029 17.7 3.7 39 50-93 36-76 (81)
111 PF14981 FAM165: FAM165 family 28.2 1.1E+02 0.0023 16.6 4.6 34 25-58 11-44 (51)
112 PRK06033 hypothetical protein; 28.2 44 0.00095 19.9 1.5 17 75-91 18-37 (83)
113 KOG3955|consensus 28.0 16 0.00034 27.4 -0.5 42 2-43 234-275 (361)
114 cd03700 eEF2_snRNP_like_II EF2 28.0 61 0.0013 19.1 2.2 17 75-91 64-80 (93)
115 PF05203 Hom_end_hint: Hom_end 27.9 46 0.001 23.4 1.8 23 63-89 5-28 (215)
116 PRK11354 kil FtsZ inhibitor pr 27.7 53 0.0011 19.4 1.8 17 74-90 8-24 (73)
117 COG3739 Uncharacterized integr 27.7 2.3E+02 0.0049 20.5 5.3 40 2-45 48-90 (263)
118 cd03691 BipA_TypA_II BipA_TypA 27.2 50 0.0011 19.0 1.7 17 75-91 57-73 (86)
119 PF01052 SpoA: Surface present 27.0 42 0.0009 19.1 1.3 12 80-91 27-38 (77)
120 PRK14533 groES co-chaperonin G 26.8 73 0.0016 19.4 2.4 30 61-92 35-64 (91)
121 CHL00142 rps17 ribosomal prote 26.6 67 0.0015 19.3 2.2 15 78-92 47-61 (84)
122 COG2323 Predicted membrane pro 26.4 2.4E+02 0.0053 20.0 7.6 17 53-71 86-102 (224)
123 cd04486 YhcR_OBF_like YhcR_OBF 26.2 66 0.0014 18.7 2.1 14 79-92 42-55 (78)
124 COG5462 Predicted secreted (pe 25.9 1.8E+02 0.0039 19.2 4.2 24 34-57 12-35 (138)
125 TIGR00008 infA translation ini 25.8 55 0.0012 19.0 1.6 12 81-92 44-55 (68)
126 PRK04778 septation ring format 25.4 1.8E+02 0.004 23.2 5.0 30 28-57 6-35 (569)
127 PF02009 Rifin_STEVOR: Rifin/s 25.3 1.8E+02 0.0038 21.6 4.6 28 26-53 260-287 (299)
128 COG1585 Membrane protein impli 24.9 2.1E+02 0.0045 18.7 8.9 15 78-92 115-129 (140)
129 PF07009 DUF1312: Protein of u 24.8 98 0.0021 19.2 2.8 29 61-90 26-54 (113)
130 PF00366 Ribosomal_S17: Riboso 24.8 73 0.0016 18.3 2.0 15 78-92 40-54 (69)
131 PF11694 DUF3290: Protein of u 24.8 2.2E+02 0.0047 18.9 6.1 18 74-91 98-115 (149)
132 PRK10318 hypothetical protein; 24.4 1.5E+02 0.0032 19.2 3.6 22 51-72 27-49 (121)
133 TIGR02480 fliN flagellar motor 24.2 54 0.0012 18.9 1.4 17 75-91 19-38 (77)
134 cd03690 Tet_II Tet_II: This su 24.1 61 0.0013 18.9 1.7 17 75-91 56-72 (85)
135 PF09581 Spore_III_AF: Stage I 23.9 1E+02 0.0023 20.4 3.0 31 5-35 3-35 (188)
136 COG5038 Ca2+-dependent lipid-b 23.9 3.6E+02 0.0078 24.2 6.6 14 5-18 160-173 (1227)
137 PF02601 Exonuc_VII_L: Exonucl 23.6 1.3E+02 0.0028 21.8 3.6 17 75-91 293-309 (319)
138 cd04451 S1_IF1 S1_IF1: Transla 23.5 66 0.0014 17.7 1.7 11 81-91 40-50 (64)
139 PF13550 Phage-tail_3: Putativ 23.5 61 0.0013 20.6 1.7 12 80-91 138-149 (164)
140 PRK05585 yajC preprotein trans 23.1 2E+02 0.0043 17.9 5.6 23 46-68 39-61 (106)
141 PRK01001 putative inner membra 23.1 2E+02 0.0043 24.5 4.8 36 25-62 576-611 (795)
142 TIGR01477 RIFIN variant surfac 22.9 1.4E+02 0.0031 22.8 3.8 29 26-54 314-342 (353)
143 cd05829 Sortase_E Sortase E (S 22.9 69 0.0015 20.7 1.9 15 78-92 69-83 (144)
144 TIGR00739 yajC preprotein tran 22.7 1.8E+02 0.0039 17.3 5.2 17 54-70 33-49 (84)
145 COG4872 Predicted membrane pro 22.7 2E+02 0.0043 22.2 4.4 14 5-18 55-68 (394)
146 COG1372 Intein/homing endonucl 22.7 69 0.0015 23.0 2.0 21 69-91 88-108 (420)
147 PTZ00046 rifin; Provisional 22.6 1.4E+02 0.0031 22.8 3.7 29 26-54 319-347 (358)
148 cd03689 RF3_II RF3_II: this su 22.6 61 0.0013 19.0 1.4 17 75-91 55-71 (85)
149 CHL00084 rpl19 ribosomal prote 22.5 77 0.0017 20.3 2.0 14 78-91 19-32 (117)
150 COG4043 Preprotein translocase 22.4 69 0.0015 20.3 1.7 12 80-91 32-43 (111)
151 PRK00364 groES co-chaperonin G 22.3 1.7E+02 0.0037 17.7 3.4 31 61-92 35-69 (95)
152 COG3400 Uncharacterized protei 22.2 1.7E+02 0.0037 22.9 4.0 39 50-91 166-206 (471)
153 PRK05326 potassium/proton anti 22.0 77 0.0017 25.1 2.3 26 65-91 445-470 (562)
154 PRK00276 infA translation init 21.7 73 0.0016 18.2 1.6 10 82-91 47-56 (72)
155 cd04466 S1_YloQ_GTPase S1_YloQ 21.6 94 0.002 16.8 2.1 12 80-91 36-47 (68)
156 PRK10839 16S rRNA pseudouridyl 21.6 1.7E+02 0.0037 20.2 3.8 37 49-91 14-50 (232)
157 cd04456 S1_IF1A_like S1_IF1A_l 21.5 72 0.0016 18.8 1.6 11 82-92 39-49 (78)
158 PF09925 DUF2157: Predicted me 21.5 2.3E+02 0.005 18.1 5.2 12 5-16 42-53 (145)
159 PF10829 DUF2554: Protein of u 21.3 54 0.0012 19.4 1.0 22 4-25 8-31 (76)
160 COG0564 RluA Pseudouridylate s 21.2 1.3E+02 0.0028 21.9 3.2 25 65-92 38-62 (289)
161 PF12791 RsgI_N: Anti-sigma fa 21.1 1.5E+02 0.0032 15.7 4.3 31 60-92 4-36 (56)
162 cd06555 ASCH_PF0470_like ASC-1 20.7 85 0.0018 19.8 1.9 13 80-92 30-42 (109)
163 cd04091 mtEFG1_II_like mtEFG1_ 20.5 68 0.0015 18.3 1.4 17 75-91 53-69 (81)
164 PRK01122 potassium-transportin 20.3 2.1E+02 0.0044 23.7 4.4 34 27-60 64-98 (679)
165 KOG3403|consensus 20.2 70 0.0015 21.0 1.4 10 82-91 71-80 (145)
166 PF14851 FAM176: FAM176 family 20.2 2.8E+02 0.0061 18.6 4.9 28 18-45 19-46 (153)
167 PRK04972 putative transporter; 20.0 1.6E+02 0.0035 23.6 3.7 25 65-91 248-273 (558)
168 PRK10409 hydrogenase assembly 20.0 2.2E+02 0.0049 17.3 3.9 29 62-92 15-52 (90)
No 1
>KOG0202|consensus
Probab=99.73 E-value=4.1e-19 Score=141.45 Aligned_cols=80 Identities=35% Similarity=0.458 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV 83 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv 83 (93)
.+|+++|++||+... |+|+++|.+++++++.+|+||||+|+|++++|+++.|+.|+|+|+|+ .+.++++|+|
T Consensus 63 ~iLL~sA~ISfvl~~------~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk--~~~i~A~eLV 134 (972)
T KOG0202|consen 63 LILLLSAAISFVLAD------FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSGK--LQHILARELV 134 (972)
T ss_pred HHHHHHHHHHHHHHh------cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecCc--ccceehhccC
Confidence 589999999999988 89999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCEEEEe
Q psy6019 84 PGDIVEVS 91 (93)
Q Consensus 84 ~GDiv~v~ 91 (93)
|||+|.++
T Consensus 135 PGDiV~l~ 142 (972)
T KOG0202|consen 135 PGDIVELK 142 (972)
T ss_pred CCCEEEEe
Confidence 99999986
No 2
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.72 E-value=3.5e-17 Score=134.40 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV 83 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv 83 (93)
++|++++++|++.++ |.++++|++++++++.++++||+|+++++++|+++.+++++|+|||+ .++|+++|||
T Consensus 66 ~iL~~aails~~~~~------~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~--~~~I~a~eLV 137 (1053)
T TIGR01523 66 MVLIIAAAISFAMHD------WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGK--SDAIDSHDLV 137 (1053)
T ss_pred HHHHHHHHHHHHHhh------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCe--eeecCHhhCC
Confidence 678999999999877 99999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCEEEEee
Q psy6019 84 PGDIVEVSE 92 (93)
Q Consensus 84 ~GDiv~v~~ 92 (93)
|||+|.+++
T Consensus 138 pGDIv~L~~ 146 (1053)
T TIGR01523 138 PGDICLLKT 146 (1053)
T ss_pred CCCEEEECC
Confidence 999999874
No 3
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.64 E-value=9.9e-16 Score=122.44 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV 83 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv 83 (93)
++|++++++|++.++ |.++++|++++++++.++++||+++++++++|.++.|++++|+|||+ .+++|++|++
T Consensus 40 ~lL~~aa~~s~~~~~------~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~--~~~I~~~~Lv 111 (755)
T TIGR01647 40 WVMEAAAIIAIALEN------WVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRDGK--WQEIPASELV 111 (755)
T ss_pred HHHHHHHHHHHhhcc------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCE--EEEEEhhhCc
Confidence 578899999999887 89999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCEEEEee
Q psy6019 84 PGDIVEVSE 92 (93)
Q Consensus 84 ~GDiv~v~~ 92 (93)
|||+|.+++
T Consensus 112 ~GDiV~l~~ 120 (755)
T TIGR01647 112 PGDVVRLKI 120 (755)
T ss_pred CCCEEEECC
Confidence 999999975
No 4
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.63 E-value=1.9e-15 Score=122.47 Aligned_cols=81 Identities=26% Similarity=0.367 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV 83 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv 83 (93)
++|++++++|++.++ |.++++|++++++++.++++||+++++++++|.++.|++++|+|||+ .++|+++||+
T Consensus 65 ~~L~~aa~ls~~~g~------~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~--~~~I~~~eLv 136 (884)
T TIGR01522 65 LLLIASAVISVFMGN------IDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIREGK--LEHVLASTLV 136 (884)
T ss_pred HHHHHHHHHHHHHcc------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEEEEHHHCc
Confidence 678889999999887 88999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCEEEEee
Q psy6019 84 PGDIVEVSE 92 (93)
Q Consensus 84 ~GDiv~v~~ 92 (93)
|||+|.+++
T Consensus 137 ~GDiv~l~~ 145 (884)
T TIGR01522 137 PGDLVCLSV 145 (884)
T ss_pred cCCEEEecC
Confidence 999999875
No 5
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.62 E-value=2.6e-15 Score=122.01 Aligned_cols=88 Identities=35% Similarity=0.391 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhhcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEe
Q psy6019 3 DLSLVGCYNMSAMSTE----QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR 78 (93)
Q Consensus 3 ~~~L~~~~~~s~~~~~----~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~ 78 (93)
-++|++++++|++.+. ......|.++++|++++++++.++++||+|+++++++|.++.|.+++|+|||+ .++++
T Consensus 10 ~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRdg~--~~~I~ 87 (917)
T TIGR01116 10 VRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRDGR--WSVIK 87 (917)
T ss_pred HHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEECCE--EEEEE
Confidence 3689999999988531 11223599999999999999999999999999999999999999999999999 89999
Q ss_pred CCCCCCCCEEEEee
Q psy6019 79 AKEIVPGDIVEVSE 92 (93)
Q Consensus 79 ~~elv~GDiv~v~~ 92 (93)
++||||||+|.+++
T Consensus 88 ~~~Lv~GDiv~l~~ 101 (917)
T TIGR01116 88 AKDLVPGDIVELAV 101 (917)
T ss_pred HHHCCCCCEEEECC
Confidence 99999999999974
No 6
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.62 E-value=4.3e-15 Score=120.75 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC------CccceEEE
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG------DKSGVQKV 77 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~------g~~~~~~i 77 (93)
++|++++++|++.++ |.++++|+++++++.+++++||+|+++++++|.++.|++++|+|| |+ .++|
T Consensus 107 ~lL~~aa~ls~~~~~------~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~--~~~I 178 (902)
T PRK10517 107 ILLTILGAISYATED------LFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENG--WLEI 178 (902)
T ss_pred HHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCe--EEEE
Confidence 577888999999877 889999999999999999999999999999999999999999999 56 7999
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
+++||+|||+|.+++
T Consensus 179 ~~~eLvpGDiV~l~~ 193 (902)
T PRK10517 179 PIDQLVPGDIIKLAA 193 (902)
T ss_pred EHHhCCCCCEEEECC
Confidence 999999999999874
No 7
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.60 E-value=7.2e-15 Score=118.99 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe------CCccceEEE
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR------GDKSGVQKV 77 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir------~g~~~~~~i 77 (93)
++|++++++|++.++ |.++++|+++++++..++++||+|+++++++|.++.+++++|+| ||+ .+++
T Consensus 73 ~iL~~~a~ls~~~~~------~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~--~~~I 144 (867)
T TIGR01524 73 YILAMLMGVSYLTDD------LEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGS--MDEV 144 (867)
T ss_pred HHHHHHHHHHHHHhh------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCe--EEEE
Confidence 578899999998876 88999999999999999999999999999999999999999999 899 8999
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
+++||+|||+|.+++
T Consensus 145 ~~~eLv~GDiV~l~~ 159 (867)
T TIGR01524 145 PIDALVPGDLIELAA 159 (867)
T ss_pred EhhcCCCCCEEEECC
Confidence 999999999999974
No 8
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.58 E-value=1.4e-14 Score=117.85 Aligned_cols=87 Identities=24% Similarity=0.264 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCC------cc
Q psy6019 4 LSLVGCYNMSAMSTEQ-----RNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGD------KS 72 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~-----~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g------~~ 72 (93)
++|++++++|++.+.. +...+|.++++|+++++++.+++++||+|+++++++|+++.|++++|+||| +
T Consensus 85 ~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~- 163 (903)
T PRK15122 85 YVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPV- 163 (903)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCe-
Confidence 6889999999986321 123358999999999999999999999999999999999999999999995 5
Q ss_pred ceEEEeCCCCCCCCEEEEee
Q psy6019 73 GVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 73 ~~~~i~~~elv~GDiv~v~~ 92 (93)
.++||++||+|||+|.+++
T Consensus 164 -~~~I~~~eLv~GDiV~l~~ 182 (903)
T PRK15122 164 -RREIPMRELVPGDIVHLSA 182 (903)
T ss_pred -EEEEEHHHCCCCCEEEECC
Confidence 7999999999999999975
No 9
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.52 E-value=8.3e-14 Score=114.15 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019 4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK 76 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~ 76 (93)
++|+++++++++... .....+|.++++|++++++++.++++||+|+++++++|.++.|.+++|+|||+ .++
T Consensus 76 ~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~--~~~ 153 (997)
T TIGR01106 76 MLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGE--KMS 153 (997)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEE
Confidence 567888888776411 01124688999999999999999999999999999999999999999999999 899
Q ss_pred EeCCCCCCCCEEEEee
Q psy6019 77 VRAKEIVPGDIVEVSE 92 (93)
Q Consensus 77 i~~~elv~GDiv~v~~ 92 (93)
++++||+|||+|.+++
T Consensus 154 I~~~~lv~GDiv~l~~ 169 (997)
T TIGR01106 154 INAEQVVVGDLVEVKG 169 (997)
T ss_pred eeHHHCCCCCEEEECC
Confidence 9999999999999974
No 10
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.6e-14 Score=115.54 Aligned_cols=81 Identities=33% Similarity=0.399 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhhcchhhhhhH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMML----ASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRA 79 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~----~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~ 79 (93)
++|+.++++|++.+. | .++.+|+.++++|+.+|++||+|+++++++|+++.+.+++|+|||+ .+++++
T Consensus 84 ~iL~~~a~~s~~~~~------~~~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~--~~~i~a 155 (917)
T COG0474 84 ILLLVAALLSAFVGD------WVDAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGK--FVEIPA 155 (917)
T ss_pred HHHHHHHHHHHHhhc------ccccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCc--EEEecH
Confidence 578889999998877 5 6778999999999999999999999999999999999999999999 899999
Q ss_pred CCCCCCCEEEEee
Q psy6019 80 KEIVPGDIVEVSE 92 (93)
Q Consensus 80 ~elv~GDiv~v~~ 92 (93)
+||||||+|.+++
T Consensus 156 ~eLVpGDiV~l~~ 168 (917)
T COG0474 156 SELVPGDIVLLEA 168 (917)
T ss_pred HHCCCCcEEEECC
Confidence 9999999999874
No 11
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.48 E-value=2.7e-13 Score=110.55 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccC-CCeeEEEeCCccceE
Q psy6019 4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYE-PEMGKVIRGDKSGVQ 75 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~-~~~a~Vir~g~~~~~ 75 (93)
++|++++++|++.+. .....+|.++++|+++++++.++++++|+++++++++|.+.. +.+++|+|||+ .+
T Consensus 100 ~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~--~~ 177 (941)
T TIGR01517 100 ILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQ--EQ 177 (941)
T ss_pred HHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCE--EE
Confidence 578889999988541 112346999999999999999999999999999999998754 66999999999 89
Q ss_pred EEeCCCCCCCCEEEEee
Q psy6019 76 KVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 76 ~i~~~elv~GDiv~v~~ 92 (93)
+++++||+|||+|.+++
T Consensus 178 ~I~~~~Lv~GDiV~l~~ 194 (941)
T TIGR01517 178 QISIHDIVVGDIVSLST 194 (941)
T ss_pred EEeHHHCCCCCEEEECC
Confidence 99999999999999874
No 12
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.46 E-value=4.8e-13 Score=103.53 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=76.7
Q ss_pred chhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCC
Q psy6019 2 ADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81 (93)
Q Consensus 2 ~~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~e 81 (93)
.|.++..++.++++.++ |.++.+|+++++++..++.++|+|+.+.+++|.++.|++++|+|||+ .+++++++
T Consensus 1 ~~~l~~~a~~~~~~~~~------~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~--~~~i~~~~ 72 (536)
T TIGR01512 1 VDLLMALAALGAVAIGE------YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGS--LEEVAVEE 72 (536)
T ss_pred CcHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCE--EEEEEHHH
Confidence 37888888888888776 78889999999999999999999999999999999999999999999 89999999
Q ss_pred CCCCCEEEEee
Q psy6019 82 IVPGDIVEVSE 92 (93)
Q Consensus 82 lv~GDiv~v~~ 92 (93)
++|||++.+++
T Consensus 73 l~~GDiv~v~~ 83 (536)
T TIGR01512 73 LKVGDVVVVKP 83 (536)
T ss_pred CCCCCEEEEcC
Confidence 99999999874
No 13
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.38 E-value=3e-12 Score=101.67 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhhcchhh-----hhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhccCCC-eeE-EEeCCcc
Q psy6019 4 LSLVGCYNMSAMSTEQRN-----RMMLASAKRNLASMAYFALTEYQK----ERNAESAIEALKEYEPE-MGK-VIRGDKS 72 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~-----~~~~~~~~~I~~~v~l~~~i~~~~----e~~a~~~~~~L~~l~~~-~a~-Vir~g~~ 72 (93)
++|.+++++|++.+...+ .....+++.|+++++++.++++|+ |+|+++++++|+++.|+ +++ +.|||+
T Consensus 36 ~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~- 114 (673)
T PRK14010 36 FVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGS- 114 (673)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCE-
Confidence 578889999987544211 001245888888999999999999 67899999999999987 786 679999
Q ss_pred ceEEEeCCCCCCCCEEEEee
Q psy6019 73 GVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 73 ~~~~i~~~elv~GDiv~v~~ 92 (93)
.+++|++|++|||+|.+++
T Consensus 115 -~~~I~a~eLv~GDiV~v~~ 133 (673)
T PRK14010 115 -YEMIDASDLKKGHIVRVAT 133 (673)
T ss_pred -EEEEEHHHcCCCCEEEECC
Confidence 8999999999999999975
No 14
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.38 E-value=3.9e-12 Score=98.75 Aligned_cols=82 Identities=23% Similarity=0.215 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCC-ccceEEEeCCC
Q psy6019 3 DLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGD-KSGVQKVRAKE 81 (93)
Q Consensus 3 ~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g-~~~~~~i~~~e 81 (93)
|+++..+..++++.+. |.++.+|+++++++..++.++++|+++.+++|.++.|++++++||| + .++++.++
T Consensus 2 d~l~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~--~~~i~~~~ 73 (556)
T TIGR01525 2 DLLMALATIAAYAMGL------VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGS--EEEVPVEE 73 (556)
T ss_pred cHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCe--EEEEEHHH
Confidence 6777777788887766 7899999999999999999999999999999999999999999996 8 79999999
Q ss_pred CCCCCEEEEee
Q psy6019 82 IVPGDIVEVSE 92 (93)
Q Consensus 82 lv~GDiv~v~~ 92 (93)
++|||+|.+++
T Consensus 74 l~~GDiv~v~~ 84 (556)
T TIGR01525 74 LQVGDIVIVRP 84 (556)
T ss_pred CCCCCEEEECC
Confidence 99999999975
No 15
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.35 E-value=6.6e-12 Score=100.53 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019 3 DLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI 82 (93)
Q Consensus 3 ~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el 82 (93)
|.+...++..+++.+. |.++++++++++++..++.+++.|+++.+++|.++.|++++++|||+ ++++|++++
T Consensus 190 ~~L~~~a~~~a~~~~~------~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~--~~~v~~~~l 261 (741)
T PRK11033 190 ETLMSVAAIGALFIGA------TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGE--REEVAIADL 261 (741)
T ss_pred cHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCE--EEEEEHHHC
Confidence 5555566666666655 78899999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCEEEEee
Q psy6019 83 VPGDIVEVSE 92 (93)
Q Consensus 83 v~GDiv~v~~ 92 (93)
+|||+|.+++
T Consensus 262 ~~GDiv~v~~ 271 (741)
T PRK11033 262 RPGDVIEVAA 271 (741)
T ss_pred CCCCEEEECC
Confidence 9999999875
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.29 E-value=3.4e-11 Score=99.39 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV 83 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv 83 (93)
+++++|.++. +..+ +|.++++|+++++++..++.++++|+.++++++.. .|..++|+|||+ +++++++||+
T Consensus 178 i~~i~~~~l~-~~~~-----~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rdg~--~~~I~s~eLv 248 (1054)
T TIGR01657 178 VFQVFSVILW-LLDE-----YYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRNGK--WVTIASDELV 248 (1054)
T ss_pred HHHHHHHHHH-Hhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEECCE--EEEEEcccCC
Confidence 3455554444 4444 48899999999999999999999999998888765 467899999999 8999999999
Q ss_pred CCCEEEEe
Q psy6019 84 PGDIVEVS 91 (93)
Q Consensus 84 ~GDiv~v~ 91 (93)
|||+|.++
T Consensus 249 pGDiv~l~ 256 (1054)
T TIGR01657 249 PGDIVSIP 256 (1054)
T ss_pred CCCEEEEe
Confidence 99999997
No 17
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.29 E-value=3e-11 Score=96.11 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhcc-----h---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeCCccce
Q psy6019 4 LSLVGCYNMSAMSTE-----Q---RNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRGDKSGV 74 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~-----~---~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~g~~~~ 74 (93)
++|++++++|++.+- + ....+|..++.+++.++++.+++.++|+|+++++++|+++.|+ +++++|||+. .
T Consensus 37 ~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~-~ 115 (679)
T PRK01122 37 FVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLREPGA-A 115 (679)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCE-E
Confidence 578888999987431 0 1235566777777888888888889999999999999999987 7999998751 4
Q ss_pred EEEeCCCCCCCCEEEEee
Q psy6019 75 QKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~~ 92 (93)
+++|++|+++||+|.+++
T Consensus 116 ~~V~~~eL~~GDiV~v~~ 133 (679)
T PRK01122 116 EEVPATELRKGDIVLVEA 133 (679)
T ss_pred EEEEHHHcCCCCEEEEcC
Confidence 889999999999999975
No 18
>KOG0205|consensus
Probab=99.28 E-value=1.8e-12 Score=102.35 Aligned_cols=87 Identities=20% Similarity=0.123 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhh-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019 4 LSLVGCYNMSAMS-TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI 82 (93)
Q Consensus 4 ~~L~~~~~~s~~~-~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el 82 (93)
++.-.+|++.+.. ++.+.+-+|.+.++|.++.++|+.++|.+|+.|.++.++|++-..++++|+|||+ ..+++++++
T Consensus 75 wVMEaAAimA~~Lang~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRDGk--w~E~eAs~l 152 (942)
T KOG0205|consen 75 WVMEAAAIMAIGLANGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGK--WSEQEASIL 152 (942)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEeecCe--eeeeecccc
Confidence 4566677777653 3445667899999999999999999999999999999999988888999999999 799999999
Q ss_pred CCCCEEEEee
Q psy6019 83 VPGDIVEVSE 92 (93)
Q Consensus 83 v~GDiv~v~~ 92 (93)
||||++.++.
T Consensus 153 VPGDIlsik~ 162 (942)
T KOG0205|consen 153 VPGDILSIKL 162 (942)
T ss_pred ccCceeeecc
Confidence 9999999863
No 19
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.22 E-value=1e-10 Score=93.04 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhhcc----h---hhhhhHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEe-CCc
Q psy6019 4 LSLVGCYNMSAMSTE----Q---RNRMMLAS---AKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIR-GDK 71 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~----~---~~~~~~~~---~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir-~g~ 71 (93)
++|++++++|++..- . ++...|.+ ++.+++.++++.+++.++|+|+++++++|+++.|+ .++++| ||+
T Consensus 36 ~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~ 115 (675)
T TIGR01497 36 FIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGA 115 (675)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCE
Confidence 578888899977411 1 11123444 35556667778888889999999999999999988 588886 888
Q ss_pred cceEEEeCCCCCCCCEEEEee
Q psy6019 72 SGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 72 ~~~~~i~~~elv~GDiv~v~~ 92 (93)
.+++|+++++|||+|.+++
T Consensus 116 --~~~V~~~~L~~GDiV~V~~ 134 (675)
T TIGR01497 116 --IDKVPADQLKKGDIVLVEA 134 (675)
T ss_pred --EEEEEHHHCCCCCEEEECC
Confidence 8999999999999999875
No 20
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.22 E-value=7.4e-11 Score=81.66 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCe-eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 30 RNLASMAYFALTEYQKERNAESAIEALKEYEPEM-GKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 30 ~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~-a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+|+++++++..++.++++|+++.+++|+++.+++ ++|.|||+ .++++.+|++|||++.+++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~--~~~i~~~~L~~GDiI~l~~ 62 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGR--WQKIPSSELVPGDIIILKA 62 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTE--EEEEEGGGT-TTSEEEEET
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccc--cccchHhhccceeeeeccc
Confidence 4677888999999999999999999999998887 99999999 8999999999999999974
No 21
>KOG0204|consensus
Probab=99.15 E-value=9.1e-12 Score=100.24 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhh--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeCCccceEEEeCC
Q psy6019 4 LSLVGCYNMSAMS--TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRGDKSGVQKVRAK 80 (93)
Q Consensus 4 ~~L~~~~~~s~~~--~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~g~~~~~~i~~~ 80 (93)
++|.+||++|+.. ..++.+.+|++++.|++.+++..+++...+|+.++++++|++...+ +..|+|||+ .++++.-
T Consensus 159 iIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~--r~~isI~ 236 (1034)
T KOG0204|consen 159 IILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGR--RQQISIY 236 (1034)
T ss_pred HHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEECCE--EEEEEEe
Confidence 5788999999874 3444566899999999999999999999999999999999987666 789999999 8999999
Q ss_pred CCCCCCEEEEe
Q psy6019 81 EIVPGDIVEVS 91 (93)
Q Consensus 81 elv~GDiv~v~ 91 (93)
|+++||++.++
T Consensus 237 diVVGDIv~lk 247 (1034)
T KOG0204|consen 237 DLVVGDIVQLK 247 (1034)
T ss_pred eeeeccEEEee
Confidence 99999999986
No 22
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.13 E-value=4.8e-10 Score=90.70 Aligned_cols=69 Identities=13% Similarity=0.293 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+.||+++..++++++++-.++.+.+.|+.+++++|.++.|++++++|+|+ ++++|+++++|||+|.+++
T Consensus 283 ~~~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~--~~~v~~~~l~~GD~v~v~~ 351 (834)
T PRK10671 283 HLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEG--EKSVPLADVQPGMLLRLTT 351 (834)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCc--EEEEEHHHcCCCCEEEEcC
Confidence 55788899999999988888888888999999999999999999999999 8999999999999999975
No 23
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.10 E-value=9.3e-10 Score=85.88 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC-CccceEEEeCCCCCCCCEEEEee
Q psy6019 22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG-DKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~-g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+.+|.++.+++.+++++-.++.+.++|+++++++|.++.|++++++|+ |+ .+++|+++++|||+|.+++
T Consensus 51 ~~~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~--~~~v~~~~l~~GDii~v~~ 120 (562)
T TIGR01511 51 HTFFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGS--IEEVPVALLQPGDIVKVLP 120 (562)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCe--EEEEEHHHCCCCCEEEECC
Confidence 456778888888888888888888889999999999999999999986 55 6899999999999999975
No 24
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.99 E-value=4.5e-09 Score=84.23 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe-CCccceEEEeCCCCCCCCEEEEee
Q psy6019 23 MMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 23 ~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir-~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.||+++.+|+.+++++-.++.+...|+++++++|.++.|++|++++ ||+ .+++|++|+++||++.++|
T Consensus 172 ~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~--~~~v~v~~v~~GD~v~Vrp 240 (713)
T COG2217 172 VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGE--EEEVPVEEVQVGDIVLVRP 240 (713)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCc--EEEEEHHHCCCCCEEEECC
Confidence 7789999999999988888888888999999999999999998887 566 7999999999999999986
No 25
>KOG0203|consensus
Probab=98.73 E-value=6.4e-10 Score=89.75 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhh-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019 4 LSLVGCYNMSAMS-------TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK 76 (93)
Q Consensus 4 ~~L~~~~~~s~~~-------~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~ 76 (93)
+++.++++++++. .+...+.+++.++++..++++..+.++|||.++.+-+++..+|.|..|+|+|||. ...
T Consensus 98 ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~--k~~ 175 (1019)
T KOG0203|consen 98 ILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDGE--KMT 175 (1019)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeecce--eEE
Confidence 5677888888762 1223355677788888888889999999999999999999999999999999999 999
Q ss_pred EeCCCCCCCCEEEEe
Q psy6019 77 VRAKEIVPGDIVEVS 91 (93)
Q Consensus 77 i~~~elv~GDiv~v~ 91 (93)
+.++|+|+||++.++
T Consensus 176 i~~eelVvGD~v~vk 190 (1019)
T KOG0203|consen 176 INAEELVVGDLVEVK 190 (1019)
T ss_pred echhhcccccceeec
Confidence 999999999999886
No 26
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=98.56 E-value=8.8e-08 Score=73.53 Aligned_cols=58 Identities=41% Similarity=0.607 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhc--cCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 32 LASMAYFALTEYQKERNAESAIEALKE--YEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 32 ~~~v~l~~~i~~~~e~~a~~~~~~L~~--l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+.+++++.+++.+++++++++.++|.+ +.|++++++|+| + +++|+++++|||+|.+++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~--~~V~~~~l~~GDiv~v~~ 62 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-W--KEIPASDLVPGDIVLVKS 62 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-e--EEEEHHHCCCCCEEEECC
Confidence 346778889999999999999999998 889999999988 3 889999999999999874
No 27
>KOG0208|consensus
Probab=98.37 E-value=2.2e-06 Score=70.62 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 25 LASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 25 ~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
++-|..|+++.+.+...+.|++.+.++.++++-+. +-.++|+|||. .++|.++|+||||++.+.+
T Consensus 214 ~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~g~--~~ti~S~eLVPGDil~i~~ 278 (1140)
T KOG0208|consen 214 YYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRDGF--WETVDSSELVPGDILYIPP 278 (1140)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEECCE--EEEEeccccccccEEEECC
Confidence 34566667777888889999999999888877654 45789999999 8999999999999999864
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.26 E-value=6.6e-06 Score=68.46 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHhhc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC-CccceEEEeC
Q psy6019 2 ADLSLVGCYNMSAMST-EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG-DKSGVQKVRA 79 (93)
Q Consensus 2 ~~~~L~~~~~~s~~~~-~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~-g~~~~~~i~~ 79 (93)
+.+.+++.+++.++.. ...+ .+...+-++++++++.+.+.+++++..++-++. .++.++|+|+ |+ .++++.
T Consensus 29 ~N~yfl~i~ilq~ip~~s~~~--~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~---n~~~~~v~~~~~~--~~~i~~ 101 (1057)
T TIGR01652 29 ANLYFLVVALLQQVPILSPTY--RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV---NNRLTEVLEGHGQ--FVEIPW 101 (1057)
T ss_pred hhHHHHHHHHHHcCCCcCCCC--ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH---hCcEEEEECCCCc--EEEeee
Confidence 3466777888887732 1111 122333444455578888999999888776544 4678999997 78 799999
Q ss_pred CCCCCCCEEEEee
Q psy6019 80 KEIVPGDIVEVSE 92 (93)
Q Consensus 80 ~elv~GDiv~v~~ 92 (93)
++++|||+|.+++
T Consensus 102 ~~l~~GDiv~l~~ 114 (1057)
T TIGR01652 102 KDLRVGDIVKVKK 114 (1057)
T ss_pred ecccCCCEEEEcC
Confidence 9999999999974
No 29
>KOG0207|consensus
Probab=98.18 E-value=5.6e-06 Score=67.73 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 21 NRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 21 ~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.+.+|+++.+++.++.+.-+++.....|+..++++|.++.|.+|.++.+|+. +++||.+.+.+||++.+.|
T Consensus 337 ~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~-e~eI~v~lvq~gdivkV~p 407 (951)
T KOG0207|consen 337 PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSE-EKEIPVDLVQVGDIVKVKP 407 (951)
T ss_pred cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCc-ceEeeeeeeccCCEEEECC
Confidence 6778888888888887555555444556678999999999999999999854 7999999999999999875
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.52 E-value=0.00079 Score=57.12 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 26 ASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 26 ~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
...+-++++++++++-+.+++++..++=++. .++.++++|+|+ .++++.++|+|||+|.+++
T Consensus 138 t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~---N~~~~~v~~~~~--~~~i~~~~i~vGDiv~v~~ 199 (1178)
T PLN03190 138 ASILPLAFVLLVTAVKDAYEDWRRHRSDRIE---NNRLAWVLVDDQ--FQEKKWKDIRVGEIIKIQA 199 (1178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---cCcEEEEEECCe--EEEEeHHHCCCCCEEEECC
Confidence 3444555566666667777777666554433 467899999999 8999999999999999864
No 31
>KOG0209|consensus
Probab=97.21 E-value=0.002 Score=53.24 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
||+-+.+-+.+++.+-..-.+|+.|+-+.+++... .|-+..|.|+++ ++.+..+|+.|||+|.+.
T Consensus 216 yWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~-kpy~I~v~R~kK--W~~l~seeLlPgDvVSI~ 280 (1160)
T KOG0209|consen 216 YWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGN-KPYTINVYRNKK--WVKLMSEELLPGDVVSIG 280 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEEecCc--ceeccccccCCCceEEec
Confidence 68888888777776655566777777666655432 355889999999 699999999999999874
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0027 Score=50.18 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeC-CccceEEEeCCCCCCCCEEEEee
Q psy6019 28 AKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRG-DKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 28 ~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~-g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.+.+.+.+++..+-+.+.|-|.+.+-++|++...+ .++.+++ |+ .+.+++.+++.||+|.+.+
T Consensus 69 ~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~--~~~v~st~Lk~gdiV~V~a 133 (681)
T COG2216 69 TIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGS--IEMVPATELKKGDIVLVEA 133 (681)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCCCC--eeeccccccccCCEEEEec
Confidence 34444555666666667777877788888877655 6888876 78 8999999999999999864
No 33
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=87.01 E-value=0.7 Score=28.99 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
-+.-+|.-||+ ..-|+.++++||++.++
T Consensus 31 ~~~GrV~vNG~---~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 31 IEGGRVKVNGQ---RAKPSKEVKVGDILTIR 58 (100)
T ss_pred HHCCeEEECCE---EcccccccCCCCEEEEE
Confidence 34466777888 44799999999999885
No 34
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=78.92 E-value=3.4 Score=24.22 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=15.9
Q ss_pred eEEEeCCCCCCCCEEEEe
Q psy6019 74 VQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 74 ~~~i~~~elv~GDiv~v~ 91 (93)
..++++++|.+||.+.+.
T Consensus 82 ~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 82 LVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEEEHHHCCCCCEEEec
Confidence 579999999999999864
No 35
>KOG4383|consensus
Probab=78.55 E-value=3.5 Score=34.56 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHhccC------------CCe-----------eEEEeCCc
Q psy6019 23 MMLASAKRNLASMAYFALTEYQKERNA--------ESAIEALKEYE------------PEM-----------GKVIRGDK 71 (93)
Q Consensus 23 ~~~~~~~~I~~~v~l~~~i~~~~e~~a--------~~~~~~L~~l~------------~~~-----------a~Vir~g~ 71 (93)
.++..+-....+.+++..+..||++-. ++++++++++. |+. ....|||+
T Consensus 86 igl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGh 165 (1354)
T KOG4383|consen 86 IGLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGH 165 (1354)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCe
Confidence 566777777788888888998987621 22333333211 111 12368999
Q ss_pred cceEEEeCCCCCCCCEEEEee
Q psy6019 72 SGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 72 ~~~~~i~~~elv~GDiv~v~~ 92 (93)
..++|..=+|.||+|-+++
T Consensus 166 --lm~lP~~LLVeGDiIa~RP 184 (1354)
T KOG4383|consen 166 --LMELPRILLVEGDIIAFRP 184 (1354)
T ss_pred --eeecceeEEEeccEEEecC
Confidence 8999999999999999875
No 36
>KOG0206|consensus
Probab=77.65 E-value=2.3 Score=36.73 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhhcchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCC
Q psy6019 3 DLSLVGCYNMSAMSTEQRNRMMLASA-KRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81 (93)
Q Consensus 3 ~~~L~~~~~~s~~~~~~~~~~~~~~~-~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~e 81 (93)
.+-.++.++++++.-. +++.+.+ +=++.++...++=..++++|-.++=.+. ...+++|.|++.. ..+..-++
T Consensus 61 N~yFl~~~il~~ip~~---~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~i---N~~~~~v~~~~~~-~~~~~wk~ 133 (1151)
T KOG0206|consen 61 NLYFLFIAILQFIPLS---PFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEV---NNRKVEVLRGDGC-FVEKKWKD 133 (1151)
T ss_pred HHHHHHHHHHHcCccc---ccCccceeeceeeeehHHHHHHHHhhhhhhhccHHh---hcceeEEecCCce-eeeeccce
Confidence 4445666777766311 2223333 3333444445555666666554442222 3456888886552 46666777
Q ss_pred CCCCCEEEEe
Q psy6019 82 IVPGDIVEVS 91 (93)
Q Consensus 82 lv~GDiv~v~ 91 (93)
+.+||+|.+.
T Consensus 134 ~~vGd~v~v~ 143 (1151)
T KOG0206|consen 134 VRVGDIVRVE 143 (1151)
T ss_pred eeeeeEEEec
Confidence 7777777664
No 37
>PRK11507 ribosome-associated protein; Provisional
Probab=77.11 E-value=3.9 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=20.7
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.|..||+ .+.---..+.|||+|.+.
T Consensus 38 ~V~VNGe--ve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 38 QVKVDGA--VETRKRCKIVAGQTVSFA 62 (70)
T ss_pred ceEECCE--EecccCCCCCCCCEEEEC
Confidence 4667888 777788899999999874
No 38
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=74.00 E-value=4.6 Score=30.65 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.3
Q ss_pred CeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.++++.+.++ ..+++.+|+|||.|.+.
T Consensus 309 etIRlv~p~G---~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 309 ETIRLVGPDG---EPVSVTELKPGDEVLVY 335 (354)
T ss_pred cEEEEECCCC---CEeeeeecCCCCEEEEE
Confidence 4666666555 67899999999999875
No 39
>PRK06437 hypothetical protein; Provisional
Probab=73.05 E-value=9.1 Score=21.78 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=24.3
Q ss_pred ccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 58 EYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 58 ~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.+.++.+-+.+||+ ... +...+..||.|.+-+
T Consensus 31 gi~~~~vaV~vNg~--iv~-~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 31 GLDEEEYVVIVNGS--PVL-EDHNVKKEDDVLILE 62 (67)
T ss_pred CCCCccEEEEECCE--ECC-CceEcCCCCEEEEEe
Confidence 35677888889998 555 666788999998743
No 40
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=72.52 E-value=12 Score=21.56 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=20.4
Q ss_pred CCeeEEEeCCccceEEEeCC---CCCCCCEEEEe
Q psy6019 61 PEMGKVIRGDKSGVQKVRAK---EIVPGDIVEVS 91 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~~~---elv~GDiv~v~ 91 (93)
...|.+-.+|. .++++.. ++.|||.+.+.
T Consensus 16 ~~~A~v~~~G~--~~~V~~~lv~~v~~Gd~VLVH 47 (68)
T PF01455_consen 16 GGMAVVDFGGV--RREVSLALVPDVKVGDYVLVH 47 (68)
T ss_dssp TTEEEEEETTE--EEEEEGTTCTSB-TT-EEEEE
T ss_pred CCEEEEEcCCc--EEEEEEEEeCCCCCCCEEEEe
Confidence 44777878887 7777544 68899999886
No 41
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=72.27 E-value=5.3 Score=30.24 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred CeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.+.++.+.++ ..+++.+|+|||.|.+.
T Consensus 299 etIrlv~~dG---~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 299 ETIRLVTPDG---KPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cEEEEECCCC---CEeeeeecCCCCEEEEE
Confidence 3556665554 57899999999999875
No 42
>PRK11479 hypothetical protein; Provisional
Probab=69.37 E-value=1.6 Score=31.93 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=15.0
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
..|+.++++|||++..+
T Consensus 58 ~~Vs~~~LqpGDLVFfs 74 (274)
T PRK11479 58 KEITAPDLKPGDLLFSS 74 (274)
T ss_pred cccChhhCCCCCEEEEe
Confidence 57899999999999875
No 43
>KOG0210|consensus
Probab=69.06 E-value=20 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+|.--+.++.+-+.--.+.-+++++-.+..+ + .+..+.-|+|. .. .|++++++||+|.+.
T Consensus 131 y~~pl~fvl~itl~keavdd~~r~~rd~~~N---s--e~y~~ltr~~~--~~-~~Ss~i~vGDvi~v~ 190 (1051)
T KOG0210|consen 131 YWGPLGFVLTITLIKEAVDDLKRRRRDRELN---S--EKYTKLTRDGT--RR-EPSSDIKVGDVIIVH 190 (1051)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---h--hhheeeccCCc--cc-ccccccccccEEEEe
Confidence 4444444444444333444444444333221 1 12334447887 33 399999999999885
No 44
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=66.13 E-value=4 Score=26.26 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.2
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
..++.++++|||+|..+
T Consensus 70 ~~v~~~~~qpGDlvff~ 86 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFR 86 (134)
T ss_pred cccchhcCCCCCEEEEe
Confidence 56777899999999875
No 45
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=65.86 E-value=11 Score=24.29 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+.+.++.|.+. |-+.--+|+++ ---.+..+.|||.|.+.+
T Consensus 10 s~~vie~l~~~-~~rTieiRsa~---N~~tv~rl~~GDlVFlT~ 49 (122)
T COG1935 10 SRRVIESLLRN-PIRTIEIRSAR---NLLTVLRLHEGDLVFLTS 49 (122)
T ss_pred hHHHHHHHHhC-CceEEEEEccc---chHHhhcCCCCCEEEEeh
Confidence 46778888654 44555567665 333456789999999864
No 46
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=63.68 E-value=9.1 Score=20.94 Aligned_cols=23 Identities=30% Similarity=0.744 Sum_probs=18.1
Q ss_pred EEeCCccceEEEeCCCCCCCCEEEE
Q psy6019 66 VIRGDKSGVQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 66 Vir~g~~~~~~i~~~elv~GDiv~v 90 (93)
|.-||+ ...-+...+.+||.|.+
T Consensus 36 V~VNg~--~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGE--LENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCE--EccCCCCCCCCCCEEEe
Confidence 445888 66677889999999976
No 47
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=61.44 E-value=25 Score=22.64 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=26.6
Q ss_pred HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+.+.++.|.+-.+.+-. +|+.. =-+...++.|||.|.+..
T Consensus 10 s~~vi~eL~~~~~RTiE-irSa~---N~~~~~~~~~Gd~VFlT~ 49 (119)
T PF04322_consen 10 SRRVIDELKKNHIRTIE-IRSAH---NVIALESLDPGDRVFLTS 49 (119)
T ss_pred CHHHHHHHHhCCceEEE-EEcch---heeeeecCCCCCEEEEec
Confidence 45778888776555554 45544 345567889999998864
No 48
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=58.70 E-value=5.5 Score=22.96 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=12.2
Q ss_pred EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 66 VIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 66 Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
|..||. .+.-.-..+.|||+|.+.
T Consensus 35 V~VNGe--~e~rrg~Kl~~GD~V~~~ 58 (65)
T PF13275_consen 35 VKVNGE--VETRRGKKLRPGDVVEID 58 (65)
T ss_dssp HEETTB------SS----SSEEEEET
T ss_pred eEECCE--EccccCCcCCCCCEEEEC
Confidence 456777 677777799999999873
No 49
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=58.65 E-value=8.8 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
|..++|...++ ..++.+||.+||.|...
T Consensus 14 pg~a~V~~~~G---~~k~m~~L~iGD~Vla~ 41 (217)
T PF01079_consen 14 PGDATVTLEDG---GRKRMSDLKIGDRVLAV 41 (217)
T ss_dssp -TT-EEEBTTS----EEEGGG--TT-EEEEE
T ss_pred CCCCEEEeCCC---CEeEHHHCCCCCEEEEe
Confidence 55667776444 45678999999998753
No 50
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=58.54 E-value=12 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.1
Q ss_pred eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 64 GKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 64 a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
-+|.-||+ ....|...+.+||+|.+..
T Consensus 115 G~V~VNgk--~v~~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 115 GHILVNGK--KVDIPSYQVRPGDIISIKE 141 (200)
T ss_pred CCEEECCE--EeCCCCCCCCCCCEEEEee
Confidence 34556888 7889999999999999864
No 51
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=55.31 E-value=14 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=22.1
Q ss_pred eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 64 GKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 64 a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
-+|.-||+ ....|...+.+||+|.+..
T Consensus 114 G~V~VNGk--~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 114 GHILVNGR--IVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred CcEEECCE--EecCccccCCCCCEEEEcc
Confidence 34556888 8889999999999998853
No 52
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=55.09 E-value=12 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.6
Q ss_pred eeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 63 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 63 ~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+-++.-||+ .+.+|+--+.|||.+.|+.
T Consensus 118 HGHI~VnGk--~V~iPSy~V~~gdei~V~~ 145 (205)
T COG0522 118 HGHILVNGK--RVNIPSYLVSPGDEISVRE 145 (205)
T ss_pred cceEEECCE--EeccCcEEecCCCEEEeee
Confidence 456778999 9999999999999999864
No 53
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=54.65 E-value=22 Score=21.91 Aligned_cols=17 Identities=41% Similarity=0.560 Sum_probs=15.2
Q ss_pred eEEEeCCCCCCCCEEEE
Q psy6019 74 VQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 74 ~~~i~~~elv~GDiv~v 90 (93)
...+++++|.+||.+..
T Consensus 82 ~~~~~a~~l~~gd~l~~ 98 (136)
T cd00081 82 LKWVFASDLKPGDYVLV 98 (136)
T ss_pred EEEEEHHHCCCCCEEEE
Confidence 57899999999999976
No 54
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.78 E-value=26 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCeeEEEeC---CccceEEEeCC-CCCCCCEEEEee
Q psy6019 61 PEMGKVIRG---DKSGVQKVRAK-EIVPGDIVEVSE 92 (93)
Q Consensus 61 ~~~a~Vir~---g~~~~~~i~~~-elv~GDiv~v~~ 92 (93)
+..+.++|. |+.....+... .+.|||+|.+.+
T Consensus 201 ~~~v~i~R~~~~g~~~~~~~~~~~~l~~gDii~V~~ 236 (239)
T TIGR03028 201 ERGIRVMRRDDKGAVEEVSGELGDLVQPDDVIYVRE 236 (239)
T ss_pred cceEEEEEECCCCcEEEEecCCCcccCCCCEEEEeC
Confidence 445777773 43101223333 489999999864
No 55
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=53.04 E-value=36 Score=18.44 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6019 5 SLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKER 47 (93)
Q Consensus 5 ~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~ 47 (93)
.|+..+++.++..+.++....--+..+-..+.+...+++.++.
T Consensus 5 ~Li~iglv~l~~r~~~~~i~~lP~~~~Gi~Lii~g~v~r~~~r 47 (49)
T PF11384_consen 5 FLILIGLVALFSRNGSDRIQALPAILIGIGLIISGGVGRRRRR 47 (49)
T ss_pred HHHHHHHHHHHhcCCccchhccHHHHHhHHHHhhhhhhhhhhc
Confidence 3444455666644444444444455555556666666655543
No 56
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=52.84 E-value=16 Score=25.31 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+|.-||+ ....|...+.+||+|.++.
T Consensus 119 ~V~VNgk--~v~~ps~~v~~GD~I~v~~ 144 (203)
T PRK05327 119 HILVNGK--KVNIPSYRVKPGDVIEVRE 144 (203)
T ss_pred cEEECCE--EECCCCcCCCCCCEEEECC
Confidence 5667898 7888999999999998863
No 57
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=51.64 E-value=20 Score=26.97 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=19.3
Q ss_pred CeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
++.++.+..+ ..+++.++.|||.+++.
T Consensus 331 ETIkLv~~dG---~pvSV~eLk~GD~vlv~ 357 (376)
T COG1465 331 ETIKLVNPDG---EPVSVAELKPGDEVLVY 357 (376)
T ss_pred eeEEEEcCCC---cEeeeEecCCCCEEEEE
Confidence 3555555433 56788999999999874
No 58
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=49.52 E-value=33 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.1
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+|.-||+ ...-|...+.+||+|.++.
T Consensus 209 ~V~VNg~--~v~~~s~~v~~gD~IsvrG 234 (257)
T TIGR03069 209 RLRLNWK--TVTQPSRELKVGDRLQLRG 234 (257)
T ss_pred eEEECCE--EcCCCCCcCCCCCEEEEcC
Confidence 4556888 7778889999999999863
No 59
>PF13403 Hint_2: Hint domain
Probab=48.56 E-value=12 Score=24.58 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.3
Q ss_pred EEeCCCCCCCCEEEE
Q psy6019 76 KVRAKEIVPGDIVEV 90 (93)
Q Consensus 76 ~i~~~elv~GDiv~v 90 (93)
.+++++|.+||.|.=
T Consensus 15 ~~~Ve~L~~GD~V~T 29 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLT 29 (147)
T ss_pred CeEeeccCCCCEEEe
Confidence 367889999999863
No 60
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=48.55 E-value=46 Score=18.33 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=21.5
Q ss_pred cCCCeeEEEeCCccceEE---EeCCCCCCCCEEEEe
Q psy6019 59 YEPEMGKVIRGDKSGVQK---VRAKEIVPGDIVEVS 91 (93)
Q Consensus 59 l~~~~a~Vir~g~~~~~~---i~~~elv~GDiv~v~ 91 (93)
..++.+.|..||+ ... -+...+..||.|.+-
T Consensus 25 ~~~~~v~v~vN~~--iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 25 LDPRRVAVAVNGE--IVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CCCCeEEEEECCE--EcCHHHcCceecCCCCEEEEE
Confidence 4466777888887 432 233469999999874
No 61
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=48.38 E-value=8.9 Score=19.83 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=16.9
Q ss_pred EEeCCccceEEEeCCCCCCCCEE
Q psy6019 66 VIRGDKSGVQKVRAKEIVPGDIV 88 (93)
Q Consensus 66 Vir~g~~~~~~i~~~elv~GDiv 88 (93)
|.-||+ ..+-|...+.+||+|
T Consensus 28 V~VNg~--~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 28 VKVNGK--VVKDPSYIVKPGDVI 48 (48)
T ss_dssp EEETTE--EESSTTSBESTTEEE
T ss_pred EEECCE--EEcCCCCCCCCcCCC
Confidence 456888 677788899999986
No 62
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=47.44 E-value=15 Score=21.83 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=9.7
Q ss_pred CCCCCCEEEEee
Q psy6019 81 EIVPGDIVEVSE 92 (93)
Q Consensus 81 elv~GDiv~v~~ 92 (93)
-+.|||+|.++.
T Consensus 46 ~I~~GD~V~Ve~ 57 (75)
T COG0361 46 RILPGDVVLVEL 57 (75)
T ss_pred EeCCCCEEEEEe
Confidence 467999999875
No 63
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=47.23 E-value=20 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.1
Q ss_pred eeEEEeCCccceEEEeCC----------C--CCCCCEEEEe
Q psy6019 63 MGKVIRGDKSGVQKVRAK----------E--IVPGDIVEVS 91 (93)
Q Consensus 63 ~a~Vir~g~~~~~~i~~~----------e--lv~GDiv~v~ 91 (93)
.+++.|+|+ ...++.. + |.+||+|.+.
T Consensus 212 ~V~l~R~g~--~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp 250 (379)
T PRK15078 212 NVVLTHNGK--EERISLQALMQNGDLSQNRLLYPGDILYVP 250 (379)
T ss_pred eEEEEECCe--EEEEEHHHHHhcCCcccCceeCCCCEEEEC
Confidence 578889988 6666532 1 7899999985
No 64
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=47.19 E-value=52 Score=18.59 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=21.6
Q ss_pred cCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 59 YEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 59 l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+.++.+.+.+||+ ... +...+..||.|.+=
T Consensus 35 ~~~~~v~v~vNg~--iv~-~~~~l~~gD~Veii 64 (70)
T PRK08364 35 FNTESAIAKVNGK--VAL-EDDPVKDGDYVEVI 64 (70)
T ss_pred CCCccEEEEECCE--ECC-CCcCcCCCCEEEEE
Confidence 5556777788998 543 45568999998874
No 65
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=46.44 E-value=61 Score=19.11 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=19.7
Q ss_pred CCeeEEEeCCccceEEEe---CCCCCCCCEEEEee
Q psy6019 61 PEMGKVIRGDKSGVQKVR---AKEIVPGDIVEVSE 92 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~---~~elv~GDiv~v~~ 92 (93)
...+.+-.+|. .++++ ..++.|||-|.+..
T Consensus 14 ~~~A~v~~~G~--~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 14 ENIALVEFCGI--KRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CCEEEEEcCCe--EEEEEEEeeCCCCCCCEEEEec
Confidence 34566655565 45543 35899999998863
No 66
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=45.46 E-value=23 Score=23.19 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=19.6
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+|.-||+ . .-|+.++.+||.+.+.
T Consensus 35 ~V~vnG~--~-~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 35 KVHYNGQ--R-SKPSKIVELNATLTLR 58 (133)
T ss_pred CEEECCE--E-CCCCCccCCCCEEEEE
Confidence 4556888 6 7899999999999885
No 67
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=44.49 E-value=23 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=20.0
Q ss_pred eeEEEeCCccceEEEeCCC----------CCCCCEEEEee
Q psy6019 63 MGKVIRGDKSGVQKVRAKE----------IVPGDIVEVSE 92 (93)
Q Consensus 63 ~a~Vir~g~~~~~~i~~~e----------lv~GDiv~v~~ 92 (93)
.+++.|+|+ ...++..+ |.+||+|.+..
T Consensus 199 ~V~l~R~~~--~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 199 EVHVTRQQH--YFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred EEEEEECCE--EEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 578889888 66654433 67999998853
No 68
>PRK03818 putative transporter; Validated
Probab=44.12 E-value=1.4e+02 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=16.2
Q ss_pred EEEeCCccceE-EEeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQ-KVRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~-~i~~~elv~GDiv~v~ 91 (93)
++.|+|+ .. .-+...+.+||++.+.
T Consensus 236 ~I~R~g~--~~~p~~~~~L~~GDiLlV~ 261 (552)
T PRK03818 236 RLKRGDT--LMVPSPDTIIQLGDLLHLV 261 (552)
T ss_pred EEEECCE--EECCCCCCccCCCCEEEEE
Confidence 4446655 22 2345589999999985
No 69
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=43.84 E-value=14 Score=22.17 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=13.6
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
..++.+++.|||++..+
T Consensus 45 ~~~~~~~~~pGDlif~~ 61 (105)
T PF00877_consen 45 KRVPISELQPGDLIFFK 61 (105)
T ss_dssp EHEEGGG-TTTEEEEEE
T ss_pred cccchhcCCcccEEEEe
Confidence 46899999999999875
No 70
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=43.49 E-value=32 Score=29.03 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.0
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEE
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v 90 (93)
-+.+||+ ..++.++++.+||.+.+
T Consensus 172 ~v~~~g~--~~~~~a~~l~~GD~i~~ 195 (858)
T PRK14898 172 VTRKDNE--VIPVEGSELKIGDWLPV 195 (858)
T ss_pred EEeeCCe--EEEeeHHhCCCCCEEee
Confidence 3456788 89999999999999865
No 71
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=43.23 E-value=58 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.5
Q ss_pred cCCCeeEEEeCCccceEEEe---CCCCCCCCEEEEee
Q psy6019 59 YEPEMGKVIRGDKSGVQKVR---AKEIVPGDIVEVSE 92 (93)
Q Consensus 59 l~~~~a~Vir~g~~~~~~i~---~~elv~GDiv~v~~ 92 (93)
..++.+.|.+||+ ...-. ...+..||.|.+-+
T Consensus 26 ~~~~~i~V~vNg~--~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 26 LDPRGVAVALNGE--IVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCCCcEEEEECCE--EcCHHHcCceecCCCCEEEEEE
Confidence 4456777888887 43222 25799999998743
No 72
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=42.66 E-value=14 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=10.7
Q ss_pred EEEeCCCCCCCCEEEE
Q psy6019 75 QKVRAKEIVPGDIVEV 90 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v 90 (93)
.++++++|++||.+.-
T Consensus 70 gWv~A~~L~~GD~L~~ 85 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLT 85 (130)
T ss_dssp --EEGGG--TTSEEEE
T ss_pred hhhhHhhCCCCCEEEc
Confidence 6799999999999864
No 73
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=42.40 E-value=37 Score=20.06 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.|..||+ .+.---..|..||+|.+.
T Consensus 38 ~V~vNGe--~EtRRgkKlr~gd~V~i~ 62 (73)
T COG2501 38 EVKVNGE--VETRRGKKLRDGDVVEIP 62 (73)
T ss_pred eEEECCe--eeeccCCEeecCCEEEEC
Confidence 5778888 777777899999999874
No 74
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.26 E-value=39 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=21.2
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6019 12 MSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKE 46 (93)
Q Consensus 12 ~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e 46 (93)
+++|.++.+.+.-|--..+|+.+++..+++..+.+
T Consensus 38 I~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~ 72 (165)
T PF11286_consen 38 IALFGGESGGNFHWNLLGVILGLLLTSALLRQLKT 72 (165)
T ss_pred HHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHcc
Confidence 33344444456667777777777777777665443
No 75
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=42.12 E-value=16 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.1
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
..++.+++.|||+|..+
T Consensus 122 ~~V~~~~lqpGDLVfF~ 138 (190)
T PRK10838 122 KSVSRSKLRTGDLVLFR 138 (190)
T ss_pred cCcccCCCCCCcEEEEC
Confidence 45778899999999864
No 76
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=41.84 E-value=27 Score=20.31 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.2
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
|..+..+||+|.+.+
T Consensus 45 ~~~~~k~GD~V~I~e 59 (71)
T TIGR03635 45 ENNECKVGDVVRIIE 59 (71)
T ss_pred CCCCCCCCCEEEEEE
Confidence 455799999999875
No 77
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=41.81 E-value=28 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.9
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+|.-||+ ..+-|...+.+||++.++.
T Consensus 217 ~V~vN~~--~v~~~s~~v~~gD~isiRG 242 (267)
T PLN00051 217 DVRVNWR--EVTKNGTTLKTGDVVSVSG 242 (267)
T ss_pred cEEECCE--EcCCCCCCCCCCCEEEEee
Confidence 3556777 6778889999999999873
No 78
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=40.82 E-value=40 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHhccCCCeeEEEeCCccceEEEeC
Q psy6019 51 SAIEALKEYEPEMGKVIRGDKSGVQKVRA 79 (93)
Q Consensus 51 ~~~~~L~~l~~~~a~Vir~g~~~~~~i~~ 79 (93)
+.++.|.+|..-..+|+|+|+ ...|.+
T Consensus 247 ~llq~l~~m~s~qlTv~R~G~--rhdInV 273 (275)
T COG3031 247 RLLQMLRNMPSLQLTVIRRGK--RHDINV 273 (275)
T ss_pred HHHHhhhcCcceEEEEEecCc--cceeee
Confidence 455666666555789999999 777764
No 79
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=39.05 E-value=41 Score=23.45 Aligned_cols=29 Identities=34% Similarity=0.451 Sum_probs=14.9
Q ss_pred CCeeEEEe-CCccceEEEeC-------CCCCCCCEEEEe
Q psy6019 61 PEMGKVIR-GDKSGVQKVRA-------KEIVPGDIVEVS 91 (93)
Q Consensus 61 ~~~a~Vir-~g~~~~~~i~~-------~elv~GDiv~v~ 91 (93)
++.+.|++ ||. .+..+. .++.|||+|.|.
T Consensus 166 ~s~v~VI~pdG~--v~~~~~a~Wn~~~~~l~PG~~I~Vp 202 (229)
T PF06251_consen 166 KSRVYVIQPDGS--VQKVPVAYWNNQHQELAPGATIYVP 202 (229)
T ss_dssp SSEEEEE-TTS---EEEEE-STTT--EEE--TT-EEEE-
T ss_pred cccEEEEeCCCc--EEEcceehhccCCCCCCCCCEEEEc
Confidence 45678887 676 443322 478999999873
No 80
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=39.00 E-value=41 Score=17.51 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=17.7
Q ss_pred EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 66 VIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 66 Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+.-||+ ...-+...+.+||++.+.
T Consensus 28 V~vn~~--~~~~~~~~v~~~d~i~i~ 51 (70)
T cd00165 28 VLVNGK--VVTKPSYKVKPGDVIEVD 51 (70)
T ss_pred EEECCE--EccCCccCcCCCCEEEEc
Confidence 445787 565677788899988764
No 81
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=38.74 E-value=87 Score=18.73 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=18.7
Q ss_pred eeEEEeCCccceEEEe---C----CCCCCCCEEEEee
Q psy6019 63 MGKVIRGDKSGVQKVR---A----KEIVPGDIVEVSE 92 (93)
Q Consensus 63 ~a~Vir~g~~~~~~i~---~----~elv~GDiv~v~~ 92 (93)
.+++-.+|. .++++ . .++.+||-|.+..
T Consensus 19 ~A~vd~~Gv--~r~V~l~Lv~~~~~~~~vGDyVLVHa 53 (82)
T PRK10413 19 LAQVEVCGI--KRDVNIALICEGNPADLLGQWVLVHV 53 (82)
T ss_pred EEEEEcCCe--EEEEEeeeeccCCcccccCCEEEEec
Confidence 466666676 55554 2 2577999999863
No 82
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=38.35 E-value=85 Score=19.49 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=11.1
Q ss_pred EEEeCCCCCCCCEEEEee
Q psy6019 75 QKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~~ 92 (93)
+-.+.+++.+||.|.+..
T Consensus 115 ~A~s~~~i~~G~~V~Vv~ 132 (144)
T PF01957_consen 115 RARSEDEIPKGDRVRVVG 132 (144)
T ss_dssp EEEESSTB-TT-EEEEEE
T ss_pred EEEeCCCCCCCCEEEEEE
Confidence 344555699999998754
No 83
>smart00363 S4 S4 RNA-binding domain.
Probab=38.21 E-value=38 Score=17.08 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.5
Q ss_pred EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 66 VIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 66 Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+.-||+ ...-+...+.+||+|.+.
T Consensus 28 i~vng~--~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 28 VKVNGK--KVTKPSYIVKPGDVISVR 51 (60)
T ss_pred EEECCE--EecCCCeEeCCCCEEEEc
Confidence 456787 554577788899998774
No 84
>PRK04132 replication factor C small subunit; Provisional
Probab=37.79 E-value=41 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=18.8
Q ss_pred eCCccceEEEeCCCCCCCCEEEEe
Q psy6019 68 RGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 68 r~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.||+ ..+++++++.+||.|.+.
T Consensus 141 ~~g~--~~W~~a~eL~~GD~vavp 162 (846)
T PRK04132 141 KNGE--IKWVKAEELKPGDKLAIP 162 (846)
T ss_pred cCCc--eeeEEHhHcCCCCEEEec
Confidence 4677 789999999999999764
No 85
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=37.69 E-value=30 Score=20.56 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.5
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...+.++..+|||+.+.
T Consensus 64 ~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 64 YKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEcceeCCCCEEEEE
Confidence 56788999999999875
No 86
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=36.80 E-value=42 Score=21.65 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=9.4
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
..+...++.+||+|...
T Consensus 83 ~~~~~p~v~~GdiIe~~ 99 (177)
T PF12969_consen 83 KVFAFPDVRVGDIIEYS 99 (177)
T ss_dssp EEEE--S--TT-EEEEE
T ss_pred EEEEcCCCCCCcEEEEE
Confidence 44888899999999864
No 87
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=36.71 E-value=1e+02 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHhcc
Q psy6019 40 LTEYQKERNAESAIEALKEY 59 (93)
Q Consensus 40 ~i~~~~e~~a~~~~~~L~~l 59 (93)
.+.+|-..|.+|+..++.+.
T Consensus 47 vli~lcssRKkKaaAAi~ee 66 (189)
T PF05568_consen 47 VLIYLCSSRKKKAAAAIEEE 66 (189)
T ss_pred HHHHHHhhhhHHHHhhhhhh
Confidence 34455556666666666543
No 88
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=36.21 E-value=20 Score=23.21 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=13.2
Q ss_pred eCCCCCCCCEEEEeeC
Q psy6019 78 RAKEIVPGDIVEVSEV 93 (93)
Q Consensus 78 ~~~elv~GDiv~v~~~ 93 (93)
.++++++||.|.++-|
T Consensus 73 ~ar~lK~GdfV~L~NV 88 (123)
T cd04498 73 LAKSLKPGDFVRIYNV 88 (123)
T ss_pred HHhhCCCCCEEEEEEE
Confidence 5678999999998753
No 89
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=35.90 E-value=38 Score=18.45 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.2
Q ss_pred EEEeCCC----CCCCCEEEEee
Q psy6019 75 QKVRAKE----IVPGDIVEVSE 92 (93)
Q Consensus 75 ~~i~~~e----lv~GDiv~v~~ 92 (93)
.++|.++ +.+||.+.+++
T Consensus 36 vel~~~~~~l~l~~G~~V~l~P 57 (58)
T PF12857_consen 36 VELPRERRQLGLQPGDRVYLRP 57 (58)
T ss_pred EEeCHhHHhcCCCCCCEEEEEe
Confidence 3455554 88999999976
No 90
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=35.44 E-value=84 Score=17.56 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=20.9
Q ss_pred CeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
+...+..||+ ... ....+..||.|.+-+
T Consensus 48 ~~~~v~vNg~--~v~-~~~~l~~gD~v~i~p 75 (80)
T cd00754 48 ARVRIAVNGE--YVR-LDTPLKDGDEVAIIP 75 (80)
T ss_pred hcEEEEECCe--EcC-CCcccCCCCEEEEeC
Confidence 3567778888 555 667899999998743
No 91
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=34.29 E-value=81 Score=18.52 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.0
Q ss_pred CCCCCCCEEEEee
Q psy6019 80 KEIVPGDIVEVSE 92 (93)
Q Consensus 80 ~elv~GDiv~v~~ 92 (93)
++-.+||++.+++
T Consensus 27 Rdf~VGD~L~L~E 39 (72)
T PF12961_consen 27 RDFQVGDILVLRE 39 (72)
T ss_pred CCCCCCCEEEEEE
Confidence 3889999999875
No 92
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=33.55 E-value=40 Score=30.36 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 64 GKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 64 a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
..+.++|+ ..+..+.+|+|||.+.+-
T Consensus 990 VLv~~~Gk--~i~K~A~dlK~GD~vvIP 1015 (1627)
T PRK14715 990 VMVYENGK--FIKKRAMDVKEGDLMLIP 1015 (1627)
T ss_pred eEEeccCc--cceeehhhcCcCceeecc
Confidence 45567888 688999999999999763
No 93
>KOG3416|consensus
Probab=33.34 E-value=28 Score=22.85 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=10.1
Q ss_pred CCCCCCCEEEEe
Q psy6019 80 KEIVPGDIVEVS 91 (93)
Q Consensus 80 ~elv~GDiv~v~ 91 (93)
.-+.|||||.++
T Consensus 60 ~~~~PGDIirLt 71 (134)
T KOG3416|consen 60 CLIQPGDIIRLT 71 (134)
T ss_pred cccCCccEEEec
Confidence 468999999985
No 94
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=33.14 E-value=45 Score=20.06 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.1
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
|..+..+||+|.+.+
T Consensus 50 ~~n~~k~GD~V~I~e 64 (84)
T PRK05610 50 ENNEAKIGDVVRIME 64 (84)
T ss_pred CCCCCCCCCEEEEEE
Confidence 445789999999875
No 95
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.71 E-value=1e+02 Score=23.49 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=25.4
Q ss_pred HHHHHHhccCCC------eeEEEe-CCccceEEEeCCCCCCCCEEEEe
Q psy6019 51 SAIEALKEYEPE------MGKVIR-GDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 51 ~~~~~L~~l~~~------~a~Vir-~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
...++|..+.|. .+.+.. +|+ ...+++++.+||.+.++
T Consensus 383 ~l~~rL~~lsP~~~L~RGya~v~~~~g~---~i~s~~~~~~~d~i~i~ 427 (438)
T PRK00286 383 ALAQQLEALSPLATLARGYAIVRDEDGK---VIRSAKQLKPGDRLTIR 427 (438)
T ss_pred HHHHHHHhCCChhHhcCceEEEEeCCCC---EeccHHHCCCCCEEEEE
Confidence 445566666665 454433 344 67789999999999875
No 96
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=32.41 E-value=35 Score=19.61 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=13.7
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...+.+++.+||++.+.
T Consensus 54 ~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 54 QYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CceECCeeCCCCEEEEE
Confidence 45678999999999764
No 97
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=32.35 E-value=25 Score=19.23 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=13.1
Q ss_pred EEEeCCccceEEEeC--CCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQKVRA--KEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~--~elv~GDiv~v~ 91 (93)
-+.|+|. ...|. ..+.+||++.+-
T Consensus 32 ~i~R~~~---~~~p~~~~~l~~gD~l~v~ 57 (71)
T PF02080_consen 32 AIKRGGE---IIIPDGDTVLQAGDILIVV 57 (71)
T ss_dssp EEEETEE---EES--TT-BE-TTEEEEEE
T ss_pred EEEECCE---EECCCCCCEECCCCEEEEE
Confidence 4456643 44443 467799999874
No 98
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=32.30 E-value=1.7e+02 Score=21.13 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCc
Q psy6019 27 SAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDK 71 (93)
Q Consensus 27 ~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~ 71 (93)
.++.-+.++.++.++-.....+.++--.+|++...+.+.++..++
T Consensus 140 ~g~~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~~~~ 184 (237)
T PF13748_consen 140 LGLACLLILALFLLILPRFARRNYRLYRRLNNRLEKEVDIIERRK 184 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhhcCC
Confidence 333333333333333333344444444556665556676665554
No 99
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=32.25 E-value=1.1e+02 Score=17.99 Aligned_cols=12 Identities=0% Similarity=0.238 Sum_probs=4.9
Q ss_pred HHHhHHHHHHHH
Q psy6019 45 KERNAESAIEAL 56 (93)
Q Consensus 45 ~e~~a~~~~~~L 56 (93)
...|.++..+++
T Consensus 22 pqkk~~k~~~~m 33 (82)
T PF02699_consen 22 PQKKQQKEHQEM 33 (82)
T ss_dssp HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 100
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=31.62 E-value=1.1e+02 Score=17.61 Aligned_cols=14 Identities=14% Similarity=-0.133 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHhh
Q psy6019 3 DLSLVGCYNMSAMS 16 (93)
Q Consensus 3 ~~~L~~~~~~s~~~ 16 (93)
|+++..++.+++-.
T Consensus 15 DIi~Fila~i~i~i 28 (63)
T PF06341_consen 15 DIILFILAMIFINI 28 (63)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887653
No 101
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=30.70 E-value=81 Score=17.45 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=25.8
Q ss_pred HHHHHHhccCC-----CeeEEEeCCccceEEE--eCCCCCCCCEEEEee
Q psy6019 51 SAIEALKEYEP-----EMGKVIRGDKSGVQKV--RAKEIVPGDIVEVSE 92 (93)
Q Consensus 51 ~~~~~L~~l~~-----~~a~Vir~g~~~~~~i--~~~elv~GDiv~v~~ 92 (93)
..+++|....| +.+.+..||+ ...- ....+..||.|.+-+
T Consensus 26 ~ll~~l~~~~p~~~~~~~~~v~vN~~--~v~~~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 26 DLLEALAERYPELALRDRVAVAVNGE--IVPDDGLDTPLKDGDEVAILP 72 (77)
T ss_dssp HHHHHHCHHTGGGHTTTTEEEEETTE--EEGGGTTTSBEETTEEEEEEE
T ss_pred HHHHHHHhhccccccCccEEEEECCE--EcCCccCCcCcCCCCEEEEEC
Confidence 34455544444 6788888887 3332 256788999988744
No 102
>PRK14701 reverse gyrase; Provisional
Probab=30.59 E-value=58 Score=29.65 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEE
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v 90 (93)
-+.|||+ ..+++++++.+||.|.+
T Consensus 963 lv~~~g~--~~~~~a~~lk~gD~vav 986 (1638)
T PRK14701 963 LVMRDGK--LGWVSAKNIREGDYVAF 986 (1638)
T ss_pred EeecCCc--eeeEEHHHCCcCCEEEe
Confidence 3456787 89999999999999976
No 103
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=30.06 E-value=50 Score=20.59 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 60 EPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 60 ~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.|..++|+-=|.+ ... ..-++++||.|....
T Consensus 43 kp~~g~VvAVG~G-~~~-~~~~Vk~GD~Vl~~~ 73 (100)
T PTZ00414 43 KVNEGTVVAVAAA-TKD-WTPTVKVGDTVLLPE 73 (100)
T ss_pred CCceeEEEEECCC-Ccc-ccceecCCCEEEEcC
Confidence 3556777643321 122 245799999998753
No 104
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=29.88 E-value=2e+02 Score=20.15 Aligned_cols=46 Identities=13% Similarity=-0.023 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCcc
Q psy6019 22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72 (93)
Q Consensus 22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~ 72 (93)
+..+.+.+.+.+. .+|...|.-|+.+..+.++-.+++.++.+.|-|
T Consensus 116 ~~~~~~~~g~~l~-----~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 116 PLNWLDILGIALF-----LIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred cchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 3444444444433 357788888888877776654445667777754
No 105
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=29.60 E-value=94 Score=16.32 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6019 22 RMMLASAKRNLASMAYFALTEYQKERNAE 50 (93)
Q Consensus 22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~ 50 (93)
+.++.+-++|+.++.+.+....+--+|..
T Consensus 10 ~vGL~Sl~vI~~~igm~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 10 DVGLMSLIVIVFTIGMGVFFIRYFIRKMK 38 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44577777777777777666666655543
No 106
>COG4920 Predicted membrane protein [Function unknown]
Probab=29.28 E-value=1.4e+02 Score=21.48 Aligned_cols=27 Identities=7% Similarity=-0.119 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q psy6019 4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMA 36 (93)
Q Consensus 4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~ 36 (93)
.+++++.++||+..+ |.+..++.+++.
T Consensus 16 ~iilfSlvlsffp~~------f~tf~ilyilf~ 42 (249)
T COG4920 16 SIILFSLVLSFFPAE------FFTFLILYILFF 42 (249)
T ss_pred HHHHHHHHHHHhhHH------HHHHHHHHHHHH
Confidence 356777888888766 666555444433
No 107
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=29.23 E-value=42 Score=19.17 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=13.7
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...+.+++.+||++.+.
T Consensus 54 ~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 54 KQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CceECCEeCCCCEEEEE
Confidence 46677899999998874
No 108
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=28.76 E-value=82 Score=23.15 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHhccCCCeeEEEeCCccceEEEe
Q psy6019 49 AESAIEALKEYEPEMGKVIRGDKSGVQKVR 78 (93)
Q Consensus 49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~ 78 (93)
+.+.++.|.++..-+.+|.|||+ ..++.
T Consensus 245 a~~l~~~L~~~tei~ltVeRdGq--~~~i~ 272 (276)
T PRK09681 245 MIALMRQLPSMDSIQLTVLRKGA--RHDIS 272 (276)
T ss_pred HHHHHHHhccCCeEEEEEEECCE--EEEEE
Confidence 34556666666555788999999 77764
No 109
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=28.31 E-value=41 Score=24.23 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=18.6
Q ss_pred eEEEeC--CccceEEEeCCCCCCCCEEEEee
Q psy6019 64 GKVIRG--DKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 64 a~Vir~--g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
..|+|. |. -..---+++++||.|.+++
T Consensus 70 isVk~~~~G~--~S~~Lh~~lk~Gd~l~v~~ 98 (266)
T COG1018 70 ISVKREDGGG--GSNWLHDHLKVGDTLEVSA 98 (266)
T ss_pred EEEEEeCCCc--ccHHHHhcCCCCCEEEEec
Confidence 345553 44 4556667999999999864
No 110
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.23 E-value=1.3e+02 Score=17.73 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHhccCCC-ee-EEEeCCccceEEEeCCCCCCCCEEEEeeC
Q psy6019 50 ESAIEALKEYEPE-MG-KVIRGDKSGVQKVRAKEIVPGDIVEVSEV 93 (93)
Q Consensus 50 ~~~~~~L~~l~~~-~a-~Vir~g~~~~~~i~~~elv~GDiv~v~~~ 93 (93)
+..+++|- .|. .+ .+..||+ .... ..-+..||.|.+.++
T Consensus 36 kd~IEsLG--VP~tEV~~i~vNG~--~v~~-~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 36 KDVIESLG--VPHTEVGLILVNGR--PVDF-DYRLKDGDRVAVYPV 76 (81)
T ss_pred HHHHHHcC--CChHHeEEEEECCE--ECCC-cccCCCCCEEEEEec
Confidence 34556553 233 44 4445887 4443 568889999998764
No 111
>PF14981 FAM165: FAM165 family
Probab=28.22 E-value=1.1e+02 Score=16.61 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q psy6019 25 LASAKRNLASMAYFALTEYQKERNAESAIEALKE 58 (93)
Q Consensus 25 ~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~ 58 (93)
+.-+.-.+++.+.++.+..||..|-+...+++..
T Consensus 11 YILaaKtlilClaFAgvK~yQ~krlEak~~k~~a 44 (51)
T PF14981_consen 11 YILAAKTLILCLAFAGVKMYQRKRLEAKLKKLEA 44 (51)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4456666667777888999999887776666543
No 112
>PRK06033 hypothetical protein; Validated
Probab=28.15 E-value=44 Score=19.92 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=11.9
Q ss_pred EEEeCC---CCCCCCEEEEe
Q psy6019 75 QKVRAK---EIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~---elv~GDiv~v~ 91 (93)
.+++.+ ++.+||++.+.
T Consensus 18 ~~i~l~dlL~L~~GDVI~L~ 37 (83)
T PRK06033 18 SSMPIHQVLRMGRGAVIPLD 37 (83)
T ss_pred ccccHHHHhCCCCCCEEEeC
Confidence 444444 67899999874
No 113
>KOG3955|consensus
Probab=27.97 E-value=16 Score=27.36 Aligned_cols=42 Identities=57% Similarity=0.989 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6019 2 ADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEY 43 (93)
Q Consensus 2 ~~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~ 43 (93)
||+.|+||+.+|+....+++.+.+++|-=.+=-+.++.+-++
T Consensus 234 adLSLVGCYnlsfiPegkraqlllESAKkNLRgMaFFGltEf 275 (361)
T KOG3955|consen 234 ADLSLVGCYNLSFIPEGKRAQLLLESAKKNLRGMAFFGLTEF 275 (361)
T ss_pred hhcceeeeecccccCcchHHHHHHHHHHhhhhcceecchhHH
Confidence 799999999999997777778888888877766666655443
No 114
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=27.95 E-value=61 Score=19.11 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.5
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...+.++..+||++.+.
T Consensus 64 ~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 64 YREPVDEVPAGNIVLIV 80 (93)
T ss_pred CEEEccccCCCCEEEEE
Confidence 55788999999999875
No 115
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=27.90 E-value=46 Score=23.38 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=12.7
Q ss_pred eeEEEe-CCccceEEEeCCCCCCCCEEE
Q psy6019 63 MGKVIR-GDKSGVQKVRAKEIVPGDIVE 89 (93)
Q Consensus 63 ~a~Vir-~g~~~~~~i~~~elv~GDiv~ 89 (93)
.++|+. ||. ..++++|.+||.|.
T Consensus 5 gT~vlmaDG~----~k~ie~i~~Gd~vm 28 (215)
T PF05203_consen 5 GTRVLMADGS----IKPIEDIKIGDQVM 28 (215)
T ss_dssp T-EEEBTTS-----EEEGGG--TT-EEE
T ss_pred CCEEEecCCC----eeEEeecccCCEEE
Confidence 345665 454 56789999999986
No 116
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=27.74 E-value=53 Score=19.35 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.2
Q ss_pred eEEEeCCCCCCCCEEEE
Q psy6019 74 VQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 74 ~~~i~~~elv~GDiv~v 90 (93)
..+++-+.++|||.|.-
T Consensus 8 T~~v~Rq~V~PG~~v~~ 24 (73)
T PRK11354 8 TDEIPRQCVTPGDYVLH 24 (73)
T ss_pred ceeecccccCCceEEEE
Confidence 58888899999998764
No 117
>COG3739 Uncharacterized integral membrane protein [Function unknown]
Probab=27.74 E-value=2.3e+02 Score=20.55 Aligned_cols=40 Identities=15% Similarity=-0.042 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHh---hcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6019 2 ADLSLVGCYNMSAM---STEQRNRMMLASAKRNLASMAYFALTEYQK 45 (93)
Q Consensus 2 ~~~~L~~~~~~s~~---~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~ 45 (93)
.|++|+.|.++-++ ++-+. |+|..+|...-+++..++-+.
T Consensus 48 YD~Lli~~i~~Q~~mi~sklEt----~DElkvI~lFHliG~aLEifK 90 (263)
T COG3739 48 YDFLLIIAILIQVIMIVSKLET----WDELKVIMLFHLIGLALEIFK 90 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHH
Confidence 48888888877755 22222 888888888777666655544
No 118
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=27.23 E-value=50 Score=18.99 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=13.8
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...|.+++.+||++.+.
T Consensus 57 ~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 57 KRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeeECcEECCCCEEEEE
Confidence 56778899999998765
No 119
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=27.03 E-value=42 Score=19.07 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=7.1
Q ss_pred CCCCCCCEEEEe
Q psy6019 80 KEIVPGDIVEVS 91 (93)
Q Consensus 80 ~elv~GDiv~v~ 91 (93)
.++.+||++.+.
T Consensus 27 ~~L~~Gdvi~l~ 38 (77)
T PF01052_consen 27 LNLKVGDVIPLD 38 (77)
T ss_dssp HC--TT-EEEEC
T ss_pred hcCCCCCEEEeC
Confidence 378899999875
No 120
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=26.82 E-value=73 Score=19.36 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=18.7
Q ss_pred CCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
|..++|+-=|.+ .....-++.+||.|....
T Consensus 35 ~~~G~VvavG~g--~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 35 PMKAEVVAVGKL--DDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred cceEEEEEECCC--CccccccccCCCEEEEcc
Confidence 456677754431 122345799999998753
No 121
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=26.58 E-value=67 Score=19.34 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=12.2
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
|..+..+||+|.+.+
T Consensus 47 e~n~~~~GD~V~I~e 61 (84)
T CHL00142 47 EENECNIGDQVLIEE 61 (84)
T ss_pred CCCCCCCCCEEEEEE
Confidence 555799999999875
No 122
>COG2323 Predicted membrane protein [Function unknown]
Probab=26.38 E-value=2.4e+02 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=10.5
Q ss_pred HHHHhccCCCeeEEEeCCc
Q psy6019 53 IEALKEYEPEMGKVIRGDK 71 (93)
Q Consensus 53 ~~~L~~l~~~~a~Vir~g~ 71 (93)
++++. ..+...+++||+
T Consensus 86 ~r~~l--~G~P~vlI~nGk 102 (224)
T COG2323 86 LRKLL--EGKPTVLIENGK 102 (224)
T ss_pred HHHhh--cCCCEEEEeCCe
Confidence 34453 345566789997
No 123
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=26.19 E-value=66 Score=18.74 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.8
Q ss_pred CCCCCCCCEEEEee
Q psy6019 79 AKEIVPGDIVEVSE 92 (93)
Q Consensus 79 ~~elv~GDiv~v~~ 92 (93)
..++.+||.|.+..
T Consensus 42 ~~~~~~Gd~V~vtG 55 (78)
T cd04486 42 GADVAVGDLVRVTG 55 (78)
T ss_pred CCCCCCCCEEEEEE
Confidence 57899999999863
No 124
>COG5462 Predicted secreted (periplasmic) protein [Function unknown]
Probab=25.91 E-value=1.8e+02 Score=19.18 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHh
Q psy6019 34 SMAYFALTEYQKERNAESAIEALK 57 (93)
Q Consensus 34 ~v~l~~~i~~~~e~~a~~~~~~L~ 57 (93)
+++..+++.|-..++++..+..++
T Consensus 12 imv~Aa~vtysIK~~ae~~l~~vr 35 (138)
T COG5462 12 IMVAAATVTYSIKHEAETQLAEVR 35 (138)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333344444444555554444433
No 125
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=25.76 E-value=55 Score=18.97 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=9.5
Q ss_pred CCCCCCEEEEee
Q psy6019 81 EIVPGDIVEVSE 92 (93)
Q Consensus 81 elv~GDiv~v~~ 92 (93)
-+.+||+|.++.
T Consensus 44 ~I~~GD~V~Ve~ 55 (68)
T TIGR00008 44 RILPGDKVKVEL 55 (68)
T ss_pred EECCCCEEEEEE
Confidence 378999998863
No 126
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.40 E-value=1.8e+02 Score=23.16 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy6019 28 AKRNLASMAYFALTEYQKERNAESAIEALK 57 (93)
Q Consensus 28 ~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~ 57 (93)
.++|++++++..++++|...+..+.++.|.
T Consensus 6 ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le 35 (569)
T PRK04778 6 IIAIVVIIIIAYLAGLILRKRNYKRIDELE 35 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455566888877776666663
No 127
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.32 E-value=1.8e+02 Score=21.65 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6019 26 ASAKRNLASMAYFALTEYQKERNAESAI 53 (93)
Q Consensus 26 ~~~~~I~~~v~l~~~i~~~~e~~a~~~~ 53 (93)
.+.+.|++++++..++-...+||-.+.+
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566667677777777777788764433
No 128
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.94 E-value=2.1e+02 Score=18.71 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=11.7
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
..+++.+||.|.+..
T Consensus 115 ~~~~l~~G~~V~Vv~ 129 (140)
T COG1585 115 SDEDLPAGDRVEVVG 129 (140)
T ss_pred cCCCCCCCCEEEEEE
Confidence 447888999999864
No 129
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=24.82 E-value=98 Score=19.18 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=18.1
Q ss_pred CCeeEEEeCCccceEEEeCCCCCCCCEEEE
Q psy6019 61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEV 90 (93)
Q Consensus 61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v 90 (93)
+..+.+.+||+. ..++|.++......+.+
T Consensus 26 ~~~~~I~~~g~~-~~~i~L~~~~~~~~i~i 54 (113)
T PF07009_consen 26 GKYAVIYVDGKE-VKRIPLDKVNEDKTIEI 54 (113)
T ss_dssp EEEEEEEETTEE-EEEEETTS-BSEEEEEE
T ss_pred CeEEEEEECCEE-EEEEECCCCCCCEEEEE
Confidence 457888889984 45787777544444443
No 130
>PF00366 Ribosomal_S17: Ribosomal protein S17; InterPro: IPR000266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal proteins catalyse ribosome assembly and stabilise the rRNA, tuning the structure of the ribosome for optimal function. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S17 is known to bind specifically to the 5' end of 16S ribosomal RNA in Escherichia coli (primary rRNA binding protein), and is thought to be involved in the recognition of termination codons. Experimental evidence [] has revealed that S17 has virtually no groups exposed on the ribosomal surface.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_Q 2VHP_Q 3BBN_Q 2QAL_Q 3OAR_Q 1VS5_Q 3KC4_Q 2AW7_Q 3E1C_J 2AVY_Q ....
Probab=24.79 E-value=73 Score=18.26 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=11.1
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
|..+..+||+|.+.+
T Consensus 40 ~~~~~~vGD~V~I~e 54 (69)
T PF00366_consen 40 ENNICKVGDKVRIRE 54 (69)
T ss_dssp TTSSSTTTSEEEEEE
T ss_pred CccCCCCCCEEEEEe
Confidence 445566899999865
No 131
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.78 E-value=2.2e+02 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=10.9
Q ss_pred eEEEeCCCCCCCCEEEEe
Q psy6019 74 VQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 74 ~~~i~~~elv~GDiv~v~ 91 (93)
..-+.+..+.-|-+|.++
T Consensus 98 ~v~VNst~l~dG~iVki~ 115 (149)
T PF11694_consen 98 EVYVNSTALTDGMIVKIG 115 (149)
T ss_pred eEEEecccccCCeEEEEC
Confidence 355666666666666553
No 132
>PRK10318 hypothetical protein; Provisional
Probab=24.44 E-value=1.5e+02 Score=19.21 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHHHhcc-CCCeeEEEeCCcc
Q psy6019 51 SAIEALKEY-EPEMGKVIRGDKS 72 (93)
Q Consensus 51 ~~~~~L~~l-~~~~a~Vir~g~~ 72 (93)
+.++.|... ....|+-+|||.|
T Consensus 27 ~ei~~L~~~~~~s~c~FiRNG~~ 49 (121)
T PRK10318 27 RINAMLEGLAQKKDCTFVRNGDE 49 (121)
T ss_pred HHHHHHHHHHhcCCCEEEECCCc
Confidence 445555554 4558999999984
No 133
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=24.15 E-value=54 Score=18.93 Aligned_cols=17 Identities=12% Similarity=0.446 Sum_probs=12.2
Q ss_pred EEEeCC---CCCCCCEEEEe
Q psy6019 75 QKVRAK---EIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~---elv~GDiv~v~ 91 (93)
.+++.+ ++.+||++.+.
T Consensus 19 ~~itl~ell~L~~Gdvi~L~ 38 (77)
T TIGR02480 19 TRITLGDLLKLGEGSVIELD 38 (77)
T ss_pred eEeEHHHHhcCCCCCEEEcC
Confidence 455544 67899999874
No 134
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=24.11 E-value=61 Score=18.88 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.6
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
+..+.+++.+|||+-+.
T Consensus 56 ~~~~v~~~~aGdI~ai~ 72 (85)
T cd03690 56 EVVTADTVTAGDIAILT 72 (85)
T ss_pred CeEECcEECCCCEEEEE
Confidence 45677999999999774
No 135
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=23.94 E-value=1e+02 Score=20.43 Aligned_cols=31 Identities=0% Similarity=-0.040 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhc--chhhhhhHHHHHHHHHHH
Q psy6019 5 SLVGCYNMSAMST--EQRNRMMLASAKRNLASM 35 (93)
Q Consensus 5 ~L~~~~~~s~~~~--~~~~~~~~~~~~~I~~~v 35 (93)
++++++++-++.+ .++.+.-+..|.++++++
T Consensus 3 ~~ll~~~ie~LlP~~~~kkYvr~v~GLili~~i 35 (188)
T PF09581_consen 3 IILLATFIEMLLPNSKYKKYVRFVLGLILILAI 35 (188)
T ss_pred EeHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 3455555555543 344555566665555443
No 136
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=23.91 E-value=3.6e+02 Score=24.16 Aligned_cols=14 Identities=7% Similarity=-0.353 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcc
Q psy6019 5 SLVGCYNMSAMSTE 18 (93)
Q Consensus 5 ~L~~~~~~s~~~~~ 18 (93)
++++.+++||+.+.
T Consensus 160 i~l~~~v~Swifg~ 173 (1227)
T COG5038 160 IVLIGSVASWIFGY 173 (1227)
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888988766
No 137
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.64 E-value=1.3e+02 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.6
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
.--+++++.+||.+.++
T Consensus 293 vI~s~~~l~~gd~i~i~ 309 (319)
T PF02601_consen 293 VITSVKQLKPGDEIEIR 309 (319)
T ss_pred EECCHHHCCCCCEEEEE
Confidence 66689999999999875
No 138
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=23.53 E-value=66 Score=17.71 Aligned_cols=11 Identities=55% Similarity=0.936 Sum_probs=9.5
Q ss_pred CCCCCCEEEEe
Q psy6019 81 EIVPGDIVEVS 91 (93)
Q Consensus 81 elv~GDiv~v~ 91 (93)
.+++||.|.++
T Consensus 40 ~~~vGD~V~~~ 50 (64)
T cd04451 40 RILPGDRVKVE 50 (64)
T ss_pred ccCCCCEEEEE
Confidence 48999999887
No 139
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=23.53 E-value=61 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=10.3
Q ss_pred CCCCCCCEEEEe
Q psy6019 80 KEIVPGDIVEVS 91 (93)
Q Consensus 80 ~elv~GDiv~v~ 91 (93)
-.+.|||+|.+.
T Consensus 138 ~~l~pGDvi~l~ 149 (164)
T PF13550_consen 138 LALEPGDVIALS 149 (164)
T ss_pred ccCCCCCEEEEE
Confidence 479999999986
No 140
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.15 E-value=2e+02 Score=17.91 Aligned_cols=23 Identities=4% Similarity=0.084 Sum_probs=9.5
Q ss_pred HHhHHHHHHHHhccCCCeeEEEe
Q psy6019 46 ERNAESAIEALKEYEPEMGKVIR 68 (93)
Q Consensus 46 e~~a~~~~~~L~~l~~~~a~Vir 68 (93)
..|.++..+++.+-..+--+|+-
T Consensus 39 qkK~~k~~~~~~~~Lk~Gd~VvT 61 (106)
T PRK05585 39 QQKRQKEHKKMLSSLAKGDEVVT 61 (106)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEE
Confidence 33444444444433333344443
No 141
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=23.13 E-value=2e+02 Score=24.46 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC
Q psy6019 25 LASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPE 62 (93)
Q Consensus 25 ~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~ 62 (93)
|.-++++++++ .-++-+=.-.++.++.++++.++|+
T Consensus 576 wGlAIILlTII--VRLlLlPLtiKS~kSmaKMq~LQPe 611 (795)
T PRK01001 576 WGISIILLTVF--LKLLLYPLNAWSIRSMRRMQKLSPY 611 (795)
T ss_pred HHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHhhHH
Confidence 54444444333 2333333345666666677766665
No 142
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.90 E-value=1.4e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6019 26 ASAKRNLASMAYFALTEYQKERNAESAIE 54 (93)
Q Consensus 26 ~~~~~I~~~v~l~~~i~~~~e~~a~~~~~ 54 (93)
.+.+.|+.++++..++-...+||-++.++
T Consensus 314 aSiIAIvvIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 35566666777777788888887665444
No 143
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=22.87 E-value=69 Score=20.72 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.1
Q ss_pred eCCCCCCCCEEEEee
Q psy6019 78 RAKEIVPGDIVEVSE 92 (93)
Q Consensus 78 ~~~elv~GDiv~v~~ 92 (93)
...++++||.|.+..
T Consensus 69 ~L~~l~~GD~I~v~~ 83 (144)
T cd05829 69 RLGDLRKGDKVEVTR 83 (144)
T ss_pred chhcCCCCCEEEEEE
Confidence 346899999999864
No 144
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=22.75 E-value=1.8e+02 Score=17.26 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=7.5
Q ss_pred HHHhccCCCeeEEEeCC
Q psy6019 54 EALKEYEPEMGKVIRGD 70 (93)
Q Consensus 54 ~~L~~l~~~~a~Vir~g 70 (93)
+.+.++.|.+--+..+|
T Consensus 33 ~m~~~L~~Gd~VvT~gG 49 (84)
T TIGR00739 33 KLIESLKKGDKVLTIGG 49 (84)
T ss_pred HHHHhCCCCCEEEECCC
Confidence 44455555543333333
No 145
>COG4872 Predicted membrane protein [Function unknown]
Probab=22.70 E-value=2e+02 Score=22.20 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcc
Q psy6019 5 SLVGCYNMSAMSTE 18 (93)
Q Consensus 5 ~L~~~~~~s~~~~~ 18 (93)
+|++++++.|+..+
T Consensus 55 lLlgagvi~fVAAN 68 (394)
T COG4872 55 LLLGAGVITFVAAN 68 (394)
T ss_pred HHHHHHHHHHHHhh
Confidence 67888888887543
No 146
>COG1372 Intein/homing endonuclease [DNA replication, recombination, and repair]
Probab=22.68 E-value=69 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.9
Q ss_pred CCccceEEEeCCCCCCCCEEEEe
Q psy6019 69 GDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 69 ~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+|+ ..++++.++.+||.+.+.
T Consensus 88 ~~~--~~~~~a~~lk~GD~i~~~ 108 (420)
T COG1372 88 NGE--LGWVKAGELKEGDRIAVP 108 (420)
T ss_pred CCe--EEEEEhhhcccCCEeecc
Confidence 566 789999999999999764
No 147
>PTZ00046 rifin; Provisional
Probab=22.58 E-value=1.4e+02 Score=22.80 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6019 26 ASAKRNLASMAYFALTEYQKERNAESAIE 54 (93)
Q Consensus 26 ~~~~~I~~~v~l~~~i~~~~e~~a~~~~~ 54 (93)
.+.+.|+.++++..++-...+||-++.++
T Consensus 319 aSiiAIvVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 35566667777777788888887665444
No 148
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=22.57 E-value=61 Score=19.00 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=13.0
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
+..+.+++.+|||+.+.
T Consensus 55 ~~~~v~~a~aGdIv~v~ 71 (85)
T cd03689 55 DRETVDEAYPGDIIGLV 71 (85)
T ss_pred CeeEcCEECCCCEEEEE
Confidence 44567889999998774
No 149
>CHL00084 rpl19 ribosomal protein L19
Probab=22.53 E-value=77 Score=20.34 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=10.9
Q ss_pred eCCCCCCCCEEEEe
Q psy6019 78 RAKEIVPGDIVEVS 91 (93)
Q Consensus 78 ~~~elv~GDiv~v~ 91 (93)
+..+..|||+|.+.
T Consensus 19 ~~p~f~~GDtV~V~ 32 (117)
T CHL00084 19 NLPKIRVGDTVKVG 32 (117)
T ss_pred CCCccCCCCEEEEE
Confidence 45588999998875
No 150
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=69 Score=20.30 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=10.1
Q ss_pred CCCCCCCEEEEe
Q psy6019 80 KEIVPGDIVEVS 91 (93)
Q Consensus 80 ~elv~GDiv~v~ 91 (93)
+++.|||.|...
T Consensus 32 r~ik~GD~IiF~ 43 (111)
T COG4043 32 RQIKPGDKIIFN 43 (111)
T ss_pred cCCCCCCEEEEc
Confidence 489999999875
No 151
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=22.29 E-value=1.7e+02 Score=17.72 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCeeEEEeCCccce----EEEeCCCCCCCCEEEEee
Q psy6019 61 PEMGKVIRGDKSGV----QKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 61 ~~~a~Vir~g~~~~----~~i~~~elv~GDiv~v~~ 92 (93)
|..++|+-=|.+.. ..+| -++++||.|....
T Consensus 35 ~~~G~VvaVG~G~~~~~G~~~~-~~vk~GD~Vlf~~ 69 (95)
T PRK00364 35 PQEGEVVAVGPGRRLDNGERVP-LDVKVGDKVLFGK 69 (95)
T ss_pred cceEEEEEECCCeECCCCCEee-cccCCCCEEEEcC
Confidence 45677775333101 1233 3799999998753
No 152
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.17 E-value=1.7e+02 Score=22.89 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=23.7
Q ss_pred HHHHHHHhccCCCeeEEEeCCccceEEEeCC--CCCCCCEEEEe
Q psy6019 50 ESAIEALKEYEPEMGKVIRGDKSGVQKVRAK--EIVPGDIVEVS 91 (93)
Q Consensus 50 ~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~--elv~GDiv~v~ 91 (93)
.+-+.+.++..-.-+-+-|||+ --.+.. -+.|||++.+-
T Consensus 166 Yrhi~sI~qk~~RIvl~YRN~k---lll~~~slvlqp~D~lLVv 206 (471)
T COG3400 166 YRHIGSIRQKEYRIVLLYRNDK---LLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred hhhhhhhhhheeEEEEEEECCE---EEEeccceEecCCCEEEEe
Confidence 3444445444344566679998 444444 46699999873
No 153
>PRK05326 potassium/proton antiporter; Reviewed
Probab=21.99 E-value=77 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=16.4
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
.+.|||+. ...-+...+.+||++.+-
T Consensus 445 ~v~R~g~~-~~p~~~t~L~~GD~l~l~ 470 (562)
T PRK05326 445 LIIRDGKL-LVPTGSTRLKAGDVLLVL 470 (562)
T ss_pred EEEECCEE-eCCCCCCeECCCCEEEEE
Confidence 44577762 222344578899999874
No 154
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=21.70 E-value=73 Score=18.20 Aligned_cols=10 Identities=60% Similarity=0.983 Sum_probs=9.0
Q ss_pred CCCCCEEEEe
Q psy6019 82 IVPGDIVEVS 91 (93)
Q Consensus 82 lv~GDiv~v~ 91 (93)
+.+||+|.++
T Consensus 47 i~vGD~V~ve 56 (72)
T PRK00276 47 ILPGDKVTVE 56 (72)
T ss_pred cCCCCEEEEE
Confidence 7899999987
No 155
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=21.61 E-value=94 Score=16.83 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=9.7
Q ss_pred CCCCCCCEEEEe
Q psy6019 80 KEIVPGDIVEVS 91 (93)
Q Consensus 80 ~elv~GDiv~v~ 91 (93)
..+++||.|.+.
T Consensus 36 ~~~~VGD~V~~~ 47 (68)
T cd04466 36 NPPAVGDRVEFE 47 (68)
T ss_pred CCCCCCcEEEEE
Confidence 457999999875
No 156
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=21.56 E-value=1.7e+02 Score=20.15 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=23.4
Q ss_pred HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019 49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~ 91 (93)
+.+.++++.+ .. .|.-||+ ....+...+.+||.|.+.
T Consensus 14 Sr~~~~~li~--~g--~V~VNg~--~~~~~~~~l~~gd~I~l~ 50 (232)
T PRK10839 14 SRAIAGRELR--AN--RVTVDGE--IVKNGAFKLLPEHDVAYD 50 (232)
T ss_pred CHHHHHHHHH--cC--eEEECCE--EeccCCcCcCCCCEEEEC
Confidence 3445555543 22 4445887 555577789999998874
No 157
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=21.55 E-value=72 Score=18.79 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=9.1
Q ss_pred CCCCCEEEEee
Q psy6019 82 IVPGDIVEVSE 92 (93)
Q Consensus 82 lv~GDiv~v~~ 92 (93)
+.+||.|.+.+
T Consensus 39 I~~GD~VlV~~ 49 (78)
T cd04456 39 IKRGDFLIVDP 49 (78)
T ss_pred EcCCCEEEEEe
Confidence 78999998864
No 158
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.51 E-value=2.3e+02 Score=18.09 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhh
Q psy6019 5 SLVGCYNMSAMS 16 (93)
Q Consensus 5 ~L~~~~~~s~~~ 16 (93)
+++++++++|+.
T Consensus 42 ll~~~gii~fvA 53 (145)
T PF09925_consen 42 LLLGLGIILFVA 53 (145)
T ss_pred HHHHHHHHHHHH
Confidence 456666677663
No 159
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=21.33 E-value=54 Score=19.39 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=14.0
Q ss_pred hHHHHHHHHH--HhhcchhhhhhH
Q psy6019 4 LSLVGCYNMS--AMSTEQRNRMML 25 (93)
Q Consensus 4 ~~L~~~~~~s--~~~~~~~~~~~~ 25 (93)
.+|+.|+++| ++.+.++..++|
T Consensus 8 ~~lL~caLFSGqllA~~~GHe~~~ 31 (76)
T PF10829_consen 8 ALLLICALFSGQLLAGHQGHEYLW 31 (76)
T ss_pred HHHHHHHHhcchHHhccCCcceee
Confidence 5778888887 444555555555
No 160
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=1.3e+02 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019 65 KVIRGDKSGVQKVRAKEIVPGDIVEVSE 92 (93)
Q Consensus 65 ~Vir~g~~~~~~i~~~elv~GDiv~v~~ 92 (93)
.|..||+ ... +..-+.+||++.+..
T Consensus 38 ~v~vNg~--~v~-~~~~l~~gd~i~~~~ 62 (289)
T COG0564 38 RVRVNGK--KVK-PSYKLKPGDVVRIPL 62 (289)
T ss_pred CEEECCE--Ecc-CCeeeCCCCEEEEec
Confidence 5677898 677 999999999998753
No 161
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.07 E-value=1.5e+02 Score=15.72 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=21.5
Q ss_pred CCCeeEEEe-CCccceEEEeCC-CCCCCCEEEEee
Q psy6019 60 EPEMGKVIR-GDKSGVQKVRAK-EIVPGDIVEVSE 92 (93)
Q Consensus 60 ~~~~a~Vir-~g~~~~~~i~~~-elv~GDiv~v~~ 92 (93)
..+.+.|+. ||+ ..+++.. +..+||.|.+.+
T Consensus 4 ~~~~aiVlT~dGe--F~~ik~~~~~~vG~eI~~~~ 36 (56)
T PF12791_consen 4 KKKYAIVLTPDGE--FIKIKRKPGMEVGQEIEFDE 36 (56)
T ss_pred cCCEEEEEcCCCc--EEEEeCCCCCcccCEEEEec
Confidence 345677774 677 6666655 688999998754
No 162
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=20.75 E-value=85 Score=19.78 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEee
Q psy6019 80 KEIVPGDIVEVSE 92 (93)
Q Consensus 80 ~elv~GDiv~v~~ 92 (93)
+.+.+||.|.+..
T Consensus 30 ~~ikvGD~I~f~~ 42 (109)
T cd06555 30 QQIKVGDKILFND 42 (109)
T ss_pred hcCCCCCEEEEEE
Confidence 4799999998853
No 163
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=20.54 E-value=68 Score=18.34 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=12.6
Q ss_pred EEEeCCCCCCCCEEEEe
Q psy6019 75 QKVRAKEIVPGDIVEVS 91 (93)
Q Consensus 75 ~~i~~~elv~GDiv~v~ 91 (93)
...+.+++.+||++.+.
T Consensus 53 ~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 53 EMEEVEEAGAGDICAIF 69 (81)
T ss_pred CceEccEECCCCEEEEE
Confidence 34567888899988764
No 164
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.25 E-value=2.1e+02 Score=23.74 Aligned_cols=34 Identities=12% Similarity=-0.104 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHhccC
Q psy6019 27 SAKRNLASMAYFALTEYQKERNAE-SAIEALKEYE 60 (93)
Q Consensus 27 ~~~~I~~~v~l~~~i~~~~e~~a~-~~~~~L~~l~ 60 (93)
.+..+.+.++++.+++.+.|.+++ ++-+.+.++.
T Consensus 64 ~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~ 98 (679)
T PRK01122 64 FNLAITLWLWFTVLFANFAEALAEGRGKAQADSLR 98 (679)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888776 5666666663
No 165
>KOG3403|consensus
Probab=20.24 E-value=70 Score=21.02 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=8.3
Q ss_pred CCCCCEEEEe
Q psy6019 82 IVPGDIVEVS 91 (93)
Q Consensus 82 lv~GDiv~v~ 91 (93)
+.+||||+++
T Consensus 71 i~~GDIiLv~ 80 (145)
T KOG3403|consen 71 INQGDIILVG 80 (145)
T ss_pred ecCCCEEEEe
Confidence 5789999885
No 166
>PF14851 FAM176: FAM176 family
Probab=20.20 E-value=2.8e+02 Score=18.57 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=19.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6019 18 EQRNRMMLASAKRNLASMAYFALTEYQK 45 (93)
Q Consensus 18 ~~~~~~~~~~~~~I~~~v~l~~~i~~~~ 45 (93)
.++..+||..++-.-+++.+..++....
T Consensus 19 PE~~aLYFv~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 19 PERFALYFVSGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3557888888877777777666655544
No 167
>PRK04972 putative transporter; Provisional
Probab=20.04 E-value=1.6e+02 Score=23.60 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.2
Q ss_pred EEEeCCccceEE-EeCCCCCCCCEEEEe
Q psy6019 65 KVIRGDKSGVQK-VRAKEIVPGDIVEVS 91 (93)
Q Consensus 65 ~Vir~g~~~~~~-i~~~elv~GDiv~v~ 91 (93)
.+.|+|+ ... -+.+.+.+||++.+.
T Consensus 248 ~I~R~g~--~~~p~~dt~L~~GDiL~V~ 273 (558)
T PRK04972 248 RIRRNGI--LANPDGDAVLQMGDEIALV 273 (558)
T ss_pred EEEECCE--EecCCCCCEeCCCCEEEEE
Confidence 4456665 322 244689999999885
No 168
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=20.00 E-value=2.2e+02 Score=17.31 Aligned_cols=29 Identities=21% Similarity=0.019 Sum_probs=18.9
Q ss_pred CeeEEEeCCccceEEEeC---------CCCCCCCEEEEee
Q psy6019 62 EMGKVIRGDKSGVQKVRA---------KEIVPGDIVEVSE 92 (93)
Q Consensus 62 ~~a~Vir~g~~~~~~i~~---------~elv~GDiv~v~~ 92 (93)
.+++|-..|. .++++. .++.+||-|.+..
T Consensus 15 ~~A~vd~~Gv--~reV~l~Lv~~~~~~~~~~vGDyVLVHa 52 (90)
T PRK10409 15 NQAKVDVCGI--QRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_pred CeEEEEcCCe--EEEEEEeeecccCCCCccCCCCEEEEec
Confidence 4566666665 454432 2589999999863
Done!