RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6025
         (89 letters)



>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
          structural genomics, riken structural
          genomics/proteomics initiative, RSGI; NMR {Mus
          musculus} SCOP: d.15.1.1
          Length = 102

 Score = 28.8 bits (64), Expect = 0.11
 Identities = 5/39 (12%), Positives = 18/39 (46%)

Query: 51 DVTHQELFFDEIKINIEKKYLEEWNIQNGPILLVQTKTN 89
               ++ + E  +  +   L  + +++G ++++  K N
Sbjct: 48 PAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86


>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural
          genomics, NPPSFA, national on protein structural and
          functional analyses; 1.80A {Aeropyrum pernix}
          Length = 188

 Score = 26.5 bits (58), Expect = 1.0
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 10 PLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATNDD---VTHQELFFDEIKINI 66
           ++ R+       + SS     C   + +   E             TH  +   E++  +
Sbjct: 23 KVLARINRPSKIVSTSS-----CTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVERVL 77

Query: 67 EKKYLEEWNIQNGPILLVQTKT 88
           + +   W    GPIL ++ + 
Sbjct: 78 RRGFTNLWLKVTGPILHLRVEG 99


>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein,
           structural genomics, J center for structural genomics,
           JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
          Length = 208

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 10  PLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEEAKQATN---DDVTHQELFFDEIKINI 66
            L+  +   +   T SS     C   + +   E+     +       H+ +   E+    
Sbjct: 41  ELLDLINSFDDFVTLSS-----CSGRIAVVDLEKPGDKASSLFLGKWHEGVEVSEVAEAA 95

Query: 67  EKKYLEEWNIQNGPILLVQTKT 88
            +     W IQ  PI+ V  + 
Sbjct: 96  LRSRKVAWLIQYPPIIHVACRN 117


>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
           center for structu genomics, MCSG, TIM barrel,
           glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
          Length = 552

 Score = 25.0 bits (54), Expect = 3.8
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 69  KYLEEWNIQNGPILLVQT 86
            +L+  +     +++VQ 
Sbjct: 186 THLKAKDAAQKTVIMVQV 203


>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
           nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
           diarylpyrimidine, DAPY, DNA recombination; HET: T27;
           1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
           3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
           1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
           2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
          Length = 557

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 8   ENPLVKRVQEEELSSTDSSIEFLLCPSHVGIAGNEE 43
           E+ LV ++ E+ +      + +   P+H GI GNE+
Sbjct: 516 ESELVNQIIEQLIKKEKVYLAW--VPAHKGIGGNEQ 549


>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
           accase, ligase, transferase; 2.2A {Mycobacterium
           tuberculosis} PDB: 2a7s_A
          Length = 548

 Score = 24.8 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 34  SHVGIAGNEEAKQATNDDVTHQEL 57
           S + I G +  K  T ++VT +EL
Sbjct: 212 SQMFITGPDVIKTVTGEEVTMEEL 235


>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
           PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
           FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
           3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
          Length = 530

 Score = 24.5 bits (54), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 34  SHVGIAGNEEAKQATNDDVTHQEL 57
           SH+ I G +  K  T +DV  +EL
Sbjct: 201 SHMFITGPDVIKTVTGEDVGFEEL 224


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,289,295
Number of extensions: 61792
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 14
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)