RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6019
         (93 letters)



>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain
          A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 47.4 bits (112), Expect = 4e-09
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
          EMGKV R D+  VQ+++A++IVPGDIVEV+ 
Sbjct: 1  EMGKVYRADRKSVQRIKARDIVPGDIVEVAV 31


>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
          Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 25.3 bits (55), Expect = 0.85
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 38 FALTEYQKERNAESAIEALKEYEPEMGKVIR 68
          F   ++  +++A+ A  AL       G+ + 
Sbjct: 53 FGFVDFITKQDAKKAFNALCHSTHLYGRRLV 83


>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
          {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 22.7 bits (49), Expect = 5.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 64 GKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
          G V+    SG  +     I+ GD V V 
Sbjct: 28 GHVVTAHISGKMRKNYIRILTGDKVTVE 55


>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
          {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 22.3 bits (48), Expect = 6.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 64 GKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
          G  I    SG  ++    I+PGD V V 
Sbjct: 29 GPEILAYISGKMRMHYIRILPGDRVVVE 56


>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019
          {Anabaena variabilis [TaxId: 1172]}
          Length = 131

 Score = 22.8 bits (49), Expect = 8.5
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 48 NAESAIEALKEYEPEMG 64
           A+  + A+K Y   +G
Sbjct: 53 TADEGLLAMKTYSHALG 69


>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
          fulgidus [TaxId: 2234]}
          Length = 202

 Score = 22.6 bits (47), Expect = 9.3
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 15 MSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKE 58
          M  E+    + + A   L       L   Q E     A+E +  
Sbjct: 1  MKVEELAESISSYAVGILKEEGIEELFPPQAE-----AVEKVFS 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,142
Number of extensions: 11319
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 12
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)