RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6019
(93 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 72.3 bits (178), Expect = 9e-17
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 46 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+
Sbjct: 110 ERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAV 156
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 56.1 bits (136), Expect = 4e-11
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 43 YQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
YQ E + + I + K P+ VIR ++ A ++V GD+VE+
Sbjct: 159 YQ-EFKSTNIIASFKNLVPQQATVIRDGD--KFQINADQLVVGDLVEMKG 205
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 53.0 bits (128), Expect = 7e-10
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 43 YQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
YQ E + +++ K P+ VIR + + A+ +V GD+VEV
Sbjct: 154 YQ-EAKSSRIMDSFKNMVPQQALVIRDGE--KSTINAEFVVAGDLVEVKG 200
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 46.5 bits (111), Expect = 1e-07
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 46 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
E NA +A AL KV+R K + A +VPGDIV +
Sbjct: 114 ENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAILVPGDIVSIK 157
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 46.2 bits (110), Expect = 2e-07
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 46 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
E A S ++ LK+ V+R ++++ A E+VPGDI++V E
Sbjct: 162 EFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVVPGDILQVEE 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.022
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 46/132 (34%)
Query: 1 MADLSLVGCYNMSA-------MSTE-------QRNRMMLASAKRNLASMAYFALTEYQKE 46
A SL G Y +A MS E R M + R+ + + +
Sbjct: 1759 FAGHSL-GEY--AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 47 RNAES-AIEALKEYEPEMGK------------------VIRGDKSGVQKV-------RAK 80
R A S + EAL+ +GK V GD + V + +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 81 EIVPGDIVEVSE 92
+I DI+E+ +
Sbjct: 1876 KI---DIIELQK 1884
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.032
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 46 ERNAESAIEA-LKEYEPE 62
E+ A ++A LK Y +
Sbjct: 18 EKQALKKLQASLKLYADD 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein
complex, EXON junct complex, signaling protein; 1.85A
{Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B*
2j0s_D* 2xb2_D*
Length = 110
Score = 29.2 bits (66), Expect = 0.092
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR 78
+AL EY+ + A +A EAL E MG+ I+ D V+ +
Sbjct: 70 YALVEYETHKQALAAKEALNGAE-IMGQTIQVDWCFVKGPK 109
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 113
Score = 28.9 bits (65), Expect = 0.11
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
A Y+ A++A+E + G ++ V R K
Sbjct: 67 DATVSYEDPPTAKAAVEWFDGKD-FQGSKLK-----VSLARKKP 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, RNA recognition; NMR {Homo
sapiens}
Length = 99
Score = 28.8 bits (65), Expect = 0.11
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
A + +A++AI+ E G I+
Sbjct: 65 EATVSFDDPPSAKAAIDWFDGKE-FSGNPIK 94
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 28.5 bits (64), Expect = 0.16
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
A + +A++AI+ E G+ V +
Sbjct: 59 EATVSFDDPPSAKAAIDWFDGKE------FSGNPIKVSFATRRA 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.19
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 10 YN--MSAMSTEQRNRMM---LASAKRNLASMAYFALTEYQKER--NAESAIEALKEYEPE 62
Y MS + TEQR M + +R+ +Y R +AL E P
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 63 MGKVIRGDK-SG-----VQKVRAKEIV---PGDI 87
+I G SG + + ++ I
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo
sapiens} SCOP: d.58.7.1
Length = 106
Score = 28.0 bits (63), Expect = 0.21
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
+ L EY+ + A++A+E L + MG+ I D
Sbjct: 67 YTLVEYETYKEAQAAMEGLNGQD-LMGQPISVDWC 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar
mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 28.3 bits (63), Expect = 0.30
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
+AL EY+ + A +A EAL E MG+ I+ D V+ + +
Sbjct: 116 YALVEYETHKQALAAKEALNGAEI-MGQTIQVDWCFVKGPKRVK 158
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA
splicing, mRNA transport, nonsense-mediated mRNA decay,
nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Length = 126
Score = 27.3 bits (61), Expect = 0.44
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
+ L EY+ + A++A+E L + MG+ I D V+ +
Sbjct: 66 YTLVEYETYKEAQAAMEGLNGQD-LMGQPISVDWCFVRGPPKGK 108
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription,
splicing, RNA processing, nonsense mediated D NMD,
HDAC, histone deacetylation; 1.90A {Homo sapiens}
Length = 88
Score = 27.1 bits (61), Expect = 0.45
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
+A E++ AE A++ + + G+ I V A
Sbjct: 49 YAYVEFENPDEAEKALKHMDGGQ-IDGQEIT-----ATAVLAPW 86
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 0.50
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 27/93 (29%)
Query: 2 ADLSLVGCY------------NMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERN- 48
A + +VG Y NM A S S RN
Sbjct: 1125 ARICIVGGYDDFQEEGSFEFGNMKATSN--TLEEFEHGRTPAEMSRP------ATTTRNG 1176
Query: 49 ---AESA-IEALKEYE--PEMGKVIRGDKSGVQ 75
A+ A I+ + + + +MG I G +
Sbjct: 1177 FMEAQGAGIQIIMQADLALKMGVPIYGIVAMAA 1209
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition
motif, C-terminal helix, N-terminal helix, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 26.8 bits (60), Expect = 0.66
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
+ EYQ + A SA+ L E G+ +R D +
Sbjct: 52 YGFCEYQDQETALSAMRNLNGRE-FSGRALRVDNA 85
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 26.4 bits (59), Expect = 0.93
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
FA + + +A AI + + ++ + +
Sbjct: 59 FAFISFHRREDAARAIAGVSGFG-YDHLILNVEWA 92
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 107
Score = 26.1 bits (58), Expect = 1.1
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
F ++ +++A+ A AL G+ + + +
Sbjct: 60 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49)
(SAP 49) (SF3B50)...; structure genomics,RRM
domain,splicing factor 3B; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 105
Score = 26.1 bits (58), Expect = 1.1
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAK 80
+ E+ E +A+ AI+ + + GK IR +K+
Sbjct: 59 YGFVEFLSEEDADYAIKIMDMIK-LYGKPIRVNKASAHNKNLS 100
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM
domaim, RDB, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 26.1 bits (58), Expect = 1.2
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
A EY+ E A A+ + +I+ S
Sbjct: 60 LAYVEYENESQASQAVMKMDGMT-IKENIIKVAIS 93
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain,
RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 25.7 bits (57), Expect = 1.4
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
+ E+ + R+A +A+ A+ +GK ++ + +
Sbjct: 57 YCFVEFYEHRDAAAALAAM-NGRKILGKEVKVNWA 90
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wi6_A
Length = 88
Score = 25.4 bits (56), Expect = 1.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 38 FALTEYQKERNAESAIEALKEYE 60
A A++AI+ +Y
Sbjct: 42 TAFVTLLNGEQAQNAIQMFHQYS 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex,
mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB:
2x1b_A 2x1a_A 2km8_B
Length = 96
Score = 25.3 bits (56), Expect = 1.9
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
+A E++ ++ SA+ L Y+ + ++
Sbjct: 46 YAFIEFRDLESSASAVRNLNGYQ-LGSRFLK 75
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor)...; structure genomics, SURP
domain, splicing factor SF2; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 25.4 bits (56), Expect = 2.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
FA E++ R+AE A+ Y+ G +R
Sbjct: 63 FAFVEFEDPRDAEDAVYGRDGYDY-DGYRLR 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger,
CYP33, MLL, RNA binding protein, ALT splicing, mRNA
processing, mRNA splicing; 1.85A {Homo sapiens} PDB:
2kyx_A 3lpy_A*
Length = 85
Score = 24.8 bits (55), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
FA E++ +A +AI+ + E E G+ IR
Sbjct: 51 FAFVEFELAEDAAAAIDNMNESE-LFGRTIR 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B
3fey_B 1h6k_X
Length = 156
Score = 25.5 bits (56), Expect = 2.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
F EY +AE+A+ + ++IR D
Sbjct: 83 FCFVEYYSRADAENAMRYINGTRL-DDRIIRTDWD 116
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein
1; RRM domain, RBD, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 94
Score = 24.9 bits (55), Expect = 2.8
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
A + + +A++ A+ + G+VI+
Sbjct: 60 VAFILFLDKDSAQNCTRAINNKQ-LFGRVIK 89
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA
binding protein-RNA complex; 1.85A {Homo sapiens} PDB:
3nna_A 3nnc_A 2dhs_A 3nnh_A
Length = 175
Score = 25.3 bits (56), Expect = 2.9
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 38 FALTEYQKERNAESAIEAL--KEYEPEMGKVIRGDKSGVQKVRAKE 81
+ + A A AL + P M I+ + +K A E
Sbjct: 49 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE 94
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding
protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi}
SCOP: d.58.7.1
Length = 139
Score = 25.1 bits (55), Expect = 3.0
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 81
+ ++Q +A+ AI L + + K ++ V +
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFN-ILNKRLK-----VALAASGH 123
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 103
Score = 24.9 bits (55), Expect = 3.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
FA + R+A+ A A+ E G+ +R
Sbjct: 57 FAFVRFHDRRDAQDAEAAMDGAEL-DGRELR 86
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 93
Score = 24.9 bits (55), Expect = 3.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
+A +Y + A AIE L GK++
Sbjct: 46 YAFVDYPDQNWAIRAIETLSGKVELHGKIME 76
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif,
RRM, transcription termination, NUC phosphoprotein; NMR
{Saccharomyces cerevisiae}
Length = 96
Score = 24.5 bits (54), Expect = 3.7
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
F ++ ++ AIE + GK +
Sbjct: 47 FGFIQFDNPQSVRDAIECESQEMN-FGKKLI 76
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif,
RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 111
Score = 24.8 bits (54), Expect = 3.7
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 37 YFALTEYQKERNAESAIEALKEYEPEMGKVIR 68
A Y + +A AI+ + + G+ ++
Sbjct: 64 ASAYVTYIRSEDALRAIQCVNNVVVD-GRTLK 94
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 25.0 bits (55), Expect = 3.8
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 20 RNRMMLASAKRNLASMAYFALTEYQKERNA--ESAIEALKEYEPEMGK 65
+ R + + + T +E+ A + IEALK E ++G
Sbjct: 94 QTRFWADYVDKKIYDLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLGD 141
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 92
Score = 24.5 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
+A ++ +A AI L E GK +
Sbjct: 46 YAFVHMERAEDAVEAIRGLDNTE-FQGKRMH 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 90
Score = 24.5 bits (54), Expect = 3.9
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
+ + + AE AI L Y+ G I
Sbjct: 44 YGFVHIEDKTAAEDAIRNLHHYK-LHGVNIN 73
>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH;
1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5
Length = 231
Score = 24.8 bits (54), Expect = 4.3
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 19 QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGK 65
R K + L + E L+ E E+G
Sbjct: 104 ARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGD 150
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 97
Score = 24.5 bits (54), Expect = 4.5
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGD 70
FA +Y+ A++A ++ G + G
Sbjct: 55 FAYIQYESLDAAQAACAKMR------GFPLGGP 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing
factor, RNA protein complex, SMN, binding protein-RNA
complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Length = 129
Score = 24.7 bits (54), Expect = 4.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
FA ++ +A+ A E E + G+ IR D S
Sbjct: 90 FAFVYFENVDDAKEAKERANGMELD-GRRIRVDFS 123
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 102
Score = 24.5 bits (54), Expect = 4.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
FA E++ +A +AI+ + E E G+ IR
Sbjct: 56 FAFVEFELAEDAAAAIDNMNESE-LFGRTIR 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 24.5 bits (54), Expect = 4.7
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
F ++ E +A++A EA+++ E G + D +
Sbjct: 56 FGFVDFNSEEDAKAAKEAMEDGE-IDGNKVTLDWA 89
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic
initiation factor 3 complex, RNA recognition motif; NMR
{Homo sapiens}
Length = 105
Score = 24.3 bits (53), Expect = 4.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 38 FALTEYQKERNAESAIEALKEYE 60
+ EY +A A++ Y+
Sbjct: 63 YIFLEYASPAHAVDAVKNADGYK 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding
protein; NMR {Homo sapiens}
Length = 101
Score = 24.2 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
FA E++ R+AE A+ L G +R
Sbjct: 39 FAFVEFEDPRDAEDAVRGLDGKVI-CGSRVR 68
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 24.2 bits (53), Expect = 5.2
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
F ++ ++ AIE + GK +
Sbjct: 59 FGFIQFDNPQSVRDAIEXESQEMN-FGKKLI 88
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 24.9 bits (55), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 15/39 (38%)
Query: 61 PEMG--------KVIRGDKSGVQKVRAKEIVPGDIVEVS 91
PE+G +++RG +R ++V D+VEVS
Sbjct: 255 PEIGGMTSLQAQQLVRG-------LRGLDLVGADVVEVS 286
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 24.6 bits (53), Expect = 5.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
AL + A A+ L ++ +R
Sbjct: 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 221
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 101
Score = 24.2 bits (53), Expect = 5.7
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
+A E+ +A+ A+ + + E G+ IR +
Sbjct: 55 YAFIEFASFEDAKEALNSCNKRE-IEGRAIRLELQ 88
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Length = 185
Score = 24.7 bits (53), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 65 KVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
V+ + + RA E+ GD V VSE
Sbjct: 94 PVLVYENGRFIEKRAFEVKEGDKVLVSE 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Length = 110
Score = 24.3 bits (53), Expect = 6.0
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR 78
+A +Y ER+A +A+ G+ + + +G K
Sbjct: 64 YAFVQYSNERHARAAVLGENGRV-LAGQTLDINMAGEPKPD 103
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 95
Score = 23.7 bits (52), Expect = 6.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
FA ++ +A+ A E E + G+ IR
Sbjct: 59 FAFVYFENVDDAKEAKERANGMELD-GRRIRVSGP 92
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT
arginine/serine-rich 2, S35, splicing factor SC35,; RRM
domain, cell WALL; NMR {Streptococcus SP}
Length = 158
Score = 24.0 bits (52), Expect = 7.5
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIRGDKS 72
FA + +R+AE A++A+ G+ +R +
Sbjct: 114 FAFVRFHDKRDAEDAMDAMDGAVL-DGRELRVQMA 147
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 24.0 bits (53), Expect = 8.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 79 AKEIVPGDIVEVS 91
+ + V DIVE S
Sbjct: 262 SYKAVGFDIVEFS 274
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A
{Saccharomyces cerevisiae} PDB: 3ns5_A
Length = 100
Score = 23.5 bits (51), Expect = 9.0
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 38 FALTEYQKERNAESAIEALKEYE 60
F E +A+ I++
Sbjct: 56 FLFVECGSMNDAKKIIKSFHGKR 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 23.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEM-GKVIR 68
FA EY+ R A A L ++ G I
Sbjct: 54 FAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA
recognition motif, RRM, RNP, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Length = 99
Score = 23.4 bits (51), Expect = 10.0
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
F + AE A L GK +R
Sbjct: 53 FGFIRLETRTLAEIAKVELDNMP-LRGKQLR 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.327
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,317,317
Number of extensions: 68387
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 80
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)