BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6026
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/92 (92%), Positives = 89/92 (96%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LFYSFFKSLVGKDVVVELKND+SICGTLHSVDQYLNIKLTDISVTDP+KYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQDATRKEAVN 95
FIRGSVVRYVQLP DEVDTQLLQDA RKEA+
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQ 92
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/92 (92%), Positives = 89/92 (96%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LFYSFFKSLVGKDVVVELKND+SICGTLHSVDQYLNIKLTDISVTDP+KYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQDATRKEAVN 95
FIRGSVVRYVQLP DEVDTQLLQDA RKEA+
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQ 92
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2
OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LF+SF+KSLVGK++ VELKND+SI G L SVDQ+LNIKL DI V + DKYP+M+SVKNC
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQDATRKEA 93
FIRGSVVRYV LP ++VD + LQD +R EA
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEA 90
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 74/91 (81%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LF+SFFK+LV ++VVVELKND+ I GTL SVDQ+LN+KL +IS TD KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQDATRKEAV 94
FIRGS VRYV L + VDT LLQDATR+E +
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREVM 91
>sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1
Length = 96
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 71/95 (74%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LFYSFFK+L+ +V VELKND+SI G L SVDQ+LN+KL +ISV D KYPHM +VK+
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQDATRKEAVNATR 98
FIRGSVVRYV + VDT LL DA R++ N R
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRDLANNKR 95
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3
SV=1
Length = 97
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKY----PHMLS 59
+LF+ +FKS + +++V LKND+SI G L +VD +LNIK+ ++ +++ + +
Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITN 60
Query: 60 VKNCFIRGSVVRYVQLPGDEVDTQLLQDATR 90
++ C IRGS ++ V+L + ++ +++ ATR
Sbjct: 61 IQLCSIRGSAIKSVELKKNGLEEHMVE-ATR 90
>sp|Q8SQK1|LSM2_ENCCU Probable U6 snRNA-associated Sm-like protein LSm2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=LSM2 PE=3
SV=1
Length = 94
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+LFY FF+S +G V V LK V + G L +D YLN+ L D+ + +P + S+ C
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRIL--SSHPGLSSISVC 58
Query: 64 FIRGSVVRYVQLPGDEVDTQLLQ 86
IRGS ++Y+ + + D +LLQ
Sbjct: 59 SIRGSSIKYILV---DKDAKLLQ 78
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ ++VELKN + G L S D ++NI L ++ T D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVDTQLLQDATR 90
C+IRGS ++Y+++P DE+ + ++A +
Sbjct: 58 ECYIRGSTIKYLRIP-DEIIDMVREEAAK 85
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ ++VELKN + G L S D ++NI L ++ T D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVD 81
C+IRGS ++Y+++P + +D
Sbjct: 58 ECYIRGSTIKYLRIPDEIID 77
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ ++VELKN + G L S D ++NI L ++ T D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVD 81
C+IRGS ++Y+++P + +D
Sbjct: 58 ECYIRGSTIKYLRIPDEIID 77
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S ++ G ++VELKN + G L + D ++NI L ++ T D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF---WKIQ 57
Query: 62 NCFIRGSVVRYVQLPGDEV 80
+C+IRG+ ++Y+ +P DE+
Sbjct: 58 SCYIRGNTIKYISVP-DEI 75
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ G ++VELKN + G L + D ++NI L ++ T D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVDTQLLQDATRK 91
C+IRG+ ++Y+++P + +D +Q+ T K
Sbjct: 58 ECYIRGNTIKYLRVPDEVIDK--VQEETSK 85
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ G ++VELK+ + G L + D ++NI L ++ T D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVDTQLLQDATRKEA 93
+C+IRG+ ++Y+++P + +D +Q+ T+ A
Sbjct: 58 DCYIRGNTIKYLRVPDEVIDK--VQEETKSRA 87
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 63
+L + + G+ ++VELKN + G L + D Y+N+ L ++ T PD + C
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDG-DKFFRLPEC 59
Query: 64 FIRGSVVRYVQLPGDEVDTQLL-QDATRKE 92
+IRG+ ++Y+++ DEV +Q+ Q A ++E
Sbjct: 60 YIRGNNIKYLRI-QDEVLSQVAKQQAQQRE 88
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVK 61
+L S K+ G ++VELKN + G L + D ++NI L ++ T D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
Query: 62 NCFIRGSVVRYVQLPGDEVDTQLLQDA 88
C++RG+ ++Y+++P DEV ++ ++A
Sbjct: 58 ECYVRGNTIKYLRVP-DEVIDKVQEEA 83
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L +S+T +K P + + IRG+
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTLSIRGN 63
Query: 69 VVRYVQLPGD-EVDTQLLQDATRKE 92
+RY+ LP +DT L+ D RK+
Sbjct: 64 NIRYIILPDPLALDTLLIDDEPRKK 88
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus
GN=Lsm10 PE=1 SV=1
Length = 122
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
+ L G+ V+L+++ G + +VD ++NI+L +++ T D++ H + + + F+ G
Sbjct: 20 LLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYT--DRWGHQVELDDLFVTGR 77
Query: 69 VVRYVQLPGDEVD 81
VRYV +P D VD
Sbjct: 78 NVRYVHIP-DGVD 89
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ SVD +N L + +T + P + V+ IRG+
Sbjct: 6 FLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETLSIRGN 63
Query: 69 VVRYVQLPGD-EVDTQLLQDATR 90
+RY LP +DT L+ D+T+
Sbjct: 64 NIRYYILPDSLPLDTLLIDDSTK 86
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
+ L G+ V+L+++ G + +VD ++NI+L ++ TD ++ H + + + F+ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTD--RWGHQVKLDDLFVTGR 77
Query: 69 VVRYVQLPGD 78
VRYV +P D
Sbjct: 78 NVRYVHIPDD 87
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFI 65
S K+ ++VELKN + G L + D ++NI L D+ T D DK+ + ++
Sbjct: 6 SLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKF---FKMSEAYV 62
Query: 66 RGSVVRYVQLPGDEVD 81
RGS ++Y+++P VD
Sbjct: 63 RGSTIKYLRIPETVVD 78
>sp|Q54F84|Y1015_DICDI Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium
discoideum GN=DDB_G0291015 PE=4 SV=1
Length = 137
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 10 FKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPD-KYPHMLSVKNCFIRGS 68
F +L G + ++L+++ I GT+ +VD YLNI+L+D +T+ K V+ I+
Sbjct: 35 FTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSR 94
Query: 69 VVRYVQLPGDEVD 81
+R++Q+P D++D
Sbjct: 95 NIRFIQIP-DKID 106
>sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1
Length = 146
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 6 FYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDP 51
+F K L + V +ELKN ++ GTL SV +N LTD+ +T P
Sbjct: 3 LVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLP 48
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN I GT+ VD +N L + +T ++ P + ++ IRG+
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLETLSIRGN 63
Query: 69 VVRYVQLPGD-EVDTQLLQDATRKEA 93
+RY LP ++T L+ D + +
Sbjct: 64 NIRYFILPDSLPLETLLIDDTPKSKT 89
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L + +T ++ P + ++ IRG+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 63
Query: 69 VVRYVQLP 76
+RY LP
Sbjct: 64 NIRYFILP 71
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L + +T ++ P + ++ IRG+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 63
Query: 69 VVRYVQLP 76
+RY LP
Sbjct: 64 NIRYFILP 71
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L + +T ++ P + ++ IRG+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 63
Query: 69 VVRYVQLP 76
+RY LP
Sbjct: 64 NIRYFILP 71
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L + +T ++ P + ++ IRG+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 63
Query: 69 VVRYVQLP 76
+RY LP
Sbjct: 64 NIRYFILP 71
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDIS--VTDPDKYPHMLSVKNCFI 65
SF ++G V+V+L N + G L SVD Y+NI L V K H + F+
Sbjct: 16 SFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 66 RGSVVRYV 73
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDIS--VTDPDKYPHMLSVKNCFI 65
SF ++G V+V+L N + G L SVD Y+NI L V K H + F+
Sbjct: 16 SFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 66 RGSVVRYV 73
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 7 YSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVK--NCF 64
++FFK +G+ VVV+L N V G L VD +NI + + L K +CF
Sbjct: 18 FNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTE----EYLNGQLKTKYGDCF 73
Query: 65 IRGSVVRYV 73
+RG+ V Y+
Sbjct: 74 LRGNNVLYI 82
>sp|Q6CPS7|LSM6_KLULA U6 snRNA-associated Sm-like protein LSm6 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=LSM6 PE=3 SV=1
Length = 80
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISV-------TDPDKYPHMLSV 60
SF ++++GK V V+L + + G L S+D ++N+ ++ +S KYP
Sbjct: 10 SFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYP----- 64
Query: 61 KNCFIRGSVVRYV 73
F+RGS V Y+
Sbjct: 65 SEVFLRGSQVLYI 77
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLS--VKNCFIR 66
F +++GK V V+L + + G L S+D ++N+ L++ S + HML + F+R
Sbjct: 15 FLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTS-EHFESNAHMLKRYENDVFLR 73
Query: 67 GSVVRYV 73
G+ V Y+
Sbjct: 74 GTQVMYI 80
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=LSM6 PE=3 SV=1
Length = 85
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDIS-VTDPDKYPHMLSVKN-CFI 65
+F +++GK V V+L + + GTL S+D ++N+ L D S + ++ P + ++ F+
Sbjct: 15 TFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESDVFL 74
Query: 66 RGSVVRYV 73
RG+ V Y+
Sbjct: 75 RGTQVMYI 82
>sp|O59734|RUXF_SCHPO Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1
Length = 78
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45
F + L+GK V+V LK GTL SVD Y+N++L +
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLN 47
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
SF ++G V V+L + V G L SVD Y+NI L + S + F+RG
Sbjct: 16 SFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKR--SYGDAFVRG 73
Query: 68 SVVRYV 73
+ V Y+
Sbjct: 74 NNVMYI 79
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 15 GKDVVVELKNDVSICGTLHSVDQYLNIKLTDI-------SVTDPDKYPHMLSVK--NCFI 65
G+ + +ELKN I G L +VD ++N+ L+++ ++ D +VK +I
Sbjct: 12 GQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYI 71
Query: 66 RGSVVRYVQLPGDEVD 81
RG+ +++++L + +D
Sbjct: 72 RGTFIKFIKLQDNIID 87
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKL--TDISVTDPDKYPHMLSVKNCFI 65
F ++G V V+L + V G L SVD Y+NI L T+ V + S + F+
Sbjct: 16 GFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKR----RSYGDAFV 71
Query: 66 RGSVVRYV 73
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDI-SVTDPDKYPHMLSVKNCFIRG 67
F ++G V V L N V G L S+D Y+NI L + D+ + + FIRG
Sbjct: 20 FLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNY---GDVFIRG 76
Query: 68 SVVRYVQ 74
+ V Y+
Sbjct: 77 NNVLYIS 83
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+F ++G V V+L + V G L SVD Y+NI L K S + FIRG
Sbjct: 13 AFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR--SYGDAFIRG 70
Query: 68 SVVRYV 73
+ V Y+
Sbjct: 71 NNVLYI 76
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD-ISVTDPDKYPHMLSVKNCFIRG 67
F K ++GK+V V L + + G L +D Y+NI L + D K S + FIRG
Sbjct: 18 FLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKN---SYGDAFIRG 74
Query: 68 SVVRYV 73
+ V Y+
Sbjct: 75 NNVMYI 80
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKL--TDISVTDPDKYPHMLSVKNCFIR 66
F K ++G+ VVV+L + V G L +D Y+NI L T+ V K + + FIR
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY----GDAFIR 66
Query: 67 GSVVRYV 73
G+ V Y+
Sbjct: 67 GNNVLYI 73
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKL--TDISVTDPDKYPHMLSVKNCFIR 66
F K ++G+ VVV+L + V G L +D Y+NI L T+ V K + + FIR
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY----GDAFIR 66
Query: 67 GSVVRYV 73
G+ V Y+
Sbjct: 67 GNNVLYI 73
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+F ++G V V+L + V G L SVD Y+NI L K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRR--SYGDAFIRG 71
Query: 68 SVVRYV 73
+ V Y+
Sbjct: 72 NNVLYI 77
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+F ++G V V+L + V G L SVD Y+NI L K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKR--SYGDAFIRG 71
Query: 68 SVVRYV 73
+ V Y+
Sbjct: 72 NNVLYI 77
>sp|P0CR24|LSM6_CRYNJ U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=LSM6 PE=3 SV=1
Length = 88
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F +++VGK V V + + V G L +D Y+N+ L + + +CF+RG+
Sbjct: 20 FLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEV--KTAAYGDCFLRGN 77
Query: 69 VVRYV 73
V Y+
Sbjct: 78 NVLYI 82
>sp|P0CR25|LSM6_CRYNB U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=LSM6 PE=3 SV=1
Length = 88
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F +++VGK V V + + V G L +D Y+N+ L + + +CF+RG+
Sbjct: 20 FLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEV--KTAAYGDCFLRGN 77
Query: 69 VVRYV 73
V Y+
Sbjct: 78 NVLYI 82
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1 MERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDI-SVTDPDKYPHMLS 59
++R+ F ++G V V+L N V G L ++D Y+N+ L + V D H
Sbjct: 7 LDRIDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGD 66
Query: 60 VKNCFIRGSVVRYV 73
V F+RG+ V Y+
Sbjct: 67 V---FLRGNNVLYI 77
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD----ISVTDPDKYPHMLSVKNCF 64
F K +VGK V+V L + V G L +D Y+NI L ++ ++Y + F
Sbjct: 31 FLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRY------GDAF 84
Query: 65 IRGSVVRYVQ 74
IRG+ V Y+
Sbjct: 85 IRGNNVLYIS 94
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+F + G V V+L + V G L SVD Y+NI L K S + F+RG
Sbjct: 14 AFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRR--SYGDAFVRG 71
Query: 68 SVVRYVQ 74
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKL--TDISVTDPDKYPHMLSVKNCFI 65
F ++G V V+L + V G L SVD Y+NI L T+ + + S + F+
Sbjct: 16 GFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKR----RSYGDAFV 71
Query: 66 RGSVVRYV 73
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,191,606
Number of Sequences: 539616
Number of extensions: 1199844
Number of successful extensions: 3156
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3068
Number of HSP's gapped (non-prelim): 85
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)