BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6025
(89 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 10 PLV-KRVQEEELSSTDS-SIEFLLCPSHVGIAGNE----EAKQATNDDVTHQELFFDEIK 63
PLV K ++ +L + D + F+ PSHVGI GNE EAK+A N V+ ++ + +++
Sbjct: 1035 PLVHKSLKLLDLITADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLR 1094
Query: 64 INIEKKYLEEW 74
+I EW
Sbjct: 1095 QSIASATYREW 1105
>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
Length = 116
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 8 ENPLVKRVQEEELSSTDSSIEFLLC--PSHVGIAGNEEAKQ----ATNDDVTHQELFFDE 61
+NPLV ++ S++ E LC PS VGI GNE+A + A + V ++ + +
Sbjct: 5 QNPLVLEIRNRLFSASKRKKEITLCWVPSRVGIPGNEDADRVASSAKDRQVDLHKIPYTD 64
Query: 62 IKINIEK----KYLEEWN 75
K ++K ++ EEWN
Sbjct: 65 YKHALKKSTKCRWQEEWN 82
>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
Length = 364
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 20 LSSTDSSIEFLLCPSHVGIAGNEE----AKQA-----TNDDVTHQELFFDEIKINIEKKY 70
L+ D I F+ CPSHVGI GNE AKQA N + H + F + ++ ++
Sbjct: 59 LAGRDKRIIFIWCPSHVGIPGNETADTLAKQALGMNILNCPIPHTD-FKPITRSFVKTQW 117
Query: 71 LEEWNIQNG 79
EW+ + G
Sbjct: 118 QSEWDQETG 126
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 2 IINMFHENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFF-- 59
I N H +P + V+ LSS I L PSH GI GNE A +A + + F
Sbjct: 1034 IRNWNHNDPTTQEVRHI-LSSHPKKITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTP 1092
Query: 60 -------DEIKINIEKKYLEEW 74
IK+ +++K L EW
Sbjct: 1093 FNSKDLKSRIKLYLKEKKLSEW 1114
>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
Length = 498
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 3 INMFHENPLVKRVQEEE--LSSTDSSIEFLLCPSHVGIAGNEE----AKQA-----TNDD 51
I++ H P V+ + ++ L+ D I F+ CPSHVGI GNE AKQA N
Sbjct: 154 IDLIH--PYVQSILQKCTCLAGRDKRIIFIWCPSHVGIPGNETADTVAKQALGMNILNCH 211
Query: 52 VTHQELFFDEIKIN-IEKKYLEEWNIQNG 79
+ H + F I + ++ ++ EW+ + G
Sbjct: 212 IPHTD--FKPITCSFVKTQWQSEWDQETG 238
>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1045
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 18 EELSSTDSSIEFLLCPSHVGIAGNEEA 44
+ L+++ +S+ F PSHVGIAGNEEA
Sbjct: 864 QALAASGASVSFHWLPSHVGIAGNEEA 890
>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1031
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 20 LSSTDSSIEFLLCPSHVGIAGNEEA 44
L+++ +S+ F PSHVGIAGNEEA
Sbjct: 1001 LTASGASVSFHWLPSHVGIAGNEEA 1025
>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
Length = 619
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 20 LSSTDSSIEFLLCPSHVGIAGNEEA 44
L+ D I F+ CPSHVGI GNE A
Sbjct: 87 LAGRDKRIIFIWCPSHVGIPGNETA 111
>gi|37728002|gb|AAR02368.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDEIKINIE- 67
+PLV+++ +E LS +I P+H GI GNEE + N + Q LF ++I+ E
Sbjct: 671 SPLVEQIIQELLSK--EAIYLSWVPAHKGIGGNEEVDKLVNSGI-RQVLFMEQIEPAKED 727
Query: 68 -KKYLEEWN 75
+KY W
Sbjct: 728 HEKYHSNWK 736
>gi|126360752|gb|ABO09897.1| pol protein [Simian immunodeficiency virus]
Length = 655
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDEIKINIE 67
E+PLV+++ ++ L T +I P+H GI GN+E + + Q LF + I+ IE
Sbjct: 429 ESPLVEKIIQQLL--TKEAIYLSWVPAHKGIGGNQEVDHLVSKGI-RQVLFMENIEPAIE 485
Query: 68 --KKYLEEWNI----QNGPILLVQTKTN 89
KY W N P LL + N
Sbjct: 486 DHDKYHSNWKYLRDKYNIPTLLAKEIVN 513
>gi|126360750|gb|ABO09896.1| pol protein [Simian immunodeficiency virus]
Length = 661
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDEIKINIE 67
E+PLV+++ ++ L T +I P+H GI GN+E + + Q LF + I+ IE
Sbjct: 434 ESPLVEKIIQQLL--TKEAIYLSWVPAHKGIGGNQEVDHLVSKGI-RQVLFMENIEPAIE 490
Query: 68 --KKYLEEWNI----QNGPILLVQTKTN 89
KY W N P LL + N
Sbjct: 491 DHDKYHSNWKYLRDKYNIPTLLAKEIVN 518
>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
Length = 397
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 16 QEEELSSTDSSIEFLLCPSHVGIAGNE----EAKQATNDDVTHQEL----FFDEIKINIE 67
++ L + F+ CPSHVGI GNE +AKQA VT L + I+ ++
Sbjct: 218 KQNNLVRKGKKVVFIWCPSHVGILGNEVADRQAKQALVMPVTKLPLPHTDYKSPIRSYVK 277
Query: 68 KKYLEEWN 75
+ EW+
Sbjct: 278 SLWQNEWD 285
>gi|134140582|gb|ABO61054.1| pol protein [Simian immunodeficiency virus]
Length = 1013
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDEIKINIE 67
E+PLV+++ ++ L T +I P+H GI GN+E + + Q LF + I+ IE
Sbjct: 674 ESPLVEKIIQQLL--TKEAIYLSWVPAHKGIGGNQEVDHLVSKGI-RQVLFMENIEPAIE 730
Query: 68 --KKYLEEWNI----QNGPILLVQ 85
KY W N P LL +
Sbjct: 731 DHDKYHSNWKYLRDKYNIPTLLAK 754
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,351,005,585
Number of Sequences: 23463169
Number of extensions: 46589073
Number of successful extensions: 95043
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 95037
Number of HSP's gapped (non-prelim): 24
length of query: 89
length of database: 8,064,228,071
effective HSP length: 59
effective length of query: 30
effective length of database: 6,679,901,100
effective search space: 200397033000
effective search space used: 200397033000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)