Query         psy6019
Match_columns 93
No_of_seqs    129 out of 1018
Neff          7.4 
Searched_HMMs 29240
Date          Sat Aug 17 00:28:04 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy6019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6019hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ixz_A Potassium-transporting   99.6 1.6E-15 5.5E-20  123.0   7.8   87    4-92    112-205 (1034)
  2 1mhs_A Proton pump, plasma mem  99.6 4.7E-15 1.6E-19  119.6   7.9   81    4-92    126-206 (920)
  3 2zxe_A Na, K-ATPase alpha subu  99.5 9.8E-15 3.3E-19  118.5   8.2   87    4-92    107-200 (1028)
  4 3ar4_A Sarcoplasmic/endoplasmi  99.5 1.1E-13 3.6E-18  112.0   8.9   88    4-92     64-156 (995)
  5 3b8c_A ATPase 2, plasma membra  99.4 4.9E-15 1.7E-19  119.0  -4.0   87    4-92     71-158 (885)
  6 3j08_A COPA, copper-exporting   99.2 1.9E-11 6.7E-16   95.2   4.6   67   24-92     95-161 (645)
  7 3j09_A COPA, copper-exporting   99.2 3.3E-11 1.1E-15   94.9   5.9   67   24-92    173-239 (723)
  8 3rfu_A Copper efflux ATPase; a  99.1   7E-11 2.4E-15   93.5   7.4   69   22-92    185-254 (736)
  9 2kij_A Copper-transporting ATP  98.8 3.1E-09 1.1E-13   67.7   4.0   47   46-92      2-52  (124)
 10 2hc8_A PACS, cation-transporti  98.8 5.1E-09 1.8E-13   65.7   4.1   39   52-92      2-40  (113)
 11 1bg5_A MAB, fusion protein of   92.5 0.00031 1.1E-08   48.0  -9.5   34   36-69    221-254 (254)
 12 2jmz_A Hypothetical protein MJ  84.0     1.5 5.2E-05   28.6   4.3   24   66-91    107-130 (186)
 13 2lcj_A PAB POLC intein; hydrol  83.7     1.5 5.1E-05   28.6   4.2   30   60-91     90-120 (185)
 14 2k1g_A Lipoprotein SPR; soluti  68.0     2.6 8.8E-05   26.6   1.8   17   75-91     61-77  (135)
 15 2l32_A Small archaeal modifier  67.0     4.5 0.00015   22.7   2.5   31   58-92     31-61  (74)
 16 1at0_A 17-hedgehog; developmen  66.2     3.8 0.00013   25.8   2.3   25   62-90      4-29  (145)
 17 2cw8_A Endonuclease PI-pkoii;   65.6     8.1 0.00028   29.3   4.5   23   66-90    100-122 (537)
 18 3p42_A Predicted protein; beta  64.3     6.9 0.00024   26.7   3.5   29   61-91    165-201 (236)
 19 1at0_A 17-hedgehog; developmen  62.8     5.4 0.00018   25.0   2.6   18   74-91     84-101 (145)
 20 2jyx_A Lipoprotein SPR; soluti  60.4     5.1 0.00017   24.9   2.1   17   75-91     61-77  (136)
 21 3jxo_A TRKA-N domain protein;   53.6     9.1 0.00031   21.2   2.3   24   65-91     45-70  (86)
 22 4e2u_A PHO RADA intein; HINT-f  53.2      22 0.00076   22.6   4.4   17   75-91    107-123 (168)
 23 3gt2_A Putative uncharacterize  51.4     7.1 0.00024   24.4   1.7   17   75-91     83-99  (142)
 24 3aqy_A Beta-1,3-glucan-binding  49.8      15 0.00053   22.1   3.0   23   68-91     56-78  (106)
 25 2in0_A Endonuclease PI-MTUI; h  49.5     9.3 0.00032   23.4   2.0   16   76-91     81-96  (139)
 26 2j58_A WZA, outer membrane lip  49.5     9.9 0.00034   27.5   2.4   29   62-92    191-231 (359)
 27 3bbn_D Ribosomal protein S4; s  46.6     6.7 0.00023   26.4   1.0   24   66-91    116-139 (201)
 28 2z1c_A Hydrogenase expression/  46.4      38  0.0013   19.1   4.9   28   62-91     15-45  (75)
 29 1c05_A Ribosomal protein S4 de  45.5      13 0.00044   23.8   2.2   37   49-91     65-101 (159)
 30 2vqe_D 30S ribosomal protein S  45.0      11 0.00039   25.2   2.0   24   66-91    126-149 (209)
 31 3ie4_A GRAM-negative binding p  44.2      20  0.0007   21.6   2.9   23   68-91     55-77  (107)
 32 1mi8_A DNAB intein; all beta-s  42.7      13 0.00046   23.1   2.0   16   76-91     83-98  (158)
 33 1am2_A MXE GYRA intein; protei  42.2      16 0.00056   23.9   2.4   17   75-91     91-107 (199)
 34 2kl0_A Putative thiamin biosyn  41.9      36  0.0012   18.7   3.6   31   59-91     26-59  (73)
 35 3ne0_A Resuscitation promoting  41.8      13 0.00043   25.2   1.8   17   75-91    152-168 (214)
 36 3pbi_A Invasion protein; pepti  41.4      12  0.0004   25.3   1.6   17   75-91    152-168 (214)
 37 2kha_A Beta-1,3-glucan-binding  40.4      27 0.00092   21.8   3.1   23   68-91     65-87  (130)
 38 3iuw_A Activating signal coint  39.2      44  0.0015   19.3   3.7   13   80-92     36-48  (83)
 39 3rpf_C Molybdopterin convertin  39.1      46  0.0016   17.9   4.5   29   62-92     41-69  (74)
 40 1dq3_A Endonuclease; PI-PFUI,   38.4      39  0.0013   24.8   4.2   20   69-90    107-126 (454)
 41 1ryj_A Unknown; beta/alpha pro  36.9      50  0.0017   17.7   4.5   31   59-92     35-65  (70)
 42 1dm9_A Hypothetical 15.5 KD pr  36.5      20 0.00068   22.2   2.0   36   49-91     23-58  (133)
 43 4hpe_A Putative cell WALL hydr  36.1      18 0.00063   25.5   2.0   17   75-91    242-258 (308)
 44 2hbw_A NLP/P60 protein; NLP/P6  35.8      19 0.00066   24.5   2.0   17   75-91    154-170 (235)
 45 4fdy_A Similar to lipoprotein,  35.4      24 0.00081   25.1   2.5   17   75-91    246-262 (313)
 46 1tyg_B YJBS; alpha beta barrel  35.0      65  0.0022   18.4   4.3   32   59-92     48-82  (87)
 47 3zvk_E VAPB2, antitoxin of tox  35.0      45  0.0015   18.8   3.2   29   63-91      3-31  (78)
 48 2k6p_A Uncharacterized protein  33.9      19 0.00066   20.4   1.5   23   66-91     28-50  (92)
 49 2exd_A NFED short homolog; mem  33.7      57  0.0019   18.3   3.6   29   63-92     30-58  (80)
 50 2imz_A Endonuclease PI-MTUI; N  33.1      16 0.00055   22.9   1.2   15   76-90     81-95  (168)
 51 3d0f_A Penicillin-binding 1 tr  32.2      14 0.00047   21.8   0.7   10   82-91     84-93  (106)
 52 3kw0_A Cysteine peptidase; str  30.3      29   0.001   23.1   2.2   14   79-92     37-50  (214)
 53 1f0z_A THis protein; ubiquitin  30.1      65  0.0022   16.9   3.7   32   59-92     27-61  (66)
 54 2cu3_A Unknown function protei  30.0      64  0.0022   16.8   5.1   32   59-92     25-59  (64)
 55 1qd7_I S17 ribosomal protein;   29.7      34  0.0011   20.0   2.1   15   78-92     46-60  (89)
 56 3r8n_Q 30S ribosomal protein S  29.3      28 0.00096   19.9   1.7   15   78-92     46-60  (80)
 57 3i4o_A Translation initiation   28.5      34  0.0012   19.5   1.9   12   81-92     53-64  (79)
 58 1p9k_A ORF, hypothetical prote  27.7      18 0.00062   20.0   0.7   24   66-91     48-71  (79)
 59 2wg5_A General control protein  27.2      34  0.0011   20.5   1.9   16   77-92     70-85  (109)
 60 3h43_A Proteasome-activating n  27.0      20  0.0007   20.6   0.8   15   77-91     51-65  (85)
 61 1vct_A Hypothetical protein PH  26.8      68  0.0023   20.8   3.5   25   65-91    154-180 (205)
 62 3r8n_D 30S ribosomal protein S  25.1     5.4 0.00019   26.9  -2.2   37   49-91    109-145 (205)
 63 3h41_A NLP/P60 family protein;  24.6      38  0.0013   23.7   2.0   17   75-91    243-259 (311)
 64 1gpp_A Endonuclease PI-SCEI; h  23.9      48  0.0016   22.9   2.3   22   64-89     16-38  (237)
 65 2vqe_Q 30S ribosomal protein S  22.9      52  0.0018   19.8   2.1   15   78-92     47-61  (105)
 66 2b0a_A Hypothetical protein MJ  22.8      46  0.0016   21.6   2.0   16   77-92     76-91  (186)
 67 1vjk_A Molybdopterin convertin  22.7   1E+02  0.0035   17.5   3.4   28   62-92     66-93  (98)
 68 3l4b_C TRKA K+ channel protien  22.2      44  0.0015   21.4   1.9   24   65-91    177-202 (218)
 69 2vl6_A SSO MCM N-TER, minichro  22.2      72  0.0025   21.6   3.0   14   79-92    222-235 (268)
 70 3d3r_A Hydrogenase assembly ch  21.9 1.4E+02  0.0047   17.9   5.2   28   62-91     38-69  (103)
 71 1ltl_A DNA replication initiat  21.5      76  0.0026   21.7   3.1   14   79-92    209-222 (279)
 72 1rws_A Hypothetical protein PF  20.5      34  0.0012   18.8   0.9   28   61-91     44-71  (77)
 73 1o9y_A HRCQ2; secretory protei  20.4      52  0.0018   18.5   1.7   17   75-91     26-45  (84)
 74 1hr0_W Translation initiation   20.0      58   0.002   17.7   1.8   11   81-91     46-56  (71)

No 1  
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.60  E-value=1.6e-15  Score=123.02  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHhhc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMST-------EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~~-------~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      ++|+++++++++..       +....-+|.++++|++++++++++++|||+|+++++++|+++.|++++|+|||+  .++
T Consensus       112 ~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~--~~~  189 (1034)
T 3ixz_A          112 CLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGD--KFQ  189 (1034)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEE
Confidence            56777888887632       111223578899999999999999999999999999999999999999999999  899


Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ||++||+|||+|.+++
T Consensus       190 I~~~eLv~GDiV~l~~  205 (1034)
T 3ixz_A          190 INADQLVVGDLVEMKG  205 (1034)
T ss_pred             EEHHHCCCCcEEEEcC
Confidence            9999999999999874


No 2  
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.57  E-value=4.7e-15  Score=119.57  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      ++|+++++++++.++      |.++++|+++++++++++++||+|+++++++|+++.|++++|+|||+  .+++|++||+
T Consensus       126 ~ll~~aai~s~~~g~------~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~--~~~I~~~eLv  197 (920)
T 1mhs_A          126 FVMEGAAVLAAGLED------WVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVV  197 (920)
T ss_dssp             HHHHHHHHHCTTCSC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSS--EEECCTTTSC
T ss_pred             HHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCE--EEEEEHHHcC
Confidence            577788888888877      77888899999999999999999999999999999999999999999  8999999999


Q ss_pred             CCCEEEEee
Q psy6019          84 PGDIVEVSE   92 (93)
Q Consensus        84 ~GDiv~v~~   92 (93)
                      |||+|.+++
T Consensus       198 ~GDiV~l~~  206 (920)
T 1mhs_A          198 PGDILQVEE  206 (920)
T ss_dssp             TTSEEEECT
T ss_pred             CCCEEEeCC
Confidence            999999874


No 3  
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.55  E-value=9.8e-15  Score=118.46  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      ++|++++++|++...       +....+|.++++|+++++++++++++||+|+++++++|+++.|++++|+|||+  .++
T Consensus       107 ~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~--~~~  184 (1028)
T 2zxe_A          107 ILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGE--KST  184 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTE--EEE
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCE--EEE
Confidence            578888999987421       11123578899999999999999999999999999999999999999999999  899


Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ||++||+|||+|.+++
T Consensus       185 I~~~~Lv~GDiV~l~~  200 (1028)
T 2zxe_A          185 INAEFVVAGDLVEVKG  200 (1028)
T ss_dssp             EEGGGCCTTCEEEEET
T ss_pred             EEHHHCCcCCEEEECC
Confidence            9999999999999974


No 4  
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.48  E-value=1.1e-13  Score=111.97  Aligned_cols=88  Identities=44%  Similarity=0.559  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHhhc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCc-cceEEEe
Q psy6019           4 LSLVGCYNMSAMST----EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDK-SGVQKVR   78 (93)
Q Consensus         4 ~~L~~~~~~s~~~~----~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~-~~~~~i~   78 (93)
                      ++|++++++|++..    +++....|.++++|++++++++.+++|||+|+++++++|+++.|++++|+|||+ | .+++|
T Consensus        64 ~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~-~~~I~  142 (995)
T 3ar4_A           64 RILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS-VQRIK  142 (995)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSS-CEEEE
T ss_pred             HHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCce-EEEEE
Confidence            46778888887742    111233577899999999999999999999999999999999999999999875 1 38999


Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      ++||+|||+|.+++
T Consensus       143 ~~~lv~GDiV~l~~  156 (995)
T 3ar4_A          143 ARDIVPGDIVEVAV  156 (995)
T ss_dssp             GGGCCTTCEEEEET
T ss_pred             HHHCCCCCEEEECC
Confidence            99999999999974


No 5  
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.40  E-value=4.9e-15  Score=119.00  Aligned_cols=87  Identities=21%  Similarity=0.152  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHhhcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019           4 LSLVGCYNMSAMSTE-QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI   82 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el   82 (93)
                      ++|++++++|++.+. .+.+.+|.++++|+++++++..++++||+|+++++++|.++.|++++|+|||+  .+++|++||
T Consensus        71 ~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~--~~~I~~~~L  148 (885)
T 3b8c_A           71 WVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAIL  148 (885)
T ss_dssp             SHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSC--SCCCCTTTT
T ss_pred             HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCE--EEEEEHHHC
Confidence            578889999988641 11222478888999999999999999999999999999999999999999999  799999999


Q ss_pred             CCCCEEEEee
Q psy6019          83 VPGDIVEVSE   92 (93)
Q Consensus        83 v~GDiv~v~~   92 (93)
                      +|||+|.+++
T Consensus       149 v~GDiV~l~~  158 (885)
T 3b8c_A          149 VPGDIVSIKL  158 (885)
T ss_dssp             CTTSBCCCCS
T ss_pred             CCCCEEEECC
Confidence            9999998864


No 6  
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.16  E-value=1.9e-11  Score=95.23  Aligned_cols=67  Identities=25%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ||+++++++.+++++..++.+.+.|+++++++|.++.|++++|+|||+  ++++|++|++|||+|.+++
T Consensus        95 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~  161 (645)
T 3j08_A           95 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP  161 (645)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            577788888888877777777777888899999999999999999999  8999999999999999975


No 7  
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.16  E-value=3.3e-11  Score=94.90  Aligned_cols=67  Identities=25%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ||+++++++.+++++..++.+.+.|+++++++|.++.|++++|+|||+  ++++|++|++|||+|.+++
T Consensus       173 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~  239 (723)
T 3j09_A          173 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP  239 (723)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            677788888888877777777777888899999999999999999999  8999999999999999975


No 8  
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.15  E-value=7e-11  Score=93.49  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe-CCccceEEEeCCCCCCCCEEEEee
Q psy6019          22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir-~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.||+.+.+|+++++++.+++.+.+.|+.+++++|.++.|++++++| ||+  ++++|+++|+|||+|.+++
T Consensus       185 ~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~--~~~v~~~~l~~GDiv~v~~  254 (736)
T 3rfu_A          185 AVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGS--EEEVSLDNVAVGDLLRVRP  254 (736)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEE--EEEEETTTCCTTCEECCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCE--EEEEEHhhCCCCCEEEECC
Confidence            56788888888999988888888888999999999999999999998 888  8999999999999999875


No 9  
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=98.82  E-value=3.1e-09  Score=67.66  Aligned_cols=47  Identities=17%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             HHhHHHHHHHHhccCCCeeEEEeCCccc----eEEEeCCCCCCCCEEEEee
Q psy6019          46 ERNAESAIEALKEYEPEMGKVIRGDKSG----VQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        46 e~~a~~~~~~L~~l~~~~a~Vir~g~~~----~~~i~~~elv~GDiv~v~~   92 (93)
                      |+|+.+++++|.++.|++++|+|+|+.+    .+++|+++|+|||+|.+++
T Consensus         2 ~~ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~   52 (124)
T 2kij_A            2 SFTMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVP   52 (124)
T ss_dssp             ----CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCT
T ss_pred             hHHHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECC
Confidence            5788999999999999999999976421    4789999999999999874


No 10 
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=98.78  E-value=5.1e-09  Score=65.72  Aligned_cols=39  Identities=36%  Similarity=0.419  Sum_probs=36.4

Q ss_pred             HHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          52 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        52 ~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ++++|.++.|++++++|||+  .+++++++|+|||++.+++
T Consensus         2 al~~L~~l~p~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~   40 (113)
T 2hc8_A            2 AIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP   40 (113)
T ss_dssp             HHHHHHHHSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHhcCCCCEEEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            67889999999999999999  8999999999999999975


No 11 
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5
Probab=92.46  E-value=0.00031  Score=47.97  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC
Q psy6019          36 AYFALTEYQKERNAESAIEALKEYEPEMGKVIRG   69 (93)
Q Consensus        36 ~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~   69 (93)
                      +++++++++||+++++.++++++|.|..|+|+|.
T Consensus       221 ~i~~~~~~~q~~~~~~~~~~~~~~~p~~~~v~~~  254 (254)
T 1bg5_A          221 LVPRGSSYYQEAKSSKIMESFKNMVPQQALVNSS  254 (254)
T ss_dssp             CCSCCCTTTTCSSSCSCCSSSCCCCCCCCCCSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCCceEEecC
Confidence            3567889999999999999999999999999984


No 12 
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=84.01  E-value=1.5  Score=28.64  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=19.1

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +.++|+  ..++++++|.+||.|.+.
T Consensus       107 v~~~g~--~~w~~A~eLk~GD~v~~~  130 (186)
T 2jmz_A          107 ISKTGE--VLEINAEMVKVGDYIYIP  130 (186)
T ss_dssp             EEETTE--EEEEEGGGCCTTSEEEEE
T ss_pred             EeCCCe--EEEEEhhcCCCCCEEEec
Confidence            334566  789999999999999764


No 13 
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=83.69  E-value=1.5  Score=28.65  Aligned_cols=30  Identities=30%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             CCCee-EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          60 EPEMG-KVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        60 ~~~~a-~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      .|++- -+.++|+  ..++++++|.+||.|.+.
T Consensus        90 T~~H~~~v~~~g~--~~~~~A~eLk~GD~v~v~  120 (185)
T 2lcj_A           90 TVDHPVLVYENGR--FIEKRAFEVKEGDKVLVS  120 (185)
T ss_dssp             CSSSEEEEEETTE--EEEEEGGGCCTTCEEEEC
T ss_pred             CCCCEEEEecCCe--EEEEEHHHCCCCCEEEEc
Confidence            44432 3445666  789999999999999864


No 14 
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=67.97  E-value=2.6  Score=26.56  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=14.7

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.++++|||+|..+
T Consensus        61 ~~V~~~~l~pGDLvFf~   77 (135)
T 2k1g_A           61 KSVSRSNLRTGDLVLFR   77 (135)
T ss_dssp             EEECGGGCCTTEEEEEE
T ss_pred             cEecHHHccCCcEEEEC
Confidence            57788999999999875


No 15 
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=66.95  E-value=4.5  Score=22.73  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             ccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          58 EYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        58 ~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .+.++.+-|.+||+  .  +|.+++..||.+.+-.
T Consensus        31 gl~~~~VvV~vNG~--~--v~~d~~l~GD~VeIv~   61 (74)
T 2l32_A           31 DLSPHEVTVLVDGR--P--VPEDQSVEVDRVKVLR   61 (74)
T ss_dssp             CCCSSCCCEECCCC--C--CCTTSSSCCCCEEECS
T ss_pred             CCCcceEEEEECCE--E--CCHHHCCCCCEEEEEE
Confidence            45567787888887  3  4666788899998743


No 16 
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=66.21  E-value=3.8  Score=25.79  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=17.6

Q ss_pred             CeeEEEe-CCccceEEEeCCCCCCCCEEEE
Q psy6019          62 EMGKVIR-GDKSGVQKVRAKEIVPGDIVEV   90 (93)
Q Consensus        62 ~~a~Vir-~g~~~~~~i~~~elv~GDiv~v   90 (93)
                      ..++|.- +|.    +.+.+||.+||.|.-
T Consensus         4 ~~t~V~~~~G~----~k~i~eL~~GD~Vla   29 (145)
T 1at0_A            4 PESTALLESGV----RKPLGELSIGDRVLS   29 (145)
T ss_dssp             TTCEEEBTTSC----EEEGGGCCTTCEEEE
T ss_pred             cCCEEEeCCCC----EeEHHHcCCCCEEEE
Confidence            3455664 455    367899999999874


No 17 
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=65.62  E-value=8.1  Score=29.29  Aligned_cols=23  Identities=35%  Similarity=0.687  Sum_probs=19.5

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEE
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEV   90 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v   90 (93)
                      +.++|+  ..++++++|.+||.|.+
T Consensus       100 ~~~~g~--~~~~~a~elk~GD~v~~  122 (537)
T 2cw8_A          100 SVRNGE--LVEVTGDELKPGDLVAV  122 (537)
T ss_dssp             EEETTE--EEEEETTTCCTTCEEEE
T ss_pred             EEECCE--EEEEEhhcCCCCCEEEE
Confidence            345677  88999999999999976


No 18 
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=64.34  E-value=6.9  Score=26.75  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=21.3

Q ss_pred             CCeeEEEe-CCccceEEEeC-------CCCCCCCEEEEe
Q psy6019          61 PEMGKVIR-GDKSGVQKVRA-------KEIVPGDIVEVS   91 (93)
Q Consensus        61 ~~~a~Vir-~g~~~~~~i~~-------~elv~GDiv~v~   91 (93)
                      .+.+.|++ ||.  ....+.       .++.|||.|.|-
T Consensus       165 ~~~v~VI~~nG~--v~~~~~a~Wn~~~~~l~PG~~I~Vp  201 (236)
T 3p42_A          165 KNNVMVITPEGE--TVVAPVALWNKRHVEPPPGSQLWLG  201 (236)
T ss_dssp             SSEEEEECTTSC--EEEEECSSTTCCCEECCTTCEEEEC
T ss_pred             CccEEEEeCCCC--EEeccccccccCCCCCCCCCEEEEe
Confidence            44678887 677  666653       379999999874


No 19 
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=62.81  E-value=5.4  Score=25.05  Aligned_cols=18  Identities=28%  Similarity=0.124  Sum_probs=16.0

Q ss_pred             eEEEeCCCCCCCCEEEEe
Q psy6019          74 VQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        74 ~~~i~~~elv~GDiv~v~   91 (93)
                      ...+.+++|++||.|.+.
T Consensus        84 ~~~v~A~~l~~GD~v~~~  101 (145)
T 1at0_A           84 LTFVFADRIEEKNQVLVR  101 (145)
T ss_dssp             EEEEEGGGCCTTCEEEEE
T ss_pred             EEEEEHHHCcCCCEEEEe
Confidence            578999999999999864


No 20 
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=60.36  E-value=5.1  Score=24.88  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=14.4

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.++++|||++..+
T Consensus        61 ~~v~~~~l~pGDLvff~   77 (136)
T 2jyx_A           61 KSVSRSNLRTGDLVLFR   77 (136)
T ss_dssp             EECCTTTCCTTEEEEEE
T ss_pred             eEcchHhCCCCCEEEEC
Confidence            56788899999999875


No 21 
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=53.64  E-value=9.1  Score=21.16  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=16.0

Q ss_pred             EEEeCCccceEEEeCC--CCCCCCEEEEe
Q psy6019          65 KVIRGDKSGVQKVRAK--EIVPGDIVEVS   91 (93)
Q Consensus        65 ~Vir~g~~~~~~i~~~--elv~GDiv~v~   91 (93)
                      .+.|+|+  .. +|..  .+.+||++.+-
T Consensus        45 ~I~R~~~--~~-~p~~~~~l~~GD~l~v~   70 (86)
T 3jxo_A           45 AIVRGGV--LV-VPRGDTEILSGDKLYVI   70 (86)
T ss_dssp             EEEETTE--EE-CCCTTCBCCTTCEEEEE
T ss_pred             EEEECCE--EE-CCCCCCEECCCCEEEEE
Confidence            4457776  33 4544  58899999874


No 22 
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=53.17  E-value=22  Score=22.57  Aligned_cols=17  Identities=47%  Similarity=0.548  Sum_probs=14.9

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      .++++++|.+||.+.+.
T Consensus       107 ~w~~a~~L~~Gd~l~~~  123 (168)
T 4e2u_A          107 QWVPAAEVKPGDVVVGV  123 (168)
T ss_dssp             EEEEGGGCCTTCEEEEE
T ss_pred             EEEEHHHCCCCCEEEec
Confidence            78899999999998763


No 23 
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=51.42  E-value=7.1  Score=24.37  Aligned_cols=17  Identities=24%  Similarity=0.384  Sum_probs=14.2

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.+++.|||++..+
T Consensus        83 ~~v~~~~~~pGDlvff~   99 (142)
T 3gt2_A           83 QKILPQQARKGDLIFYG   99 (142)
T ss_dssp             EEECGGGCCTTCEEEES
T ss_pred             ceechhhCCCCCEEEeC
Confidence            56778899999999864


No 24 
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=49.82  E-value=15  Score=22.08  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=17.2

Q ss_pred             eCCccceEEEeCCCCCCCCEEEEe
Q psy6019          68 RGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        68 r~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      ++|+| .-+=+--.|++||+|...
T Consensus        56 ~~GrW-~~~d~~~~lk~GD~i~Yw   78 (106)
T 3aqy_A           56 KEGRW-TFRDRNVKLKLGDKIYFW   78 (106)
T ss_dssp             BTTEE-EEEECSCCCCTTCEEEEE
T ss_pred             cCCEE-EEECCceEeCCCCEEEEE
Confidence            58886 445556699999999764


No 25 
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=49.53  E-value=9.3  Score=23.35  Aligned_cols=16  Identities=38%  Similarity=0.304  Sum_probs=13.7

Q ss_pred             EEeCCCCCCCCEEEEe
Q psy6019          76 KVRAKEIVPGDIVEVS   91 (93)
Q Consensus        76 ~i~~~elv~GDiv~v~   91 (93)
                      ++++++|.|||.+.+.
T Consensus        81 w~~a~~L~~Gd~v~~~   96 (139)
T 2in0_A           81 WRAAGELRKGDRVAVR   96 (139)
T ss_dssp             EEEGGGCCTTCEEEEE
T ss_pred             cEEHHHCCCCCEEEeC
Confidence            5789999999999764


No 26 
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=49.52  E-value=9.9  Score=27.46  Aligned_cols=29  Identities=17%  Similarity=0.186  Sum_probs=21.5

Q ss_pred             CeeEEEeCCccceEEEeC------------CCCCCCCEEEEee
Q psy6019          62 EMGKVIRGDKSGVQKVRA------------KEIVPGDIVEVSE   92 (93)
Q Consensus        62 ~~a~Vir~g~~~~~~i~~------------~elv~GDiv~v~~   92 (93)
                      ..+++.|+|+  ...++.            -.|.+||+|.+.+
T Consensus       191 ~~V~l~R~g~--~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~  231 (359)
T 2j58_A          191 RNVVLTHNGK--DTKISLYALMQKGDLTQNHLLYHGDILFIPS  231 (359)
T ss_dssp             TCEEEEETTE--EEEECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred             ceEEEEECCe--EEEEEHHHHhhcCCcccceeccCCCeEEEee
Confidence            4688899998  666543            3488999999853


No 27 
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=46.63  E-value=6.7  Score=26.39  Aligned_cols=24  Identities=8%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      |.-||+  ....|...+.+||+|.+.
T Consensus       116 V~VNG~--~V~~pS~~V~~gD~I~V~  139 (201)
T 3bbn_D          116 ILVNGR--IVDIPSYRCKPQDTIMAR  139 (201)
T ss_dssp             EEETTE--ECCCTTCBCCTTEEEEEC
T ss_pred             EEeCCE--EEeecceecCCCCEEEEc
Confidence            445888  778899999999999885


No 28 
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=46.44  E-value=38  Score=19.08  Aligned_cols=28  Identities=32%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             CeeEEEeCCccceEEEeC---CCCCCCCEEEEe
Q psy6019          62 EMGKVIRGDKSGVQKVRA---KEIVPGDIVEVS   91 (93)
Q Consensus        62 ~~a~Vir~g~~~~~~i~~---~elv~GDiv~v~   91 (93)
                      ..++|-.+|.  .++++.   .+..+||-|.+.
T Consensus        15 ~~A~vd~~Gv--~r~V~l~Lv~~~~vGD~VLVH   45 (75)
T 2z1c_A           15 PVAVVDFGGV--KREVRLDLMPDTKPGDWVIVH   45 (75)
T ss_dssp             TEEEEEETTE--EEEEECTTSTTCCTTCEEEEE
T ss_pred             CEEEEEcCCE--EEEEEEEEeCCCCCCCEEEEe
Confidence            4577767777  677764   478899999885


No 29 
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=45.46  E-value=13  Score=23.82  Aligned_cols=37  Identities=11%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +.+..++|...  .  +|.-||+  ....|...+.+||.|.+.
T Consensus        65 SR~~ar~lI~~--G--~V~VNG~--~v~~ps~~V~~gD~I~V~  101 (159)
T 1c05_A           65 TRRQARQLVTH--G--HILVDGS--RVNIPSYRVKPGQTIAVR  101 (159)
T ss_dssp             SHHHHHHHHHT--T--CEEETTE--ECCCSSCBCCTTCEEEEC
T ss_pred             CHHHHHHHHHC--C--CEEECCE--EeCcCCcEeCCCCEEEEe
Confidence            44455555432  2  2556888  677788899999999885


No 30 
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=45.03  E-value=11  Score=25.22  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=20.1

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      |.-||+  ....|...+.+||+|.+.
T Consensus       126 V~VNG~--~v~~ps~~V~~gD~I~V~  149 (209)
T 2vqe_D          126 ITVNGR--RVDLPSYRVRPGDEIAVA  149 (209)
T ss_dssp             EEETTE--ECCCTTCBCCTTCEEEEC
T ss_pred             EEECCE--EeCcCCcCcCCCCEEEEc
Confidence            556888  777889999999999885


No 31 
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=44.18  E-value=20  Score=21.60  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=17.0

Q ss_pred             eCCccceEEEeCCCCCCCCEEEEe
Q psy6019          68 RGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        68 r~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      ++|+| .-+=.--+|++||+|...
T Consensus        55 ~~GrW-~~~d~~~~lk~GD~I~Yw   77 (107)
T 3ie4_A           55 KNGRW-TFRDRITALKPGDTLYYW   77 (107)
T ss_dssp             BTTEE-EEEESSCCCCTTCEEEEE
T ss_pred             cCCEE-EEECCCceeCCCCEEEEE
Confidence            57886 444466799999998753


No 32 
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=42.71  E-value=13  Score=23.12  Aligned_cols=16  Identities=13%  Similarity=0.140  Sum_probs=13.7

Q ss_pred             EEeCCCCCCCCEEEEe
Q psy6019          76 KVRAKEIVPGDIVEVS   91 (93)
Q Consensus        76 ~i~~~elv~GDiv~v~   91 (93)
                      ++++++|.|||.|.+.
T Consensus        83 w~~a~~L~~GD~v~~~   98 (158)
T 1mi8_A           83 WKRLDELSLKEHIALP   98 (158)
T ss_dssp             EEEGGGCCTTCEEEEE
T ss_pred             CEEhhhCCCCCEEEec
Confidence            4789999999999864


No 33 
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=42.19  E-value=16  Score=23.90  Aligned_cols=17  Identities=29%  Similarity=0.321  Sum_probs=15.1

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      .++++++|.|||.|.+.
T Consensus        91 ~w~~a~eLk~GD~v~~~  107 (199)
T 1am2_A           91 LWKLIDEIKPGDYAVIQ  107 (199)
T ss_dssp             EEEEGGGCCTTCEEEEE
T ss_pred             eEEEhhHCCCCCEEEEC
Confidence            67899999999999873


No 34 
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=41.95  E-value=36  Score=18.72  Aligned_cols=31  Identities=16%  Similarity=0.076  Sum_probs=22.3

Q ss_pred             cCCCeeEEEeCCccceEEE---eCCCCCCCCEEEEe
Q psy6019          59 YEPEMGKVIRGDKSGVQKV---RAKEIVPGDIVEVS   91 (93)
Q Consensus        59 l~~~~a~Vir~g~~~~~~i---~~~elv~GDiv~v~   91 (93)
                      +.++.+-|-+||.  ...-   +...|..||.|.+-
T Consensus        26 ~~~~~vAV~vNg~--iVpr~~~~~~~L~dGD~veIv   59 (73)
T 2kl0_A           26 CTGGHFAVALNYD--VVPRGKWDETPVTAGDEIEIL   59 (73)
T ss_dssp             CCSSSCEEEESSS--EECHHHHTTCBCCTTCEEEEE
T ss_pred             CCCCcEEEEECCE--ECChHHcCcccCCCCCEEEEE
Confidence            4466666889998  5432   25689999999874


No 35 
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=41.82  E-value=13  Score=25.20  Aligned_cols=17  Identities=18%  Similarity=0.438  Sum_probs=14.3

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.++++|||+|..+
T Consensus       152 ~~V~~~~lqpGDLvFf~  168 (214)
T 3ne0_A          152 RKIPSSQMRRGDVIFYG  168 (214)
T ss_dssp             EEEEGGGCCTTCEEEES
T ss_pred             ceechhhCCCCCEEEec
Confidence            56788999999999864


No 36 
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=41.35  E-value=12  Score=25.31  Aligned_cols=17  Identities=24%  Similarity=0.341  Sum_probs=14.4

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.++++|||+|..+
T Consensus       152 ~~V~~~~lqpGDLVff~  168 (214)
T 3pbi_A          152 RHVPPAEAKRGDLIFYG  168 (214)
T ss_dssp             EEECGGGCCTTCEEEES
T ss_pred             eeechhhCCCCCEEEec
Confidence            56788999999999863


No 37 
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=40.39  E-value=27  Score=21.83  Aligned_cols=23  Identities=13%  Similarity=0.132  Sum_probs=17.0

Q ss_pred             eCCccceEEEeCCCCCCCCEEEEe
Q psy6019          68 RGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        68 r~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +||+| .-+=.--+|++||+|...
T Consensus        65 ~~GrW-~~~d~~~~Lk~GD~IyYw   87 (130)
T 2kha_A           65 KEGRW-TFRDRNAKLKLGDKIYFW   87 (130)
T ss_dssp             SSSEE-EEEETTCCCCTTCEEEEE
T ss_pred             cCCEE-EEECCceeeCCCCEEEEE
Confidence            47886 445556699999999864


No 38 
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=39.16  E-value=44  Score=19.30  Aligned_cols=13  Identities=31%  Similarity=0.547  Sum_probs=10.7

Q ss_pred             CCCCCCCEEEEee
Q psy6019          80 KEIVPGDIVEVSE   92 (93)
Q Consensus        80 ~elv~GDiv~v~~   92 (93)
                      ++..+||++.+.+
T Consensus        36 r~~~vGD~l~l~E   48 (83)
T 3iuw_A           36 RNFQVGDILILEE   48 (83)
T ss_dssp             SCCCTTCEEEEEE
T ss_pred             cCCCCCCEEEEEE
Confidence            3799999999864


No 39 
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.10  E-value=46  Score=17.93  Aligned_cols=29  Identities=10%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             CeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.+.+..||+  ...-....+..||.|.+-+
T Consensus        41 ~~~~vavN~~--~v~~~~~~l~~gDeV~i~P   69 (74)
T 3rpf_C           41 GVCAIALNDH--LIDNLNTPLKDGDVISLLP   69 (74)
T ss_dssp             TTCEEEESSS--EECCTTCCCCTTCEEEEEC
T ss_pred             hccEEEECCE--EcCCCCcCCCCCCEEEEEC
Confidence            4577888888  5333456788999998743


No 40 
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=38.40  E-value=39  Score=24.75  Aligned_cols=20  Identities=35%  Similarity=0.381  Sum_probs=17.2

Q ss_pred             CCccceEEEeCCCCCCCCEEEE
Q psy6019          69 GDKSGVQKVRAKEIVPGDIVEV   90 (93)
Q Consensus        69 ~g~~~~~~i~~~elv~GDiv~v   90 (93)
                      +|+  ..+++++++.+||.+.+
T Consensus       107 ~g~--~~~~~a~~l~~gd~i~~  126 (454)
T 1dq3_A          107 DFK--IVEKRADELKEGDILIG  126 (454)
T ss_dssp             TSC--EEEEETTTCCTTCEECB
T ss_pred             CCc--EEEEEhhhCCCCCEEEe
Confidence            566  78999999999999875


No 41 
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=36.88  E-value=50  Score=17.71  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             cCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          59 YEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        59 l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.++.+.+.+||.  ... +.+.+..||.|.+-+
T Consensus        35 ~~~~~v~vavN~~--~v~-~~~~L~~gD~V~ii~   65 (70)
T 1ryj_A           35 IPIETVVVKKNGQ--IVI-DEEEIFDGDIIEVIR   65 (70)
T ss_dssp             CCTTTEEEEETTE--ECC-TTSBCCTTCEEEEEE
T ss_pred             CCCCCEEEEECCE--ECC-CcccCCCCCEEEEEe
Confidence            3456667888888  432 344899999998753


No 42 
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=36.47  E-value=20  Score=22.17  Aligned_cols=36  Identities=11%  Similarity=0.057  Sum_probs=23.0

Q ss_pred             HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +.+.++.+..  ..  .|.-||+  .. -+...+.+||.|.+.
T Consensus        23 SRs~a~~li~--~G--~V~VNG~--~v-k~s~~V~~GD~I~I~   58 (133)
T 1dm9_A           23 TRALAREMIE--GG--KVHYNGQ--RS-KPSKIVELNATLTLR   58 (133)
T ss_dssp             SHHHHHHHHH--TT--CEEETTE--EC-CTTCBCCTTCEEEEE
T ss_pred             CHHHHHHHHH--CC--cEEECCE--Ec-CCCCEeCCCCEEEEE
Confidence            4445555542  12  3456888  54 577789999999875


No 43 
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=36.06  E-value=18  Score=25.47  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=14.5

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.+++.|||+|..+
T Consensus       242 ~~v~~~~l~pGDLvff~  258 (308)
T 4hpe_A          242 QHLPLSQAKAGDLVFFH  258 (308)
T ss_dssp             EEECGGGCCTTCEEEEE
T ss_pred             eeechhhCCCCCEEEEc
Confidence            56788899999999875


No 44 
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=35.82  E-value=19  Score=24.48  Aligned_cols=17  Identities=35%  Similarity=0.649  Sum_probs=14.2

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      +.++.+++.|||++..+
T Consensus       154 ~~v~~~~l~pGDLvff~  170 (235)
T 2hbw_A          154 QAITIDELAPGDLVFFG  170 (235)
T ss_dssp             EEECGGGCCTTCEEEEE
T ss_pred             ccccHhhCCCCCEEEEC
Confidence            46778899999999875


No 45 
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=35.40  E-value=24  Score=25.14  Aligned_cols=17  Identities=24%  Similarity=0.434  Sum_probs=14.5

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.+++.|||+|..+
T Consensus       246 ~~V~~~~lqpGDLvff~  262 (313)
T 4fdy_A          246 QEISMEEAQAGDLIFFH  262 (313)
T ss_dssp             EEECTTTCCTTCEEEES
T ss_pred             ceechhhCCCCCEEEEe
Confidence            56788999999999875


No 46 
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=35.04  E-value=65  Score=18.44  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             cCCCeeEEEeCCccceEEEe---CCCCCCCCEEEEee
Q psy6019          59 YEPEMGKVIRGDKSGVQKVR---AKEIVPGDIVEVSE   92 (93)
Q Consensus        59 l~~~~a~Vir~g~~~~~~i~---~~elv~GDiv~v~~   92 (93)
                      +.++.+.|-+||+  ...-.   ...|..||.|.+-+
T Consensus        48 ~~~~~vaVavNg~--iV~~~~~~~~~L~dGD~Vei~~   82 (87)
T 1tyg_B           48 LENKIVIVERNKE--IIGKERYHEVELCDRDVIEIVH   82 (87)
T ss_dssp             CTTSCCEEEETTE--EECGGGTTTSBCCSSSEEEEEE
T ss_pred             CCCCCEEEEECCE--ECChhhcCCcCCCCCCEEEEEc
Confidence            4456677888888  54322   35799999998743


No 47 
>3zvk_E VAPB2, antitoxin of toxin-antitoxin system VAPB; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=35.03  E-value=45  Score=18.79  Aligned_cols=29  Identities=14%  Similarity=0.058  Sum_probs=21.2

Q ss_pred             eeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          63 MGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        63 ~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      ++++.++|+.+-.++|.+=.-+||.|.++
T Consensus         3 ~~kvfk~GnSqAVRLPk~~~~~g~eV~I~   31 (78)
T 3zvk_E            3 KAKIFMNGQSQAVRLPKEFRFSVKEVSVI   31 (78)
T ss_dssp             EEEEEEETTEEEEEECGGGCCSSSEEEEE
T ss_pred             eEEEEEECCeeeEECCHHHcCCCCEEEEE
Confidence            67888887644677888766678877765


No 48 
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=33.86  E-value=19  Score=20.36  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=16.6

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      |.-||+  .. -+...+.+||.|.+.
T Consensus        28 V~VNg~--~~-~~~~~v~~gd~I~v~   50 (92)
T 2k6p_A           28 VWLNGS--CA-KASKEVKAGDTISLH   50 (92)
T ss_dssp             CEETTE--EC-CTTCBCCTTCEEEEC
T ss_pred             EEECCE--Ec-CCCCCcCCCCEEEEE
Confidence            445777  44 567789999998874


No 49 
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=33.69  E-value=57  Score=18.33  Aligned_cols=29  Identities=17%  Similarity=0.026  Sum_probs=19.0

Q ss_pred             eeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          63 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        63 ~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .-+|.-+|.. +.-.+.+.+.+|+.|.+-.
T Consensus        30 ~G~V~i~Ge~-W~A~s~~~i~~G~~V~Vv~   58 (80)
T 2exd_A           30 HYLVEVEGDK-WIAYSDEKLSLGDRVMVVD   58 (80)
T ss_dssp             CEEEEETTEE-EEECCSSCCCTTCEEEEEE
T ss_pred             CEEEEECCEE-EEEEECCccCCCCEEEEEE
Confidence            4455555652 3444557899999998854


No 50 
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=33.14  E-value=16  Score=22.90  Aligned_cols=15  Identities=33%  Similarity=0.220  Sum_probs=13.0

Q ss_pred             EEeCCCCCCCCEEEE
Q psy6019          76 KVRAKEIVPGDIVEV   90 (93)
Q Consensus        76 ~i~~~elv~GDiv~v   90 (93)
                      +.++++|.+||.|.+
T Consensus        81 w~~a~~L~~Gd~v~~   95 (168)
T 2imz_A           81 WRAAGELRKGDRVAQ   95 (168)
T ss_dssp             EEEGGGCCTTCEEEC
T ss_pred             CEEHHHCCCCCEEEE
Confidence            578999999999875


No 51 
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=32.15  E-value=14  Score=21.76  Aligned_cols=10  Identities=40%  Similarity=0.856  Sum_probs=9.0

Q ss_pred             CCCCCEEEEe
Q psy6019          82 IVPGDIVEVS   91 (93)
Q Consensus        82 lv~GDiv~v~   91 (93)
                      +.+||+|.++
T Consensus        84 l~~GdvI~V~   93 (106)
T 3d0f_A           84 IRPGALIRVK   93 (106)
T ss_dssp             CCTTEEEEEE
T ss_pred             CCCCCEEEEE
Confidence            8899999986


No 52 
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=30.34  E-value=29  Score=23.09  Aligned_cols=14  Identities=29%  Similarity=0.318  Sum_probs=11.6

Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      .+++.+||++..+.
T Consensus        37 ~~~l~~GDlif~~~   50 (214)
T 3kw0_A           37 INVLKTGDIFLCSG   50 (214)
T ss_dssp             TTTCCTTCEEEEEE
T ss_pred             HhhCCCCCEEEEeC
Confidence            46999999999863


No 53 
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=30.11  E-value=65  Score=16.91  Aligned_cols=32  Identities=6%  Similarity=0.053  Sum_probs=22.1

Q ss_pred             cCCCeeEEEeCCccceEEEe---CCCCCCCCEEEEee
Q psy6019          59 YEPEMGKVIRGDKSGVQKVR---AKEIVPGDIVEVSE   92 (93)
Q Consensus        59 l~~~~a~Vir~g~~~~~~i~---~~elv~GDiv~v~~   92 (93)
                      ..++.+.|-.||+  ...-.   ...+..||.|.+-+
T Consensus        27 ~~~~~v~vavN~~--~v~~~~~~~~~L~~gD~v~i~~   61 (66)
T 1f0z_A           27 QRQAGAALAINQQ--IVPREQWAQHIVQDGDQILLFQ   61 (66)
T ss_dssp             CCCSSEEEEETTE--EECHHHHTTCCCCTTEEECEEE
T ss_pred             CCCCCEEEEECCE--ECCchhcCCcCCCCCCEEEEEe
Confidence            4466677888888  44321   46899999997743


No 54 
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=29.99  E-value=64  Score=16.85  Aligned_cols=32  Identities=22%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             cCCCeeEEEeCCccceEEEe---CCCCCCCCEEEEee
Q psy6019          59 YEPEMGKVIRGDKSGVQKVR---AKEIVPGDIVEVSE   92 (93)
Q Consensus        59 l~~~~a~Vir~g~~~~~~i~---~~elv~GDiv~v~~   92 (93)
                      ..++.+.+.+||+  ...-.   ...+..||.|.+-+
T Consensus        25 ~~~~~v~vavN~~--~v~~~~~~~~~L~dgD~v~i~~   59 (64)
T 2cu3_A           25 VELKGVAVLLNEE--AFLGLEVPDRPLRDGDVVEVVA   59 (64)
T ss_dssp             BCGGGEEEEETTE--EEEGGGCCCCCCCTTCEEEEEE
T ss_pred             CCCCcEEEEECCE--ECCccccCCcCCCCCCEEEEEe
Confidence            4456677888888  54422   35799999998743


No 55 
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=29.71  E-value=34  Score=20.03  Aligned_cols=15  Identities=40%  Similarity=0.554  Sum_probs=12.3

Q ss_pred             eCCCCCCCCEEEEee
Q psy6019          78 RAKEIVPGDIVEVSE   92 (93)
Q Consensus        78 ~~~elv~GDiv~v~~   92 (93)
                      |..+..+||+|.+.+
T Consensus        46 e~n~~k~GD~V~I~E   60 (89)
T 1qd7_I           46 EHNEAKVGDIVKIME   60 (89)
T ss_pred             CccCCCCCCEEEEEE
Confidence            455899999999875


No 56 
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=29.33  E-value=28  Score=19.91  Aligned_cols=15  Identities=40%  Similarity=0.565  Sum_probs=12.2

Q ss_pred             eCCCCCCCCEEEEee
Q psy6019          78 RAKEIVPGDIVEVSE   92 (93)
Q Consensus        78 ~~~elv~GDiv~v~~   92 (93)
                      |..+..+||+|.+.+
T Consensus        46 e~n~~~~GD~V~I~e   60 (80)
T 3r8n_Q           46 ENNECGIGDVVEIRE   60 (80)
T ss_dssp             GGGCCCTTCEEEEEE
T ss_pred             CCCCCCCCCEEEEEE
Confidence            456899999999864


No 57 
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=28.45  E-value=34  Score=19.52  Aligned_cols=12  Identities=42%  Similarity=0.490  Sum_probs=9.6

Q ss_pred             CCCCCCEEEEee
Q psy6019          81 EIVPGDIVEVSE   92 (93)
Q Consensus        81 elv~GDiv~v~~   92 (93)
                      -+.|||+|.+..
T Consensus        53 ~Il~GD~V~ve~   64 (79)
T 3i4o_A           53 RILPEDRVVVEL   64 (79)
T ss_dssp             CCCTTCEEEEEE
T ss_pred             cCCCCCEEEEEE
Confidence            488999998753


No 58 
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=27.68  E-value=18  Score=19.99  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=17.1

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      |.-||+  ...-+...+.+||.|.+.
T Consensus        48 V~VNG~--~v~~~~~~v~~gd~I~v~   71 (79)
T 1p9k_A           48 VKVDGA--VETRKRCKIVAGQTVSFA   71 (79)
T ss_dssp             HEETTB--CCCCSSCCCCSSEEEEET
T ss_pred             EEECCE--EecCCCCCCCCCCEEEEC
Confidence            334777  555667788899988773


No 59 
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.22  E-value=34  Score=20.46  Aligned_cols=16  Identities=25%  Similarity=0.596  Sum_probs=13.2

Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ++.++|.||+.|.+..
T Consensus        70 Vd~~~LkpG~rVaLn~   85 (109)
T 2wg5_A           70 INEEELKPGARVALNQ   85 (109)
T ss_dssp             SCTTTCCTTCEEEEET
T ss_pred             cCHHHCCCCCEEEECC
Confidence            5678999999998863


No 60 
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=27.00  E-value=20  Score=20.58  Aligned_cols=15  Identities=27%  Similarity=0.567  Sum_probs=12.1

Q ss_pred             EeCCCCCCCCEEEEe
Q psy6019          77 VRAKEIVPGDIVEVS   91 (93)
Q Consensus        77 i~~~elv~GDiv~v~   91 (93)
                      ++.+++.||+.|.+.
T Consensus        51 Vd~~~LkpG~rVaLn   65 (85)
T 3h43_A           51 VNPDDLAPGKRVCLN   65 (85)
T ss_dssp             SCGGGCCTTCEEEEC
T ss_pred             cCHHHCCCCCEEEEC
Confidence            345789999999885


No 61 
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=26.84  E-value=68  Score=20.85  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=16.5

Q ss_pred             EEEeCCccceEEEe--CCCCCCCCEEEEe
Q psy6019          65 KVIRGDKSGVQKVR--AKEIVPGDIVEVS   91 (93)
Q Consensus        65 ~Vir~g~~~~~~i~--~~elv~GDiv~v~   91 (93)
                      -+.|+|+  ....|  -..+.+||++.+-
T Consensus       154 aI~R~g~--~i~~P~~dt~L~~GD~Liv~  180 (205)
T 1vct_A          154 AVRRGKR--WIFGPNENFKIRAGDVLIGR  180 (205)
T ss_dssp             EEEETTE--EEESCCTTCBCCTTCEEEEE
T ss_pred             EEEECCE--EEeCCCCCCEECCCCEEEEE
Confidence            4457776  44334  4478899999874


No 62 
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=25.12  E-value=5.4  Score=26.95  Aligned_cols=37  Identities=14%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             HHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          49 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        49 a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +.+..+.|.+.    -+|.-||+  ....|...+.+||+|.+.
T Consensus       109 SR~~ArqLI~~----G~V~VNG~--~V~~ps~~Vk~GD~I~V~  145 (205)
T 3r8n_D          109 TRAEARQLVSH----KAIMVNGR--VVNIASYQVSPNDVVSIR  145 (205)
T ss_dssp             SHHHHHHHHHT----TCCBSSSS--BCCCTTCBCCTTBCCBCC
T ss_pred             HHHHHHHHHHC----CCEEECCE--EEccCCcCcCCCCEEEec
Confidence            34444555332    23456888  778899999999998774


No 63 
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=24.56  E-value=38  Score=23.66  Aligned_cols=17  Identities=18%  Similarity=0.346  Sum_probs=14.1

Q ss_pred             EEEeCCCCCCCCEEEEe
Q psy6019          75 QKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~   91 (93)
                      ..++.+++.|||++...
T Consensus       243 ~~v~~~~~~pGDlvff~  259 (311)
T 3h41_A          243 VAVDKEHLQKGDLIFFA  259 (311)
T ss_dssp             EEECGGGCCTTCEEEEE
T ss_pred             EEEcHHHCCCCCEEEEe
Confidence            56678899999999874


No 64 
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=23.91  E-value=48  Score=22.89  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=15.9

Q ss_pred             eEEEe-CCccceEEEeCCCCCCCCEEE
Q psy6019          64 GKVIR-GDKSGVQKVRAKEIVPGDIVE   89 (93)
Q Consensus        64 a~Vir-~g~~~~~~i~~~elv~GDiv~   89 (93)
                      ..|+. ||.    ..+.++|.+||.|.
T Consensus        16 T~VLMADGS----~K~IEdI~vGD~Vm   38 (237)
T 1gpp_A           16 TNVLMADGS----IECIENIEVGNKVM   38 (237)
T ss_dssp             CEEEBTTSC----EEEGGGCCTTCEEE
T ss_pred             CEEEEeCCC----cceeeecccCCEEe
Confidence            44555 565    44688999999986


No 65 
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=22.93  E-value=52  Score=19.81  Aligned_cols=15  Identities=33%  Similarity=0.514  Sum_probs=12.2

Q ss_pred             eCCCCCCCCEEEEee
Q psy6019          78 RAKEIVPGDIVEVSE   92 (93)
Q Consensus        78 ~~~elv~GDiv~v~~   92 (93)
                      |..+..+||+|.+.+
T Consensus        47 e~n~~k~GD~V~I~E   61 (105)
T 2vqe_Q           47 PEEKYKLGDVVEIIE   61 (105)
T ss_dssp             TTCCCCTTCEEEEEE
T ss_pred             CCCCCCCCCEEEEEE
Confidence            456899999999864


No 66 
>2b0a_A Hypothetical protein MJ0783; structural genomics, PSI, protein STRU initiative; 1.45A {Methanocaldococcus jannaschii} SCOP: c.8.8.1
Probab=22.76  E-value=46  Score=21.59  Aligned_cols=16  Identities=13%  Similarity=0.206  Sum_probs=12.8

Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      |..+++.+||++.+++
T Consensus        76 It~~~i~~gd~vlirT   91 (186)
T 2b0a_A           76 FPGNKLPACDILLIYT   91 (186)
T ss_dssp             CSSCCCCSCSEEEEEC
T ss_pred             cCHHHCCCCcEEEEEC
Confidence            5556888999999975


No 67 
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=22.72  E-value=1e+02  Score=17.45  Aligned_cols=28  Identities=18%  Similarity=0.191  Sum_probs=20.2

Q ss_pred             CeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        62 ~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.+.+..||+  ... ....|..||.|.+-+
T Consensus        66 ~~v~v~VNg~--~v~-~~~~L~dGDeV~i~p   93 (98)
T 1vjk_A           66 ADVNIAVNGR--YVS-WDEELKDGDVVGVFP   93 (98)
T ss_dssp             SSBEEEETTB--CCC-TTCBCCTTCEEEEES
T ss_pred             CcEEEEECCE--ECC-CCCCCCCCCEEEEEC
Confidence            4567888887  443 356799999988743


No 68 
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=22.21  E-value=44  Score=21.38  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=15.3

Q ss_pred             EEEeCCccceEEEeC--CCCCCCCEEEEe
Q psy6019          65 KVIRGDKSGVQKVRA--KEIVPGDIVEVS   91 (93)
Q Consensus        65 ~Vir~g~~~~~~i~~--~elv~GDiv~v~   91 (93)
                      .+.|+|+  .. +|.  ..+.+||++.+-
T Consensus       177 ~i~R~~~--~~-~p~~~~~l~~gD~l~v~  202 (218)
T 3l4b_C          177 AIVRGGV--LV-VPRGDTEILSGDKLYVI  202 (218)
T ss_dssp             EEEESSC--EE-CCCTTCBCCTTEEEEEE
T ss_pred             EEEECCE--EE-cCCCCCEECCCCEEEEE
Confidence            3446776  33 454  357899999874


No 69 
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=22.18  E-value=72  Score=21.60  Aligned_cols=14  Identities=36%  Similarity=0.553  Sum_probs=11.0

Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      ++..+|||.|.+..
T Consensus       222 vd~~~PGDrV~vtG  235 (268)
T 2vl6_A          222 VDSARPGDRVKVTG  235 (268)
T ss_dssp             TTSSCTTCEEEEEE
T ss_pred             cCcccCCCEEEEEE
Confidence            46788999998753


No 70 
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.93  E-value=1.4e+02  Score=17.87  Aligned_cols=28  Identities=18%  Similarity=0.113  Sum_probs=19.3

Q ss_pred             CeeEEEeCCccceEEEeCC----CCCCCCEEEEe
Q psy6019          62 EMGKVIRGDKSGVQKVRAK----EIVPGDIVEVS   91 (93)
Q Consensus        62 ~~a~Vir~g~~~~~~i~~~----elv~GDiv~v~   91 (93)
                      ..|+|-..|.  .++++..    +..+||-|.+.
T Consensus        38 ~~A~Vd~~Gv--~reV~l~Lv~e~~~vGDyVLVH   69 (103)
T 3d3r_A           38 QSVTVDTLGV--RRDVSSHLMTEPLAIGDYVLIH   69 (103)
T ss_dssp             TEEEEEETTE--EEEEECTTBSSCCCTTCEEEEE
T ss_pred             CEEEEEcCCE--EEEEEEEeecCCCCCCCEEEEe
Confidence            3566666676  5666543    57799999885


No 71 
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=21.50  E-value=76  Score=21.71  Aligned_cols=14  Identities=43%  Similarity=0.812  Sum_probs=11.0

Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      ++..+|||.|.+..
T Consensus       209 vd~~~PGDrV~vtG  222 (279)
T 1ltl_A          209 VDTLTPGDIVRVTG  222 (279)
T ss_dssp             TTCCCTTCEEEEEE
T ss_pred             cCccCCCCEEEEEE
Confidence            46788999998753


No 72 
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=20.55  E-value=34  Score=18.76  Aligned_cols=28  Identities=32%  Similarity=0.311  Sum_probs=19.4

Q ss_pred             CCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      ++.+.+..||+  ... ....|..||.|.+-
T Consensus        44 ~~~v~VavNg~--~v~-~~~~L~dGD~V~i~   71 (77)
T 1rws_A           44 TESAIAKVNGK--VVL-EDDEVKDGDFVEVI   71 (77)
T ss_dssp             SCSSCEEETTE--EEC-SSSCCCSSCCCBCS
T ss_pred             CcCEEEEECCE--ECC-CCCCcCCCCEEEEE
Confidence            44566778888  444 34689999988663


No 73 
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.43  E-value=52  Score=18.53  Aligned_cols=17  Identities=24%  Similarity=0.444  Sum_probs=13.0

Q ss_pred             EEEeCC---CCCCCCEEEEe
Q psy6019          75 QKVRAK---EIVPGDIVEVS   91 (93)
Q Consensus        75 ~~i~~~---elv~GDiv~v~   91 (93)
                      .+++.+   ++.+||++.+.
T Consensus        26 ~~itl~ell~L~~GdVi~Ld   45 (84)
T 1o9y_A           26 LRLTLAELRRLDAGTILEVT   45 (84)
T ss_dssp             EEEEHHHHHTCCTTCEEEEC
T ss_pred             ceeEHHHHhcCCCCCEEEeC
Confidence            556555   78899999885


No 74 
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=20.03  E-value=58  Score=17.74  Aligned_cols=11  Identities=55%  Similarity=0.842  Sum_probs=8.4

Q ss_pred             CCCCCCEEEEe
Q psy6019          81 EIVPGDIVEVS   91 (93)
Q Consensus        81 elv~GDiv~v~   91 (93)
                      -+.+||.|.+.
T Consensus        46 ~i~~GD~V~ve   56 (71)
T 1hr0_W           46 RILPGDRVVVE   56 (71)
T ss_dssp             CCCTTCEEEEE
T ss_pred             CCCCCCEEEEE
Confidence            34599999885


Done!