BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6025
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0STD6|TPIS_CLOPS Triosephosphate isomerase OS=Clostridium perfringens (strain
SM101 / Type A) GN=tpiA PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 12 VKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDE---IKINIEK 68
VK V+E + D+ E ++CP+ V + ++A + TN V Q + F+E I
Sbjct: 20 VKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAP 79
Query: 69 KYLEEWNI 76
+ LE NI
Sbjct: 80 RMLEAMNI 87
>sp|Q8XKU1|TPIS_CLOPE Triosephosphate isomerase OS=Clostridium perfringens (strain 13 /
Type A) GN=tpiA PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 12 VKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDE---IKINIEK 68
VK V+E + D+ E ++CP+ V + ++A + TN V Q + F+E I
Sbjct: 20 VKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAP 79
Query: 69 KYLEEWNI 76
+ LE NI
Sbjct: 80 RMLEAMNI 87
>sp|Q0TQY8|TPIS_CLOP1 Triosephosphate isomerase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=tpiA PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 12 VKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQELFFDE---IKINIEK 68
VK V+E + D+ E ++CP+ V + ++A + TN V Q + F+E I
Sbjct: 20 VKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAP 79
Query: 69 KYLEEWNI 76
+ LE NI
Sbjct: 80 RMLEAMNI 87
>sp|Q705G8|VE1_BPV5 Replication protein E1 OS=Bovine papillomavirus type 5 GN=E1 PE=3
SV=1
Length = 626
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 27 IEFLLCPSHVGIAGNEEAKQATNDDVTHQEL---------FFDEIKINIEKKYLEEWNIQ 77
+ F SH +A EAK A DD TH L FFD + I++K+ I+
Sbjct: 474 LNFANSASHFWLAPLTEAKVALIDDATHACLKYCDTYLRNFFDGYSVCIDRKHKNAVQIK 533
Query: 78 NGPILL 83
P+LL
Sbjct: 534 APPMLL 539
>sp|P34092|MYOB_DICDI Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1
SV=2
Length = 1111
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 43 EAKQATNDDVTHQELFFDEIKINIEKKYLEEWNIQN-GPILL 83
+AKQ T+D V ++ DEI N++K+Y+ ++ N GP+L+
Sbjct: 6 QAKQGTDDLVMLPKVSEDEICENLKKRYMNDFIYTNIGPVLI 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,665,069
Number of Sequences: 539616
Number of extensions: 1159171
Number of successful extensions: 2430
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 14
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)