Query psy6025
Match_columns 89
No_of_seqs 101 out of 106
Neff 3.5
Searched_HMMs 13730
Date Sat Aug 17 00:37:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jl1a_ c.55.3.1 (A:) RNase H 99.5 2.5E-14 1.8E-18 93.5 4.6 45 10-57 100-144 (152)
2 d1rila_ c.55.3.1 (A:) RNase H 99.3 1.8E-13 1.3E-17 90.4 2.9 44 9-55 101-144 (147)
3 d1mu2a1 c.55.3.1 (A:430-555) H 99.3 2.8E-13 2E-17 88.3 3.7 29 24-52 98-126 (126)
4 d1s1ta1 c.55.3.1 (A:430-539) H 94.7 0.0086 6.3E-07 37.8 2.6 26 8-35 85-110 (110)
5 d1xm8a_ d.157.1.2 (A:) Glyoxal 37.1 6.4 0.00047 26.9 1.5 14 24-37 101-114 (254)
6 d2qeda1 d.157.1.2 (A:1-251) Gl 30.6 9.5 0.00069 25.8 1.5 13 24-36 99-111 (251)
7 d1kn6a_ d.58.3.3 (A:) Prohormo 29.9 9.1 0.00066 22.1 1.1 11 40-50 12-22 (73)
8 d1qh5a_ d.157.1.2 (A:) Glyoxal 29.0 10 0.00076 25.8 1.5 13 24-36 99-111 (260)
9 d1rvv1_ c.16.1.1 (1:) Lumazine 22.5 40 0.0029 21.7 3.5 38 10-49 25-68 (154)
10 d2hu7a2 c.69.1.33 (A:322-581) 21.6 77 0.0056 19.5 4.7 31 18-49 216-248 (260)
11 d1c2ya_ c.16.1.1 (A:) Lumazine 21.4 41 0.003 21.8 3.3 39 9-49 25-68 (155)
12 d1xkta_ c.69.1.22 (A:) Fatty a 21.2 39 0.0028 19.6 2.9 25 25-49 254-279 (286)
13 d1k07a_ d.157.1.1 (A:) Zn meta 20.6 18 0.0013 23.2 1.3 14 24-37 137-150 (262)
14 d1di0a_ c.16.1.1 (A:) Lumazine 20.5 36 0.0027 21.7 2.9 24 24-49 35-58 (148)
15 d1nqua_ c.16.1.1 (A:) Lumazine 20.4 47 0.0034 21.4 3.5 23 25-49 46-68 (154)
No 1
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.45 E-value=2.5e-14 Score=93.55 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcccc
Q psy6025 10 PLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQEL 57 (89)
Q Consensus 10 ~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~~~ 57 (89)
++.+.+.+ + .....|.|.|||||+|++|||+||+||++|+.++.+
T Consensus 100 ~~~~~i~~--~-~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~ 144 (152)
T d1jl1a_ 100 DLWQRLDA--A-LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTL 144 (152)
T ss_dssp HHHHHHHH--H-TTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHH--H-hhcceeEEEEecccCCCccHHHHHHHHHHHHhCCCC
Confidence 44555542 2 334689999999999999999999999999987643
No 2
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.34 E-value=1.8e-13 Score=90.41 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHhhcCCCceEEEEecCccCCCccHHHHHhhhhhhhcc
Q psy6025 9 NPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDDVTHQ 55 (89)
Q Consensus 9 n~i~~~Iq~~el~~~~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~~~~ 55 (89)
.++.+++.. +. ....|.|.|||||+|++|||+||+||++|+.+.
T Consensus 101 ~dL~~~l~~--~~-~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~ 144 (147)
T d1rila_ 101 RDLWEALLL--AM-APHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144 (147)
T ss_dssp HHHHHHHHH--HH-TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHH--Hh-hhcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence 456666652 22 346799999999999999999999999998754
No 3
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.33 E-value=2.8e-13 Score=88.33 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=27.1
Q ss_pred CCceEEEEecCccCCCccHHHHHhhhhhh
Q psy6025 24 DSSIEFLLCPSHVGIAGNEEAKQATNDDV 52 (89)
Q Consensus 24 ~~~i~~~WvP~H~GI~GNE~AD~~Ak~a~ 52 (89)
...|.|.|||||+|++|||+||+||++|+
T Consensus 98 ~~~v~~~wV~gH~g~~gNe~AD~LA~~ai 126 (126)
T d1mu2a1 98 KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126 (126)
T ss_dssp CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence 46899999999999999999999999985
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=94.74 E-value=0.0086 Score=37.81 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=17.9
Q ss_pred CcHHHHHHHHHHhhcCCCceEEEEecCc
Q psy6025 8 ENPLVKRVQEEELSSTDSSIEFLLCPSH 35 (89)
Q Consensus 8 ~n~i~~~Iq~~el~~~~~~i~~~WvP~H 35 (89)
..++.++|.+ ++ .....|.|.|||||
T Consensus 85 ~~~l~~~il~-~l-~~~~~v~i~WVpgH 110 (110)
T d1s1ta1 85 ESELVNQIIE-QL-IKKEKVYLAWVPAH 110 (110)
T ss_dssp SCHHHHHHHH-HH-HHCSEEEEEECCSS
T ss_pred chHHHHHHHH-HH-hcCCceEEEEeCCC
Confidence 3456666652 33 33578999999999
No 5
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.06 E-value=6.4 Score=26.89 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.0
Q ss_pred CCceEEEEecCccC
Q psy6025 24 DSSIEFLLCPSHVG 37 (89)
Q Consensus 24 ~~~i~~~WvP~H~G 37 (89)
+..++++++|||+-
T Consensus 101 ~~~i~vl~TPGHT~ 114 (254)
T d1xm8a_ 101 GHEVHVMDTPGHTK 114 (254)
T ss_dssp TEEEEEEECCSSSS
T ss_pred CcEEEEeeccCCCC
Confidence 35688999999973
No 6
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Probab=30.59 E-value=9.5 Score=25.80 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.4
Q ss_pred CCceEEEEecCcc
Q psy6025 24 DSSIEFLLCPSHV 36 (89)
Q Consensus 24 ~~~i~~~WvP~H~ 36 (89)
+..++++.+|||+
T Consensus 99 ~~~~~vi~TPGHT 111 (251)
T d2qeda1 99 GEKFTLFATPGHT 111 (251)
T ss_dssp TEEEEEEECCSSS
T ss_pred CceEEEEECCCCC
Confidence 3568889999996
No 7
>d1kn6a_ d.58.3.3 (A:) Prohormone convertase 1 pro-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.88 E-value=9.1 Score=22.12 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=9.5
Q ss_pred ccHHHHHhhhh
Q psy6025 40 GNEEAKQATND 50 (89)
Q Consensus 40 GNE~AD~~Ak~ 50 (89)
|.|.||++|++
T Consensus 12 g~~~A~~iA~~ 22 (73)
T d1kn6a_ 12 GQEAASAIAEE 22 (73)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 78899999975
No 8
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.00 E-value=10 Score=25.84 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.1
Q ss_pred CCceEEEEecCcc
Q psy6025 24 DSSIEFLLCPSHV 36 (89)
Q Consensus 24 ~~~i~~~WvP~H~ 36 (89)
+-.++++.+|||+
T Consensus 99 ~~~~~vi~TPGHT 111 (260)
T d1qh5a_ 99 SLNVKCLATPCHT 111 (260)
T ss_dssp TEEEEEEECCSSS
T ss_pred eeeeEEEEecCCC
Confidence 3457888999996
No 9
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=22.47 E-value=40 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=22.8
Q ss_pred HHHHHHHH---HHhhcCC---CceEEEEecCccCCCccHHHHHhhh
Q psy6025 10 PLVKRVQE---EELSSTD---SSIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 10 ~i~~~Iq~---~el~~~~---~~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
+|+....+ ..|...+ .+|.+.||||=--|| =.|+++++
T Consensus 25 ~I~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP--~~~~~~~~ 68 (154)
T d1rvv1_ 25 FITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIP--FAAKKMAE 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcEEEEECceeeHH--HHHHHHhc
Confidence 45554442 3454443 469999999977776 34455553
No 10
>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Probab=21.59 E-value=77 Score=19.47 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=21.3
Q ss_pred HHhhcCCCceEEEEecC--ccCCCccHHHHHhhh
Q psy6025 18 EELSSTDSSIEFLLCPS--HVGIAGNEEAKQATN 49 (89)
Q Consensus 18 ~el~~~~~~i~~~WvP~--H~GI~GNE~AD~~Ak 49 (89)
+.|.+.+..+++...|| | ++..-|.+.++..
T Consensus 216 ~~l~~~~~~~~~~~~~g~~H-~~~~~e~~~~~~~ 248 (260)
T d2hu7a2 216 GELLARGKTFEAHIIPDAGH-AINTMEDAVKILL 248 (260)
T ss_dssp HHHHHTTCCEEEEEETTCCS-SCCBHHHHHHHHH
T ss_pred HHHHHCCCCeEEEEECcCCC-CCCChHhHHHHHH
Confidence 35667788899999996 8 4655555555443
No 11
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=21.39 E-value=41 Score=21.76 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=23.1
Q ss_pred cHHHHHHHH---HHhhcCC--CceEEEEecCccCCCccHHHHHhhh
Q psy6025 9 NPLVKRVQE---EELSSTD--SSIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 9 n~i~~~Iq~---~el~~~~--~~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
.+|+....+ +.|...+ ..+.+.||||=--|| =.|.++++
T Consensus 25 ~~It~~L~~ga~~~l~~~g~~~~i~~~~VPGa~EiP--~~~~~l~~ 68 (155)
T d1c2ya_ 25 EFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELG--VTAQALGK 68 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEeccHHHHH--HHHHHHHh
Confidence 345544332 3454433 468999999977665 34556554
No 12
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.18 E-value=39 Score=19.57 Aligned_cols=25 Identities=4% Similarity=0.080 Sum_probs=18.5
Q ss_pred CceEEEEecC-ccCCCccHHHHHhhh
Q psy6025 25 SSIEFLLCPS-HVGIAGNEEAKQATN 49 (89)
Q Consensus 25 ~~i~~~WvP~-H~GI~GNE~AD~~Ak 49 (89)
..+++..||| |--+-.++.+++.|.
T Consensus 254 ~~~~~~~i~g~H~~~le~p~~~~va~ 279 (286)
T d1xkta_ 254 GKVSVHVIEGDHRTLLEGSGLESIIS 279 (286)
T ss_dssp SCEEEEEESSCTTTTTC-CHHHHHHH
T ss_pred CCCEEEEEcCCCccccCCccHHHHHH
Confidence 5688888888 877777877777774
No 13
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Probab=20.61 E-value=18 Score=23.21 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.0
Q ss_pred CCceEEEEecCccC
Q psy6025 24 DSSIEFLLCPSHVG 37 (89)
Q Consensus 24 ~~~i~~~WvP~H~G 37 (89)
+..+++.++|||+-
T Consensus 137 ~~~~~~~~~PGHt~ 150 (262)
T d1k07a_ 137 GTVLTAHLTPGHTR 150 (262)
T ss_dssp TEEEEEEECCSSST
T ss_pred ccccccccCCCCCC
Confidence 34688889999974
No 14
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=20.47 E-value=36 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=17.1
Q ss_pred CCceEEEEecCccCCCccHHHHHhhh
Q psy6025 24 DSSIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 24 ~~~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
..+|.+.||||=--||- .|+++++
T Consensus 35 ~~~i~~~~VPGa~EiP~--aa~~l~~ 58 (148)
T d1di0a_ 35 SVEVEIFDVPGAYEIPL--HAKTLAR 58 (148)
T ss_dssp SEEEEEEEESSGGGHHH--HHHHHHH
T ss_pred cceeEEEEcCChhhhHH--HHHHHHh
Confidence 35699999999776663 4556654
No 15
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=20.37 E-value=47 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.1
Q ss_pred CceEEEEecCccCCCccHHHHHhhh
Q psy6025 25 SSIEFLLCPSHVGIAGNEEAKQATN 49 (89)
Q Consensus 25 ~~i~~~WvP~H~GI~GNE~AD~~Ak 49 (89)
..|.+.||||=--|| -.|.++++
T Consensus 46 ~~i~v~~VPGa~EiP--~~~~~l~~ 68 (154)
T d1nqua_ 46 EDITLVRVPGSWEIP--VAAGELAR 68 (154)
T ss_dssp GGEEEEEESSGGGHH--HHHHHHHT
T ss_pred hheeeEEeCCHHHhH--HHHHHHHh
Confidence 469999999987777 45555554
Done!