Query psy6025
Match_columns 89
No_of_seqs 101 out of 106
Neff 3.5
Searched_HMMs 29240
Date Sat Aug 17 00:37:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.2 9.8E-12 3.3E-16 86.0 4.0 45 8-54 103-147 (150)
2 3h08_A RNH (ribonuclease H); R 99.2 9.1E-12 3.1E-16 83.7 3.5 45 8-55 101-145 (146)
3 1jl1_A Ribonuclease HI; RNAse 99.2 2.7E-11 9.3E-16 83.1 4.5 46 9-57 101-146 (155)
4 2qkb_A Ribonuclease H1, HS-RNA 99.1 3E-11 1E-15 82.2 4.6 44 9-55 109-152 (154)
5 2kq2_A Ribonuclease H-related 99.1 1.2E-11 4E-16 84.7 2.2 31 25-55 108-138 (147)
6 2e4l_A Ribonuclease HI, RNAse 99.1 5.6E-11 1.9E-15 81.9 4.5 43 9-54 103-145 (158)
7 3p1g_A Xenotropic murine leuke 99.0 1.2E-10 4E-15 82.3 3.4 47 9-57 108-159 (165)
8 1ril_A Ribonuclease H; hydrola 99.0 1.8E-10 6.2E-15 80.2 3.2 44 9-55 106-149 (166)
9 2lsn_A Reverse transcriptase; 98.8 2.3E-09 7.8E-14 76.0 4.0 44 8-53 113-162 (165)
10 1mu2_A HIV-2 RT; HIV-2 reverse 98.8 2E-09 6.9E-14 86.1 3.6 43 8-52 513-555 (555)
11 2zd1_A Reverse transcriptase/r 98.7 3.4E-09 1.1E-13 84.9 2.0 42 8-51 516-557 (557)
12 3hst_B Protein RV2228C/MT2287; 98.1 3.4E-06 1.2E-10 54.8 4.2 32 19-54 102-133 (141)
13 3u3g_D Ribonuclease H, RNAse H 98.0 2.9E-06 9.9E-11 54.6 3.2 29 22-54 109-137 (140)
14 2ehg_A Ribonuclease HI; RNAse 97.9 7.1E-06 2.4E-10 54.7 3.3 38 10-54 97-134 (149)
15 2i0f_A 6,7-dimethyl-8-ribityll 49.1 17 0.00056 25.6 3.5 31 18-50 36-66 (157)
16 1kn6_A Prohormone convertase 1 37.1 12 0.00042 24.1 1.1 13 39-51 21-33 (90)
17 1c2y_A Protein (lumazine synth 35.4 33 0.0011 24.1 3.3 31 18-50 37-69 (156)
18 3nq4_A 6,7-dimethyl-8-ribityll 35.2 38 0.0013 23.8 3.6 31 18-50 36-70 (156)
19 1hqk_A 6,7-dimethyl-8-ribityll 31.9 41 0.0014 23.5 3.2 31 18-50 36-69 (154)
20 1rvv_A Riboflavin synthase; tr 31.6 41 0.0014 23.5 3.2 31 18-50 36-69 (154)
21 3luu_A Uncharacterized protein 30.2 22 0.00076 22.4 1.5 16 25-40 75-91 (101)
22 2c92_A 6,7-dimethyl-8-ribityll 29.3 50 0.0017 23.2 3.3 30 18-49 41-71 (160)
23 2job_A Antilipopolysaccharide 29.1 52 0.0018 22.1 3.2 12 30-41 53-64 (102)
24 1ejb_A Lumazine synthase; anal 26.8 52 0.0018 23.3 3.1 30 18-49 40-72 (168)
25 2xze_A STAM-binding protein; h 23.0 63 0.0022 21.9 2.8 43 31-75 73-119 (146)
26 1kz1_A 6,7-dimethyl-8-ribityll 23.0 53 0.0018 23.1 2.5 31 18-50 41-75 (159)
27 1wfw_A Kalirin-9A; SH3 domain, 21.4 24 0.00081 22.7 0.4 7 30-36 58-64 (74)
28 2zo4_A Metallo-beta-lactamase 20.8 37 0.0013 23.7 1.3 12 25-36 161-172 (317)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.20 E-value=9.8e-12 Score=86.03 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhc
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTH 54 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~ 54 (89)
..++.+.+.+ ++ .....|.|.|||||+|++|||+||+||++|+..
T Consensus 103 n~~l~~~l~~-~l-~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 103 NVDLVNQIIE-QL-IKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp CHHHHHHHHH-HH-TTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred cHHHHHHHHH-HH-hhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 3456666652 23 456789999999999999999999999999864
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.19 E-value=9.1e-12 Score=83.75 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcc
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQ 55 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~ 55 (89)
..++.+.+.. .+.. ..|.|.|||||+|++|||+||+||++|+..+
T Consensus 101 n~~l~~~~~~-~~~~--~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 101 NIDLWQEILK-LTTL--HRVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp THHHHHHHHH-HHHH--SEEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHH-HHhh--CceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 3567777773 3332 4699999999999999999999999998643
No 3
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.15 E-value=2.7e-11 Score=83.10 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcccc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQEL 57 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~~~ 57 (89)
.++.+.|.. +.. ...|.|.|||||+|++|||.||+||++|+..+.+
T Consensus 101 ~~l~~~i~~--l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 101 VDLWQRLDA--ALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHHHH--HTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHH--HHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 567777773 333 3589999999999999999999999999987643
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.15 E-value=3e-11 Score=82.23 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQ 55 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~ 55 (89)
.++.+.|.. .+ . +..|.|.|||||+|++|||+||+||++|+..+
T Consensus 109 ~~l~~~i~~-l~-~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 109 KEDFVALER-LT-Q-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHH-HH-T-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH-HH-c-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 467777772 33 3 35699999999999999999999999998754
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.14 E-value=1.2e-11 Score=84.68 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=28.6
Q ss_pred CceEEEEecCccCCCccHHHHHhhhhhhhcc
Q psy6025 25 SSIEFLLCPSHVGIAGNEEAKQATNDDVTHQ 55 (89)
Q Consensus 25 ~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~ 55 (89)
..|.|.|||||+|++|||+||+||++|+...
T Consensus 108 ~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 108 GIYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp TTCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred CCeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 3899999999999999999999999998754
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.11 E-value=5.6e-11 Score=81.92 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTH 54 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~ 54 (89)
.++.+.+.. .+ . ...|.|.|||||+|++|||.||+||++|+..
T Consensus 103 ~~l~~~i~~-l~-~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 103 VDLWKRLDK-AA-Q-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHH-HH-T-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HH-c-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 467777773 33 3 3589999999999999999999999999987
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.03 E-value=1.2e-10 Score=82.29 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccC-----CCccHHHHHhhhhhhhcccc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVG-----IAGNEEAKQATNDDVTHQEL 57 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~G-----I~GNE~AD~~Ak~a~~~~~~ 57 (89)
.++.+.+. .++ .....|.|.|||||+| ++|||+||+||++|+..+..
T Consensus 108 ~dl~~~l~-~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 108 KNEILALL-KAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp HHHHHHHH-HHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 45556554 223 2467899999999999 99999999999999876543
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.99 E-value=1.8e-10 Score=80.25 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQ 55 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~ 55 (89)
.++.+.+.. .+ . ...|.|.|||||+|++|||+||+||++|+...
T Consensus 106 ~~l~~~i~~-l~-~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 106 RDLWEALLL-AM-A-PHRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HHHHHHHHH-HH-T-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHH-HH-h-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 467777773 33 3 25899999999999999999999999998764
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.83 E-value=2.3e-09 Score=75.97 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCccCC------CccHHHHHhhhhhhh
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGI------AGNEEAKQATNDDVT 53 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI------~GNE~AD~~Ak~a~~ 53 (89)
..++.+.+.+ +......|.|.|||||+|+ +|||+||+||++|+.
T Consensus 113 N~dL~~~l~~--~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 113 HISKWKSIAE--CLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp SHHHHHHHHH--HHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH--HHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 3466776662 3344568999999999996 589999999999874
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.81 E-value=2e-09 Score=86.10 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhh
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDV 52 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~ 52 (89)
..++.+.+.+ .+. ....|.|.|||||+|++|||+||+||++|+
T Consensus 513 ~~~l~~~~~~-~~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 513 ESKIVNQIIE-EMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp SCHHHHHHHH-HHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cHHHHHHHHH-Hhc-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 3566665552 222 356799999999999999999999999884
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.71 E-value=3.4e-09 Score=84.86 Aligned_cols=42 Identities=29% Similarity=0.518 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhh
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDD 51 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a 51 (89)
..++.+.+.. ++.. ...|.|.|||||+|++|||+||+||++|
T Consensus 516 ~~~l~~~~~~-~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 516 ESELVNQIIE-QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp SSHHHHHHHH-HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CHHHHHHHHH-HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 3567766652 3333 3579999999999999999999999986
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.08 E-value=3.4e-06 Score=54.85 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=26.9
Q ss_pred HhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhc
Q psy6025 19 ELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTH 54 (89)
Q Consensus 19 el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~ 54 (89)
.+......|.|.|||+ .|||.||+||++|+..
T Consensus 102 ~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 102 ALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 3445567899999996 8999999999999864
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.04 E-value=2.9e-06 Score=54.61 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.5
Q ss_pred cCCCceEEEEecCccCCCccHHHHHhhhhhhhc
Q psy6025 22 STDSSIEFLLCPSHVGIAGNEEAKQATNDDVTH 54 (89)
Q Consensus 22 ~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~ 54 (89)
+.-..|.|.|||+ +|||+||+||++|+..
T Consensus 109 ~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 109 ERVPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp HHCTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 3345899999995 8999999999999864
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.90 E-value=7.1e-06 Score=54.65 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhc
Q psy6025 10 PLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTH 54 (89)
Q Consensus 10 ~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~ 54 (89)
++.+.+.. .+..- +|.|.|||+ +|||.||+||++|+..
T Consensus 97 ~l~~~i~~-l~~~~--~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 97 PLYEKAIE-LKKKL--NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHHHHHH-HHHHH--TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcC--CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 45555552 23222 499999999 4999999999999864
No 15
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=49.13 E-value=17 Score=25.64 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHhhcCCCceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSSTDSSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
..|...+.+|.+.||||=--||- .|.++|+.
T Consensus 36 ~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 36 AALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 46767778899999999877763 45666654
No 16
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=37.11 E-value=12 Score=24.06 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.5
Q ss_pred CccHHHHHhhhhh
Q psy6025 39 AGNEEAKQATNDD 51 (89)
Q Consensus 39 ~GNE~AD~~Ak~a 51 (89)
.|+|.||++|++-
T Consensus 21 ~g~~~A~~iA~k~ 33 (90)
T 1kn6_A 21 GGQEAASAIAEEL 33 (90)
T ss_dssp STHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHc
Confidence 3789999999753
No 17
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=35.41 E-value=33 Score=24.07 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHhhcCC--CceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSSTD--SSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~~~--~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
+.|...+ .+|.+.||||=--||- .|.++|+.
T Consensus 37 ~~l~~~Gv~~~i~v~~VPGafEiP~--aa~~la~~ 69 (156)
T 1c2y_A 37 DTFKKYSVNEDIDVVWVPGAYELGV--TAQALGKS 69 (156)
T ss_dssp HHHHHTTCCSCCEEEEESSHHHHHH--HHHHHHHT
T ss_pred HHHHHcCCCCceEEEECCcHHHHHH--HHHHHHhc
Confidence 4565555 5899999999776662 45666643
No 18
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=35.24 E-value=38 Score=23.81 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHhhcCC----CceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSSTD----SSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~~~----~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
..|...+ .+|.+.||||=--|| =.|.++|+.
T Consensus 36 ~~l~~~G~v~~~~i~v~~VPGafEiP--~aa~~la~~ 70 (156)
T 3nq4_A 36 DALTRIGQVKDDNITVVWVPGAYELP--LATEALAKS 70 (156)
T ss_dssp HHHHHTTCCCTTSEEEEEESSTTTHH--HHHHHHHHH
T ss_pred HHHHHcCCCcccceEEEEcCcHHHHH--HHHHHHHhc
Confidence 3555555 579999999988887 456666654
No 19
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=31.91 E-value=41 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=21.5
Q ss_pred HHhhcCC---CceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSSTD---SSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~~~---~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
..|...+ .+|.+.||||=--||- .|.++|+.
T Consensus 36 ~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1hqk_A 36 DCIVRHGGREEDITLVRVPGSWEIPV--AAGELARK 69 (154)
T ss_dssp HHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHTC
T ss_pred HHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3555554 5799999999887773 45666653
No 20
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=31.62 E-value=41 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHhhcCC---CceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSSTD---SSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~~~---~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
..|...+ .+|.+.||||=--||- .|.++|+.
T Consensus 36 ~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1rvv_A 36 DALLRHGVDTNDIDVAWVPGAFEIPF--AAKKMAET 69 (154)
T ss_dssp HHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3555554 5799999999887773 45666653
No 21
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=30.18 E-value=22 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.7
Q ss_pred CceEEEEecCc-cCCCc
Q psy6025 25 SSIEFLLCPSH-VGIAG 40 (89)
Q Consensus 25 ~~i~~~WvP~H-~GI~G 40 (89)
..+.+.|-.|| +||.-
T Consensus 75 yal~i~wsDGH~~s~Y~ 91 (101)
T 3luu_A 75 YAVQLHFSDGHNTGIFT 91 (101)
T ss_dssp TEEEEEETTSCCCCEEE
T ss_pred CeEEEEECCCCceeEEC
Confidence 57899999999 99864
No 22
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=29.28 E-value=50 Score=23.24 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=21.8
Q ss_pred HHhhcCCC-ceEEEEecCccCCCccHHHHHhhh
Q psy6025 18 EELSSTDS-SIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 18 ~el~~~~~-~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
+.|...+- +|.+.||||=--||- .|.++|+
T Consensus 41 ~~l~~~G~~~i~v~~VPGafEiP~--aak~la~ 71 (160)
T 2c92_A 41 KVAAGCGLDDPTVVRVLGAIEIPV--VAQELAR 71 (160)
T ss_dssp HHHHHTTCSCCEEEEESSGGGHHH--HHHHHHT
T ss_pred HHHHHcCCCceEEEECCcHHHHHH--HHHHHHh
Confidence 35555543 899999999888874 5677775
No 23
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=29.06 E-value=52 Score=22.14 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=11.1
Q ss_pred EEecCccCCCcc
Q psy6025 30 LLCPSHVGIAGN 41 (89)
Q Consensus 30 ~WvP~H~GI~GN 41 (89)
|||||=+-|.|+
T Consensus 53 mWCPgWT~i~Ge 64 (102)
T 2job_A 53 MWCPGWTAIRGE 64 (102)
T ss_dssp EECBTTBSCEEE
T ss_pred EecCCccceecc
Confidence 599999999997
No 24
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=26.76 E-value=52 Score=23.33 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHhhcCC---CceEEEEecCccCCCccHHHHHhhh
Q psy6025 18 EELSSTD---SSIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 18 ~el~~~~---~~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
+.|...+ .+|.+.||||=--||- .|.++|+
T Consensus 40 ~~L~~~Gv~~~~i~v~~VPGafEiP~--aak~la~ 72 (168)
T 1ejb_A 40 ERMASLGVEENNIIIETVPGSYELPW--GTKRFVD 72 (168)
T ss_dssp HHHHHTTCCGGGEEEEECSSGGGHHH--HHHHHHH
T ss_pred HHHHHcCCCccceEEEECCcHHHHHH--HHHHHHh
Confidence 3555554 5799999999888873 5566665
No 25
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.04 E-value=63 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=27.9
Q ss_pred EecCccCCCc---cHHHHHhhhhhhhcc-ccchHHHHHHHHHHHHHHhh
Q psy6025 31 LCPSHVGIAG---NEEAKQATNDDVTHQ-ELFFDEIKINIEKKYLEEWN 75 (89)
Q Consensus 31 WvP~H~GI~G---NE~AD~~Ak~a~~~~-~~~~~~ik~~I~~kw~~~W~ 75 (89)
=+|.|.+... -+-.+-+. .+... -..+..||..|.++|.++|.
T Consensus 73 ~IpkHpdy~~~~~~~~~~~l~--~l~~~~~~~lE~LK~~L~~rY~~e~~ 119 (146)
T 2xze_A 73 KLPKHRDYKSAVIPEKKDTVK--KLKEIAFPKAEELKAELLKRYTKEYT 119 (146)
T ss_dssp TGGGSTTTTTCCCTTHHHHHH--HHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccCccchhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5799998865 33333222 23322 22467899999999998886
No 26
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=23.02 E-value=53 Score=23.13 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHhhc-CC---CceEEEEecCccCCCccHHHHHhhhh
Q psy6025 18 EELSS-TD---SSIEFLLCPSHVGIAGNEEAKQATND 50 (89)
Q Consensus 18 ~el~~-~~---~~i~~~WvP~H~GI~GNE~AD~~Ak~ 50 (89)
+.|.. .+ .+|.+.||||=--||- .|.++|+.
T Consensus 41 ~~l~~~~Gv~~~~i~v~~VPGafEiP~--aa~~la~~ 75 (159)
T 1kz1_A 41 ETMIEKHDVKLENIDIESVPGSWELPQ--GIRASIAR 75 (159)
T ss_dssp HHHHHHHCCCGGGEEEEECSSGGGHHH--HHHHHHHH
T ss_pred HHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 35555 33 5799999999887773 55666653
No 27
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.37 E-value=24 Score=22.72 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=5.9
Q ss_pred EEecCcc
Q psy6025 30 LLCPSHV 36 (89)
Q Consensus 30 ~WvP~H~ 36 (89)
=|||||+
T Consensus 58 gWvPG~v 64 (74)
T 1wfw_A 58 GWVPGSI 64 (74)
T ss_dssp EEEEGGG
T ss_pred CcccccE
Confidence 3999997
No 28
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=20.75 E-value=37 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.7
Q ss_pred CceEEEEecCcc
Q psy6025 25 SSIEFLLCPSHV 36 (89)
Q Consensus 25 ~~i~~~WvP~H~ 36 (89)
..++++++|||+
T Consensus 161 ~~~~~i~tpGHt 172 (317)
T 2zo4_A 161 KRLRVLWTPGHA 172 (317)
T ss_dssp EEEEEEECCSSS
T ss_pred ceEEEEECCCCC
Confidence 358888999996
Done!