Query psy6026
Match_columns 98
No_of_seqs 113 out of 1016
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 00:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 100.0 6.7E-29 2.3E-33 166.4 11.4 90 1-92 1-90 (126)
2 1d3b_A Protein (small nuclear 100.0 1.5E-28 5.2E-33 151.4 10.6 75 1-77 1-75 (75)
3 1b34_A Protein (small nuclear 100.0 4.8E-28 1.6E-32 160.7 9.9 89 4-94 1-90 (119)
4 4emh_A Probable U6 snRNA-assoc 99.9 8.4E-28 2.9E-32 156.7 9.3 89 4-93 15-103 (105)
5 1ljo_A Archaeal SM-like protei 99.9 3.3E-25 1.1E-29 136.6 9.3 73 4-78 4-77 (77)
6 1th7_A SnRNP-2, small nuclear 99.9 9.8E-25 3.3E-29 135.7 10.4 76 1-78 3-80 (81)
7 1i4k_A Putative snRNP SM-like 99.9 7.6E-25 2.6E-29 134.8 9.5 73 4-78 3-75 (77)
8 1h64_1 SnRNP SM-like protein; 99.9 8.7E-25 3E-29 134.0 9.3 73 4-78 3-75 (75)
9 3s6n_F Small nuclear ribonucle 99.9 1.4E-24 4.8E-29 136.8 9.1 76 2-79 3-78 (86)
10 4emk_B U6 snRNA-associated SM- 99.9 1.3E-24 4.6E-29 133.4 7.9 72 4-77 3-74 (75)
11 1n9r_A SMF, small nuclear ribo 99.9 2E-24 6.8E-29 137.9 7.9 74 2-77 18-92 (93)
12 1m5q_A SMAP3, small nuclear ri 99.9 1.1E-23 3.9E-28 141.6 10.3 80 7-92 2-81 (130)
13 1i8f_A Putative snRNP SM-like 99.9 1.9E-23 6.3E-28 130.0 9.2 72 3-77 9-80 (81)
14 1mgq_A SM-like protein; LSM, R 99.9 1.9E-23 6.6E-28 130.5 9.1 72 2-75 12-83 (83)
15 4emk_A U6 snRNA-associated SM- 99.9 6.3E-23 2.1E-27 131.3 10.1 74 3-78 18-92 (94)
16 3s6n_G Small nuclear ribonucle 99.9 8.7E-23 3E-27 125.7 8.1 72 5-78 4-75 (76)
17 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.5E-22 5.2E-27 129.6 9.0 79 5-83 10-93 (96)
18 4emg_A Probable U6 snRNA-assoc 99.9 6.4E-22 2.2E-26 126.2 9.5 75 2-76 6-91 (93)
19 3s6n_E Small nuclear ribonucle 99.9 1.3E-21 4.4E-26 124.7 7.3 73 4-77 15-91 (92)
20 2fwk_A U6 snRNA-associated SM- 99.9 9.4E-22 3.2E-26 130.6 6.7 76 3-78 26-114 (121)
21 1d3b_B Protein (small nuclear 99.8 1.1E-21 3.6E-26 124.1 6.2 75 4-78 3-85 (91)
22 4emk_C U6 snRNA-associated SM- 99.8 8.9E-21 3E-25 124.8 9.3 81 6-86 24-111 (113)
23 1b34_B Protein (small nuclear 99.8 1.9E-20 6.5E-25 123.8 8.9 76 3-78 25-114 (118)
24 3pgw_B SM B; protein-RNA compl 99.8 1.1E-18 3.9E-23 126.4 9.1 76 3-78 2-85 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 1.2E-09 4.1E-14 68.5 8.8 65 5-78 8-73 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.7 0.00054 1.8E-08 42.8 9.2 67 12-78 10-84 (88)
27 2fb7_A SM-like protein, LSM-14 97.4 0.00049 1.7E-08 43.5 6.3 71 7-77 11-89 (95)
28 3ahu_A Protein HFQ; SM-like mo 97.2 0.00049 1.7E-08 42.1 4.2 56 8-77 14-71 (78)
29 1y96_B Gemin7, SIP3, GEM-assoc 97.2 0.0046 1.6E-07 38.3 8.5 64 6-76 20-84 (85)
30 2ylb_A Protein HFQ; RNA-bindin 97.1 0.00061 2.1E-08 41.2 4.2 56 7-77 11-68 (74)
31 1u1s_A HFQ protein; SM-like ba 97.1 0.00062 2.1E-08 42.0 4.2 56 7-77 9-66 (82)
32 1kq1_A HFQ, HOST factor for Q 97.0 0.0014 4.8E-08 39.9 5.1 57 7-77 9-67 (77)
33 3sb2_A Protein HFQ; SM-like, R 96.8 0.0015 5.2E-08 40.0 4.2 55 8-77 11-67 (79)
34 2y90_A Protein HFQ; RNA-bindin 96.8 0.0012 4.1E-08 42.4 3.5 56 7-77 11-68 (104)
35 2qtx_A Uncharacterized protein 96.6 0.0043 1.5E-07 37.2 5.0 35 9-43 17-53 (71)
36 4a53_A EDC3; RNA binding prote 96.6 0.0039 1.3E-07 41.1 5.0 55 10-77 7-63 (125)
37 2vc8_A Enhancer of mRNA-decapp 96.1 0.025 8.7E-07 34.8 6.3 61 11-76 5-67 (84)
38 3hfo_A SSR3341 protein; HFQ, S 94.9 0.2 6.9E-06 29.7 7.2 55 7-74 11-67 (70)
39 1ycy_A Conserved hypothetical 94.6 0.22 7.7E-06 29.2 6.8 62 7-75 8-69 (71)
40 3hfn_A ASL2047 protein; HFQ, S 94.1 0.39 1.3E-05 28.7 7.3 55 7-74 13-69 (72)
41 2rm4_A CG6311-PB, DM EDC3; enh 93.0 0.83 2.8E-05 28.8 7.6 61 12-76 9-70 (103)
42 2eay_A Biotin [acetyl-COA-carb 87.9 0.45 1.5E-05 33.6 3.4 47 13-67 186-232 (233)
43 1ib8_A Conserved protein SP14. 87.6 0.52 1.8E-05 31.8 3.5 30 9-38 98-131 (164)
44 3rux_A BIRA bifunctional prote 86.1 1.3 4.6E-05 31.9 5.2 33 13-45 222-254 (270)
45 2dxu_A Biotin--[acetyl-COA-car 85.2 0.66 2.3E-05 32.8 3.1 30 14-45 188-217 (235)
46 1bia_A BIRA bifunctional prote 84.7 2.5 8.5E-05 30.9 6.2 49 12-67 270-318 (321)
47 2ej9_A Putative biotin ligase; 84.7 2.9 0.0001 29.4 6.3 32 13-45 190-221 (237)
48 3by7_A Uncharacterized protein 81.4 7.7 0.00026 24.3 6.7 58 19-78 7-77 (100)
49 4hcz_A PHD finger protein 1; p 78.5 3.7 0.00012 23.4 4.0 25 14-38 6-30 (58)
50 2e12_A SM-like motif, hypothet 76.1 2.9 9.8E-05 26.0 3.3 24 10-33 22-46 (101)
51 3rkx_A Biotin-[acetyl-COA-carb 74.2 7.6 0.00026 28.5 5.9 32 13-45 277-308 (323)
52 2xk0_A Polycomb protein PCL; t 68.1 9.1 0.00031 22.5 4.0 21 14-34 18-38 (69)
53 2m0o_A PHD finger protein 1; t 65.1 3.3 0.00011 24.9 1.7 25 14-38 29-53 (79)
54 2eqj_A Metal-response element- 63.7 12 0.00041 21.8 4.0 25 14-38 16-40 (66)
55 1sg5_A ORF, hypothetical prote 62.2 3.6 0.00012 25.0 1.6 24 10-33 20-43 (86)
56 2e5p_A Protein PHF1, PHD finge 58.8 17 0.00057 21.2 4.0 25 14-38 12-36 (68)
57 2qqr_A JMJC domain-containing 58.1 13 0.00045 23.8 3.8 35 13-47 7-43 (118)
58 3uby_A DNA-3-methyladenine gly 56.4 17 0.00059 25.6 4.5 33 8-40 18-50 (219)
59 1zq1_A Glutamyl-tRNA(Gln) amid 51.5 11 0.00037 29.2 3.0 30 5-34 2-37 (438)
60 3bfm_A Biotin protein ligase-l 50.6 25 0.00086 24.3 4.6 28 13-45 192-219 (235)
61 2e5q_A PHD finger protein 19; 48.9 17 0.0006 20.8 2.9 25 14-38 10-34 (63)
62 3fb9_A Uncharacterized protein 41.0 42 0.0014 20.5 4.0 30 8-37 18-51 (90)
63 3tee_A Flagella basal BODY P-r 37.7 20 0.0007 24.9 2.5 23 12-34 168-190 (219)
64 3kl9_A PEPA, glutamyl aminopep 35.3 31 0.0011 25.5 3.3 24 11-34 95-118 (355)
65 4a8c_A Periplasmic PH-dependen 33.3 63 0.0022 24.3 4.8 31 16-46 88-118 (436)
66 1ky9_A Protease DO, DEGP, HTRA 33.3 62 0.0021 24.5 4.7 31 16-46 111-141 (448)
67 2qs8_A XAA-Pro dipeptidase; am 32.8 83 0.0028 22.5 5.2 42 33-75 1-42 (418)
68 3stj_A Protease DEGQ; serine p 28.4 77 0.0026 23.1 4.4 30 16-45 88-117 (345)
69 2d6f_A Glutamyl-tRNA(Gln) amid 28.4 44 0.0015 25.8 3.1 27 7-34 8-37 (435)
70 3frn_A Flagellar protein FLGA; 28.0 42 0.0014 24.5 2.8 23 12-34 237-260 (278)
71 3sti_A Protease DEGQ; serine p 26.4 83 0.0028 21.8 4.1 30 16-45 88-117 (245)
72 2xdp_A Lysine-specific demethy 25.8 90 0.0031 20.0 3.9 24 13-36 66-89 (123)
73 3mkv_A Putative amidohydrolase 25.5 1.4E+02 0.0049 19.8 5.1 35 40-75 5-39 (426)
74 1nh2_D Transcription initiatio 25.2 95 0.0033 19.9 3.9 30 22-51 55-87 (121)
75 3tjo_A Serine protease HTRA1; 24.5 1.2E+02 0.0041 20.5 4.6 31 15-45 86-116 (231)
76 3pv2_A DEGQ; trypsin fold, PDZ 24.3 76 0.0026 24.0 3.8 31 16-46 102-132 (451)
77 4f0r_A 5-methylthioadenosine/S 24.0 1.7E+02 0.0057 21.0 5.6 37 38-74 5-41 (447)
78 3lgi_A Protease DEGS; stress-s 23.3 1.2E+02 0.0042 20.3 4.5 29 16-44 77-105 (237)
79 2dir_A Thump domain-containing 23.0 76 0.0026 18.7 3.0 23 15-37 74-96 (98)
80 2p5z_X Type VI secretion syste 22.6 1.1E+02 0.0037 23.1 4.4 28 10-37 58-96 (491)
81 2equ_A PHD finger protein 20-l 22.4 1.2E+02 0.0041 17.4 4.0 25 14-38 12-36 (74)
82 1lcy_A HTRA2 serine protease; 22.0 1.3E+02 0.0043 21.5 4.5 30 16-45 71-100 (325)
83 1te0_A Protease DEGS; two doma 20.7 1.4E+02 0.0047 21.2 4.4 30 16-45 66-95 (318)
84 1nvp_D Transcription initiatio 20.6 1.6E+02 0.0056 18.3 5.7 30 22-51 51-83 (108)
85 3fso_A Integrin beta-4, GP150; 20.2 60 0.002 20.2 2.1 33 15-47 70-103 (123)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.96 E-value=6.7e-29 Score=166.42 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=81.4
Q ss_pred CcccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCccc
Q psy6026 1 MERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGDEV 80 (98)
Q Consensus 1 ~~~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~~~ 80 (98)
|..+.|++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++.++++ ...++.+||||++|+||++||...
T Consensus 1 ~~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~--~~~l~~v~IRGnnI~~I~lpd~l~ 78 (126)
T 2y9a_D 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR--VAQLEQVYIRGSKIRFLILPDMLK 78 (126)
T ss_dssp ---CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC--CEEEEEEEECGGGEEEEECCSSCS
T ss_pred CCcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc--EeecccEEEeCCEEEEEEcccccc
Confidence 778999999999999999999999999999999999999999999999987765 468999999999999999999988
Q ss_pred ccHHhHHHHHHH
Q psy6026 81 DTQLLQDATRKE 92 (98)
Q Consensus 81 d~~~~~~~~r~~ 92 (98)
+.++|++..++.
T Consensus 79 ~~~~l~~~~~k~ 90 (126)
T 2y9a_D 79 NAPMLKSMKNKN 90 (126)
T ss_dssp SSSHHHHHHHHH
T ss_pred chHHhhhhhhcc
Confidence 889998877764
No 2
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.96 E-value=1.5e-28 Score=151.36 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=68.8
Q ss_pred CcccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 1 MERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 1 ~~~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
|..+.|++||++++|++|+|+||||++|+|+|.+||+|||++|+||+++.+++. ...++.+||||++|+||++||
T Consensus 1 ~~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~--~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR--VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp ---CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEECGGGEEEEEECC
T ss_pred CCccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc--EEEcCeEEEeCCEEEEEEcCC
Confidence 778999999999999999999999999999999999999999999999987765 568999999999999999996
No 3
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.95 E-value=4.8e-28 Score=160.70 Aligned_cols=89 Identities=27% Similarity=0.444 Sum_probs=73.9
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc-cccc
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD-EVDT 82 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~-~~d~ 82 (98)
|+|++||++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..+++ ...++.+||||++|+||++||. .+|+
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~--~~~lg~v~IRG~nI~~I~~pd~l~~d~ 78 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNRE--PVQLETLSIRGNNIRYFILPDSLPLDT 78 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSC--CEEEEEEEECGGGEEEEECCTTCCHHH
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCc--eeEcceEEEcCCeEEEEEeccccccch
Confidence 799999999999999999999999999999999999999999999987665 3689999999999999999998 6777
Q ss_pred HHhHHHHHHHHh
Q psy6026 83 QLLQDATRKEAV 94 (98)
Q Consensus 83 ~~~~~~~r~~~~ 94 (98)
.+.+++++++++
T Consensus 79 ~l~~~~pK~k~~ 90 (119)
T 1b34_A 79 LLVDVEPKVKSK 90 (119)
T ss_dssp HTC---------
T ss_pred hHhhhccccccc
Confidence 888888886554
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.95 E-value=8.4e-28 Score=156.68 Aligned_cols=89 Identities=27% Similarity=0.573 Sum_probs=56.3
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCcccccH
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGDEVDTQ 83 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~~~d~~ 83 (98)
..|++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+|+. ...++.+||||++|+||++||...|++
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~-~~~lg~v~IRG~nI~~I~~pd~l~d~p 93 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDK-FFRLPECYIRGNNIKYLRIQDEVLSQV 93 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCE-EEEEEEEEECGGGEEEEEC--------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCce-eeEcCeEEEeCCeEEEEecCHHHhhhh
Confidence 5799999999999999999999999999999999999999999999877642 468999999999999999999999999
Q ss_pred HhHHHHHHHH
Q psy6026 84 LLQDATRKEA 93 (98)
Q Consensus 84 ~~~~~~r~~~ 93 (98)
+++.....+.
T Consensus 94 ~~~~~~~~~~ 103 (105)
T 4emh_A 94 AKQQAQQREN 103 (105)
T ss_dssp ----------
T ss_pred hhhhhccccC
Confidence 9987665543
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.92 E-value=3.3e-25 Score=136.64 Aligned_cols=73 Identities=30% Similarity=0.458 Sum_probs=66.8
Q ss_pred cchHHHHhhcCCCeEEEEEcCC-cEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 4 LLFYSFFKSLVGKDVVVELKND-VSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng-~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
|.|+++|.+++|++|+|+|+|| ++|.|+|.+||+|||++|+||+++..++. ...++.++|||++|+||+.||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEK--VRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCc--EeECCeEEEeCCeEEEEEeCCC
Confidence 7999999999999999999999 99999999999999999999999876543 4689999999999999999974
No 6
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.92 E-value=9.8e-25 Score=135.73 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=68.3
Q ss_pred Cccc--chHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 1 MERL--LFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 1 ~~~~--~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
|+.| .|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..++. ...++.++|||++|++|+.++.
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS--GKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSC--EEEEEEEEECGGGEEEEEEC--
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCc--eeECCEEEECCCEEEEEEecCC
Confidence 5566 59999999999999999999999999999999999999999999987654 4689999999999999999874
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.92 E-value=7.6e-25 Score=134.81 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=67.5
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
+.|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..++. ...++.+||||++|+||+.||.
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEV--VRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEECC-
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCc--EeECCEEEECCCEEEEEEeCCC
Confidence 689999999999999999999999999999999999999999999876643 4689999999999999999975
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.92 E-value=8.7e-25 Score=134.03 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=66.4
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
+.|+++|++++|++|+|+|+||+.|.|+|.+||+|||++|+||+++..++. ...++.++|||++|+||+.+++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEV--VKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCc--eeECCEEEECCCEEEEEEeCCC
Confidence 579999999999999999999999999999999999999999999876543 4689999999999999999873
No 9
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.91 E-value=1.4e-24 Score=136.77 Aligned_cols=76 Identities=29% Similarity=0.330 Sum_probs=67.2
Q ss_pred cccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCcc
Q psy6026 2 ERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGDE 79 (98)
Q Consensus 2 ~~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~~ 79 (98)
+...|++||++++|++|+|+|+||+.|+|+|.+||+|||++|+||+++..++. ...++.+||||++|+||+.||..
T Consensus 3 ~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~--~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL--SGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEESSEEECGGGEEEEEECC--
T ss_pred cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCce--eeEccEEEEeCCeEEEEEeCCcc
Confidence 35689999999999999999999999999999999999999999998754322 46899999999999999999863
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=1.3e-24 Score=133.45 Aligned_cols=72 Identities=28% Similarity=0.396 Sum_probs=65.3
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
+.|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..++. ...++.++|||++|+||+..|
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKK--TNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEE--EEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCc--ccEecEEEEcCCeEEEEEecC
Confidence 689999999999999999999999999999999999999999998765432 468999999999999999765
No 11
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.91 E-value=2e-24 Score=137.93 Aligned_cols=74 Identities=28% Similarity=0.324 Sum_probs=61.2
Q ss_pred cccchHHHHhhcCCCeEEEEEcCC-cEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 2 ERLLFYSFFKSLVGKDVVVELKND-VSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 2 ~~~~p~~~L~~l~gk~V~V~Lkng-~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
+.+.|+++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..++. ...+|.+||||++|+||..++
T Consensus 18 ~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~--~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 18 QPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVS--HGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp --------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEE--EEECCSEEECGGGEEEEEECC
T ss_pred ccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCe--EeEcCEEEEcCCeEEEEEeCC
Confidence 467899999999999999999999 99999999999999999999999865443 468999999999999999886
No 12
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.90 E-value=1.1e-23 Score=141.61 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=75.4
Q ss_pred HHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCcccccHHhH
Q psy6026 7 YSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGDEVDTQLLQ 86 (98)
Q Consensus 7 ~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~~~d~~~~~ 86 (98)
+++|++++|++|+|+|+||+.|.|+|.+||+|||++|+||+++. + ..+|.++|||++|++|+.|+..+|+++++
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~----~~lg~v~IRG~nI~~I~~~d~~~d~~~f~ 75 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G----EKFNRVFIMYRYIVHIDSTERRIDMREFA 75 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C----CEEEEEEECGGGEEEEEECCCCCCHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C----CEeceEEEeCCeEEEEEcCCcccCHHHHH
Confidence 57999999999999999999999999999999999999999884 2 36899999999999999999999999999
Q ss_pred HHHHHH
Q psy6026 87 DATRKE 92 (98)
Q Consensus 87 ~~~r~~ 92 (98)
++.+++
T Consensus 76 ~~~~r~ 81 (130)
T 1m5q_A 76 KQAEKI 81 (130)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 999887
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=1.9e-23 Score=129.99 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=65.7
Q ss_pred ccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 3 RLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 3 ~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
...|+++|.+++|++|+|+|+||++|.|+|.+||+|||++|+||+++ .++. ...++.+||||++|+||+.+|
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~--~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGN--VYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTE--EEEEEEEEECGGGEEEEEECC
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCc--ccCCCEEEECCCEEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999 3332 468999999999999999886
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=1.9e-23 Score=130.53 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=66.1
Q ss_pred cccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEec
Q psy6026 2 ERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQL 75 (98)
Q Consensus 2 ~~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~ 75 (98)
+.+.|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..++. ...++.+||||++|+||+.
T Consensus 12 ~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 12 NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEV--TRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEC
T ss_pred cCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCc--ccCCCEEEECCCEEEEEEC
Confidence 46789999999999999999999999999999999999999999999876543 4689999999999999973
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.89 E-value=6.3e-23 Score=131.27 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=65.2
Q ss_pred ccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEEC-CCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 3 RLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTD-PDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 3 ~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~-~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
...|+.+|.+++|++|+|+|+||+.|.|+|.+||+|||++|+||+++. .++. ...++.++|||++|+||....+
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~--~~~lg~v~IRG~nI~~i~p~~~ 92 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGV--TEKHSEMLLNGNGMCMLIPGGK 92 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCC--EEEEEEEEECSTTEEEEEECC-
T ss_pred cccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCc--EeEcCEEEEcCCEEEEEEeCCC
Confidence 468999999999999999999999999999999999999999999987 3333 5689999999999999996643
No 16
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=8.7e-23 Score=125.67 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=53.2
Q ss_pred chHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 5 LFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 5 ~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
.+.++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..++. ...+|.++|||++|+||+..|.
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ--QNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------CBSSEEECSSSEEEEEC---
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCc--EeEcCEEEECCCeEEEEEeccC
Confidence 47899999999999999999999999999999999999999999876654 4689999999999999998763
No 17
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-22 Score=129.64 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=65.2
Q ss_pred chHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCC-----CcceeecceEEEEcCeEEEEecCCcc
Q psy6026 5 LFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDK-----YPHMLSVKNCFIRGSVVRYVQLPGDE 79 (98)
Q Consensus 5 ~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~-----~~~~~~~~~v~IRG~~I~~I~~p~~~ 79 (98)
-|+.+|++++|++|.|+|+||+.|.|+|.+||+|||++|+||.++.... ......+|.+||||++|.+|..++..
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 5899999999999999999999999999999999999999999864221 12246799999999999999999876
Q ss_pred cccH
Q psy6026 80 VDTQ 83 (98)
Q Consensus 80 ~d~~ 83 (98)
.|..
T Consensus 90 ~d~~ 93 (96)
T 3bw1_A 90 DDGA 93 (96)
T ss_dssp ---C
T ss_pred cccc
Confidence 6543
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.87 E-value=6.4e-22 Score=126.18 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=63.9
Q ss_pred cccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECC----CCC-------cceeecceEEEEcCeE
Q psy6026 2 ERLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDP----DKY-------PHMLSVKNCFIRGSVV 70 (98)
Q Consensus 2 ~~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~----~~~-------~~~~~~~~v~IRG~~I 70 (98)
+...|+++|+.++|++|+|+|+||+.|.|+|.+||+|||++|+||+++.. ++. .....+|.+||||++|
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGE
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeE
Confidence 35689999999999999999999999999999999999999999998753 121 1256899999999999
Q ss_pred EEEecC
Q psy6026 71 RYVQLP 76 (98)
Q Consensus 71 ~~I~~p 76 (98)
.+|+.|
T Consensus 86 v~I~p~ 91 (93)
T 4emg_A 86 ILIAPP 91 (93)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999976
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.85 E-value=1.3e-21 Score=124.69 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=65.4
Q ss_pred cchHHHHhhcCCCeEEEEE----cCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 4 LLFYSFFKSLVGKDVVVEL----KNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~L----kng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
..|+++|.++++++|+|++ +||++|.|+|.+||+|||++|+||+++..++. ....+|.++|||++|.+|+.++
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~-~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK-SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSC-CEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC-ceeEcCeEEEeCCEEEEEEeCC
Confidence 5799999999999999999 99999999999999999999999999875433 2468999999999999999765
No 20
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.85 E-value=9.4e-22 Score=130.62 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=65.8
Q ss_pred ccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCC---------CCc----ceeecceEEEEcCe
Q psy6026 3 RLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPD---------KYP----HMLSVKNCFIRGSV 69 (98)
Q Consensus 3 ~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~---------~~~----~~~~~~~v~IRG~~ 69 (98)
.+.|+.+|.+++|++|+|+|+||+.|.|+|.+||+|||++|+||+++..+ |.. ....+|.+||||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 47899999999999999999999999999999999999999999986532 211 03579999999999
Q ss_pred EEEEecCCc
Q psy6026 70 VRYVQLPGD 78 (98)
Q Consensus 70 I~~I~~p~~ 78 (98)
|++|...+.
T Consensus 106 Vv~I~~~~~ 114 (121)
T 2fwk_A 106 VAMLVPGGD 114 (121)
T ss_dssp EEEEESSSC
T ss_pred EEEEEecCC
Confidence 999998765
No 21
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.85 E-value=1.1e-21 Score=124.13 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=62.3
Q ss_pred cchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECC---C-----CCcceeecceEEEEcCeEEEEec
Q psy6026 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDP---D-----KYPHMLSVKNCFIRGSVVRYVQL 75 (98)
Q Consensus 4 ~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~---~-----~~~~~~~~~~v~IRG~~I~~I~~ 75 (98)
+.|.++|.+++|++|+|+|+||+.|.|+|.+||+|||++|+||.++.. . .......+|.++|||++|.+|++
T Consensus 3 ~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~ 82 (91)
T 1d3b_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (91)
T ss_dssp ----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEE
T ss_pred CChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEc
Confidence 568899999999999999999999999999999999999999998531 1 11124689999999999999998
Q ss_pred CCc
Q psy6026 76 PGD 78 (98)
Q Consensus 76 p~~ 78 (98)
++.
T Consensus 83 ~~~ 85 (91)
T 1d3b_B 83 EGP 85 (91)
T ss_dssp EEC
T ss_pred CCC
Confidence 875
No 22
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.84 E-value=8.9e-21 Score=124.78 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=56.0
Q ss_pred hHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCC-----CcceeecceEEEEcCeEEEEecCCc--
Q psy6026 6 FYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDK-----YPHMLSVKNCFIRGSVVRYVQLPGD-- 78 (98)
Q Consensus 6 p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~-----~~~~~~~~~v~IRG~~I~~I~~p~~-- 78 (98)
|...|.+++|++|+|+|+||+.|.|+|.+||.||||+|+||.++..+. ......+|.++|||++|.+|+.+|.
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~e 103 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSE 103 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC---
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccc
Confidence 567899999999999999999999999999999999999999976431 1125689999999999999998875
Q ss_pred ccccHHhH
Q psy6026 79 EVDTQLLQ 86 (98)
Q Consensus 79 ~~d~~~~~ 86 (98)
+++.|+.+
T Consensus 104 e~~~p~~~ 111 (113)
T 4emk_C 104 EIPNPFVQ 111 (113)
T ss_dssp --------
T ss_pred cccCcccc
Confidence 55555443
No 23
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.83 E-value=1.9e-20 Score=123.78 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=63.2
Q ss_pred ccchHHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCC------CC------cceeecceEEEEcC
Q psy6026 3 RLLFYSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPD------KY------PHMLSVKNCFIRGS 68 (98)
Q Consensus 3 ~~~p~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~------~~------~~~~~~~~v~IRG~ 68 (98)
.+.|+++|..++ |++|.|+|+||+.|.|+|.+||+|||++|+||+++... +. .....+|.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 357999999999 59999999999999999999999999999999986421 10 01246999999999
Q ss_pred eEEEEecCCc
Q psy6026 69 VVRYVQLPGD 78 (98)
Q Consensus 69 ~I~~I~~p~~ 78 (98)
+|.+|+.++.
T Consensus 105 nVv~I~~~~~ 114 (118)
T 1b34_B 105 SVIVVLRNPL 114 (118)
T ss_dssp GEEEEEECCC
T ss_pred EEEEEEeCch
Confidence 9999998875
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.77 E-value=1.1e-18 Score=126.42 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=65.3
Q ss_pred ccchHHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECC----CC----CcceeecceEEEEcCeEEEEe
Q psy6026 3 RLLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDP----DK----YPHMLSVKNCFIRGSVVRYVQ 74 (98)
Q Consensus 3 ~~~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~----~~----~~~~~~~~~v~IRG~~I~~I~ 74 (98)
.+.+...|++++|++|+|+|+||++|.|+|.+||+||||+|+||+++.. ++ ......++.+||||++|.+|.
T Consensus 2 ~v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Is 81 (231)
T 3pgw_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (231)
T ss_pred CcCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEE
Confidence 3567789999999999999999999999999999999999999998641 10 113578999999999999999
Q ss_pred cCCc
Q psy6026 75 LPGD 78 (98)
Q Consensus 75 ~p~~ 78 (98)
+.+-
T Consensus 82 ve~p 85 (231)
T 3pgw_B 82 VEGP 85 (231)
T ss_pred ecCC
Confidence 8754
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.06 E-value=1.2e-09 Score=68.49 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=56.7
Q ss_pred chHHHHhhcCCCeEEEEEcCCcEEEEEEEEec-cccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCCc
Q psy6026 5 LFYSFFKSLVGKDVVVELKNDVSICGTLHSVD-QYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 5 ~p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D-~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
.|. .|++++||+|.|.|.||++|+|+|.++| ...|++|.|+ ..++ .+..++|.|+.|..|.+-++
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~~~~-----~~~~~iI~G~aI~eI~v~~~ 73 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---LEDG-----SMSVTGIMGHAVQTVETMNE 73 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---CTTS-----CEEEEEECGGGEEEEEEEEC
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---ccCC-----eEEEEEEecceEEEEEEecc
Confidence 454 7899999999999999999999999999 8999999999 3332 46899999999999987754
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.70 E-value=0.00054 Score=42.77 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=55.6
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEec-cccceEEeeEEEECCCCCc-------ceeecceEEEEcCeEEEEecCCc
Q psy6026 12 SLVGKDVVVELKNDVSICGTLHSVD-QYLNIKLTDISVTDPDKYP-------HMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 12 ~l~gk~V~V~Lkng~~~~G~L~~~D-~~mNi~L~~~~~~~~~~~~-------~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
.++|+++.+..+.+..|+|+|..+| +.--+.|+|+..+..+|.+ ...-++.+..||+.|.-+.+-+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 4689999999999999999999999 5778999999998665432 12247899999999999987653
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.41 E-value=0.00049 Score=43.53 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHhhcCCCeEEEEEcCCcEEEEEEEEec-cccceEEeeEEEECCCCCc-------ceeecceEEEEcCeEEEEecCC
Q psy6026 7 YSFFKSLVGKDVVVELKNDVSICGTLHSVD-QYLNIKLTDISVTDPDKYP-------HMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 7 ~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D-~~mNi~L~~~~~~~~~~~~-------~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
..--..++|+++.+..|.+..|+|+|..+| +.--+.|+|+..+.++|.+ ...-++.+..||+-|.-+.+-+
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 334467899999999999999999999999 5778999999987665432 1234789999999999988754
No 28
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.18 E-value=0.00049 Score=42.11 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 8 SFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 8 ~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
.||+.+. +.+|+|.|.||..++|++.+||.|+=+.-. +|. ..+|-=..|..|....
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~-------~g~-------qqlIYKhAISTI~p~~ 71 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLES-------EGK-------QQLIYKHAISTFAPQK 71 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES-------SSC-------EEEEEGGGEEEEEESS
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEE-------CCe-------eEEEEcceEEEEeecc
Confidence 4667666 889999999999999999999999855432 232 3466667777776543
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.16 E-value=0.0046 Score=38.30 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=53.8
Q ss_pred hHHHHhhcCCCeEEEEEcCCcEEEEEEEEec-cccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecC
Q psy6026 6 FYSFFKSLVGKDVVVELKNDVSICGTLHSVD-QYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLP 76 (98)
Q Consensus 6 p~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D-~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p 76 (98)
.+.+|.++.|++|.+.|..+..+.|+..++| ...|+..++-. .+=| ..++..+|++-|..+++.
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~--TPiG-----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ--TPIG-----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC--CTTC-----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC--CCcc-----cchhhhhhcCCEEEEEec
Confidence 4788999999999999999999999999999 46688888743 2223 468999999999999875
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.12 E-value=0.00061 Score=41.23 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 7 YSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 7 ~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
-.||+.+. ..+|+|.|.||..++|++.+||.|+=+.- + + ...+|.=..|.+|....
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~-~------~--------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK-N------T--------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-S------S--------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE-C------C--------ceEEEEeeeEEEEeEcc
Confidence 35677776 78999999999999999999999985443 2 1 24567777788877553
No 31
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.11 E-value=0.00062 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 7 YSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 7 ~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
-.||+.+. +.+|+|.|.||..++|++.+||.|+=+.- + + ...+|-=..|..|....
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~-~------~--------~qqLVYKHAISTI~p~~ 66 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK-N------T--------VSQMVYKHAISTVVPSR 66 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE-S------S--------SCEEEEGGGEEEEEESS
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe-c------C--------ceEEEEeeeeEEEeecc
Confidence 35666666 77899999999999999999999985543 2 1 13455566677766443
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.01 E-value=0.0014 Score=39.91 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 7 YSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 7 ~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
-.||+.+. ..+|+|.|.||..++|++.+||.|+=+.-.+ | ...+|-=..|.+|....
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~-------g-------~~qLIYKhAISTI~p~~ 67 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ-------G-------KQHLIYKHAISTYTVET 67 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET-------T-------EEEEEEGGGEEEEEC--
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC-------C-------eeEEEEeeeEEEEeECc
Confidence 35677777 8899999999999999999999998555332 2 23467777788877543
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.83 E-value=0.0015 Score=39.99 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 8 SFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 8 ~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
.||+.+. ..+|+|.|.||..+.|++.+||.|+=+. + +|. ..+|-=..|.+|....
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g~-------~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NTV-------TQMVYKHAISTVVPAR 67 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SSS-------EEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CCc-------eEEEEeeeEEEEeecC
Confidence 4666665 4569999999999999999999998654 2 222 3467777888887554
No 34
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.76 E-value=0.0012 Score=42.37 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHhhcCCC--eEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 7 YSFFKSLVGK--DVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 7 ~~~L~~l~gk--~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
-.||+.+..+ +|+|.|.||..++|++.+||.|+=+.-.+ ...+|-=..|.+|....
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~---------------kqqLIYKHAISTI~p~~ 68 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT---------------VSQMVYKHAISTVVPSR 68 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS---------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC---------------ceEEEEeeeeEEEeecc
Confidence 3567777644 89999999999999999999998554311 23456666777776543
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0043 Score=37.23 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEE
Q psy6026 9 FFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKL 43 (98)
Q Consensus 9 ~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L 43 (98)
||+.+. +.+|+|.|.||..++|.+.+||.|+=+.-
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVK 53 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 444433 67899999999999999999999986553
No 36
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.56 E-value=0.0039 Score=41.07 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=40.4
Q ss_pred HhhcCCCeEEEEEcCCcEEEEEEEEeccccceEE--eeEEEECCCCCcceeecceEEEEcCeEEEEecCC
Q psy6026 10 FKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKL--TDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPG 77 (98)
Q Consensus 10 L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L--~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p~ 77 (98)
+..++|..|.|+|+||..++|++..+|. -+|+| ++|. . ...-|+++.|.=+.+-+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~------~------s~~~I~asdI~DLkVl~ 63 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAN------D------STKSIVTKDIKDLRILP 63 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETT------T------EEEEEEGGGEEEEEECC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccc------c------ccceeecccccceeeee
Confidence 3567899999999999999999999983 35555 8872 1 11177777777665443
No 37
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.06 E-value=0.025 Score=34.82 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=48.5
Q ss_pred hhcCCCeEEEEEcCCc-EEEEEEEEeccc-cceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecC
Q psy6026 11 KSLVGKDVVVELKNDV-SICGTLHSVDQY-LNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLP 76 (98)
Q Consensus 11 ~~l~gk~V~V~Lkng~-~~~G~L~~~D~~-mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p 76 (98)
..++|+.|.++.+++. .|+|.|..+|.. -+|.|.++. .+|- ......+.+++.-|.-+.+-
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~--~~~s~eVtls~~DI~~L~ii 67 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV--KCLVPEVTFRAGDITELKIL 67 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE--ECSSSEEEEEGGGCSEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC--CCCCcEEEEEecChhheEEE
Confidence 3678999999999999 999999999964 589999995 3443 22456799999888766543
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.88 E-value=0.2 Score=29.75 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEe
Q psy6026 7 YSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQ 74 (98)
Q Consensus 7 ~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~ 74 (98)
.+.|++++ ..+|.|+|.+|..+.|.+.-+|.++=+.-.+ ++ ...+|.-..|.||.
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~-------~~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SE-------RSTIVRLAAIAYIT 67 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECT------TC-------CEEEEEGGGEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CC-------CeEEEEeeeeEEEe
Confidence 45666666 6789999999999999999999987544322 22 24466666666664
No 39
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.65 E-value=0.22 Score=29.20 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=44.5
Q ss_pred HHHHhhcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEec
Q psy6026 7 YSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQL 75 (98)
Q Consensus 7 ~~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~ 75 (98)
-..|..-.|++|-+-.-....++|+|..||+-. +.|.|++....+ +-..++++=+-|.+|.+
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GN------k~k~liv~idDinWimL 69 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGN------RGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEE------EEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcc------ccceeEEEeccceEEEe
Confidence 457888899999999999999999999999754 678998876543 23466677666666654
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.14 E-value=0.39 Score=28.66 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEe
Q psy6026 7 YSFFKSLV--GKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQ 74 (98)
Q Consensus 7 ~~~L~~l~--gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~ 74 (98)
.+.|++++ ..+|.|+|.+|..+.|++.-.|.++=+.-.+ ++ ...+|.-..|.||.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~------~~-------~~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE------NS-------RQTTIWKQAIAYLQ 69 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC----------------CEEEEEGGGEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC------CC-------CeEEEEeeeeEEEE
Confidence 56677776 5679999999999999999999987544432 11 24566666677664
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=92.96 E-value=0.83 Score=28.80 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=47.4
Q ss_pred hcCCCeEEEEEcCCc-EEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEecC
Q psy6026 12 SLVGKDVVVELKNDV-SICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLP 76 (98)
Q Consensus 12 ~l~gk~V~V~Lkng~-~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~p 76 (98)
..+|+.|.|...+.. .|+|.+..+|. -++.|.+|.. +|-+-.....++-++..-|.-+.+-
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGiplk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEECSCSSSCEEEETTTEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCcCCCCceEEEEecchhheeee
Confidence 678999999999997 99999999995 4488888873 3432123567889999888877643
No 42
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=87.86 E-value=0.45 Score=33.56 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=34.5
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEc
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG 67 (98)
..|++|.+...++ +.|+..++|+.-.+.++. .+|. +....|++.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~-----~~G~-~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILT-----EEGI-KEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEE-----TTEE-EEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEE-----CCCe-EEEEEeEEEEec
Confidence 4699999987665 999999999999999875 2232 233457777765
No 43
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=87.60 E-value=0.52 Score=31.84 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHhhcCCCeEEEEE----cCCcEEEEEEEEeccc
Q psy6026 9 FFKSLVGKDVVVEL----KNDVSICGTLHSVDQY 38 (98)
Q Consensus 9 ~L~~l~gk~V~V~L----kng~~~~G~L~~~D~~ 38 (98)
-+..++|+.|.|+| .+.+.++|+|.++|+.
T Consensus 98 df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 98 AVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 35678999999999 4559999999999964
No 44
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=86.08 E-value=1.3 Score=31.85 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..|++|+|.+.+|..+.|+..++|+.-.+.++.
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 459999999988999999999999999999875
No 45
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=85.20 E-value=0.66 Score=32.80 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
.|++|.+...++ +.|+..++|+.-.+.++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998877 999999999999999875
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.74 E-value=2.5 Score=30.89 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=35.7
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEeccccceEEeeEEEECCCCCcceeecceEEEEc
Q psy6026 12 SLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67 (98)
Q Consensus 12 ~l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG 67 (98)
...|++|.|...+ ..+.|+..++|+.-.+.++. .+| .+....|++.+|+
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~-----~~g-~~~~~~Gev~~r~ 318 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDKQGALLLEQ-----DGI-IKPWMGGEISLRS 318 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECTTSCEEEEE-----TTE-EEEESSCEEEEC-
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECCCCeEEEEE-----CCC-EEEEEeeeEEEec
Confidence 3469999998765 47999999999999999875 233 2234557777764
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=84.66 E-value=2.9 Score=29.35 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=28.4
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..|++|.+...++..+.|+..++|+.-.+. +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 469999999988877999999999998888 54
No 48
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=81.39 E-value=7.7 Score=24.31 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=43.9
Q ss_pred EEEEcCCcEEEEEEEEeccccceEEeeEEEECC----CCCc---------ceeecceEEEEcCeEEEEecCCc
Q psy6026 19 VVELKNDVSICGTLHSVDQYLNIKLTDISVTDP----DKYP---------HMLSVKNCFIRGSVVRYVQLPGD 78 (98)
Q Consensus 19 ~V~Lkng~~~~G~L~~~D~~mNi~L~~~~~~~~----~~~~---------~~~~~~~v~IRG~~I~~I~~p~~ 78 (98)
.++|++|..+-|.+..-|+. +.++|+....+ .|+. ..+.-+.++||.+.|.++.-+..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 57999999999999977764 88899886432 1111 14457899999999999998754
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.47 E-value=3.7 Score=23.40 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
.|..|.+.-.||+.|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4889999999999999999999854
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=76.10 E-value=2.9 Score=26.02 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=18.7
Q ss_pred HhhcCCC-eEEEEEcCCcEEEEEEE
Q psy6026 10 FKSLVGK-DVVVELKNDVSICGTLH 33 (98)
Q Consensus 10 L~~l~gk-~V~V~Lkng~~~~G~L~ 33 (98)
+..+-|. +|.++|.||+.+.|++.
T Consensus 22 ~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 22 VKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHhhCCeeEEEEEEcCCCeEeeeec
Confidence 3344444 79999999999999874
No 51
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.22 E-value=7.6 Score=28.52 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=26.9
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..|++|+|... +..+.|+..++|+.-.+.+++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 46999999865 567999999999999999875
No 52
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=68.07 E-value=9.1 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCCeEEEEEcCCcEEEEEEEE
Q psy6026 14 VGKDVVVELKNDVSICGTLHS 34 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~ 34 (98)
+|..|.++-.||..|-|++..
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd 38 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIID 38 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEE
T ss_pred cCCeEEEEecCCCEEEEEEEe
Confidence 589999999999999999943
No 53
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=65.10 E-value=3.3 Score=24.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
.|.-|.+.-+||+.|-|++..+|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccC
Confidence 5899999999999999999999864
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=63.74 E-value=12 Score=21.75 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
+|..|+..-.||..|.|++.+++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 4889999999999999999999864
No 55
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=62.18 E-value=3.6 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=19.6
Q ss_pred HhhcCCCeEEEEEcCCcEEEEEEE
Q psy6026 10 FKSLVGKDVVVELKNDVSICGTLH 33 (98)
Q Consensus 10 L~~l~gk~V~V~Lkng~~~~G~L~ 33 (98)
+..+.+.++.|+|+||..+.|+..
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHcCCeEEEEEeCCCEEEEEEE
Confidence 445678999999999999998643
No 56
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.80 E-value=17 Score=21.25 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
.|..|...=.||..|-|++..+|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 4889999999999999999999954
No 57
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=58.13 E-value=13 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=26.9
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecc--ccceEEeeEE
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQ--YLNIKLTDIS 47 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~--~mNi~L~~~~ 47 (98)
.+|.+|..+-+||+.|.|++.+... |..+...|-.
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGS 43 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSC
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCC
Confidence 3699999999999999999998763 4455554433
No 58
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=56.41 E-value=17 Score=25.63 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=28.3
Q ss_pred HHHhhcCCCeEEEEEcCCcEEEEEEEEeccccc
Q psy6026 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLN 40 (98)
Q Consensus 8 ~~L~~l~gk~V~V~Lkng~~~~G~L~~~D~~mN 40 (98)
.+=+.|+|+.+.-++.+|..+.|+|....+|+=
T Consensus 18 ~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G 50 (219)
T 3uby_A 18 PLARAFLGQVLVRRLPNGTELRGRIVETEAYLG 50 (219)
T ss_dssp HHHHHTTTCEEEEECTTSCEEEEEEEEEEEECS
T ss_pred HHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccC
Confidence 344579999999999999999999999999873
No 59
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=51.46 E-value=11 Score=29.23 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.6
Q ss_pred chHHHHhhcC---CCeEEEEEcCC---cEEEEEEEE
Q psy6026 5 LFYSFFKSLV---GKDVVVELKND---VSICGTLHS 34 (98)
Q Consensus 5 ~p~~~L~~l~---gk~V~V~Lkng---~~~~G~L~~ 34 (98)
....+|.+.- |.+|+|+.++| .+|+|+|+-
T Consensus 2 ~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~ 37 (438)
T 1zq1_A 2 RVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMP 37 (438)
T ss_dssp CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECC
T ss_pred chHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEec
Confidence 3456777665 99999999998 899999993
No 60
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=50.62 E-value=25 Score=24.29 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..|++|+| +| +.|+..++|..-.+.++.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 46999999 45 999999999999999864
No 61
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.86 E-value=17 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
.|..|...=.||..|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 4889999999999999999999964
No 62
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=41.04 E-value=42 Score=20.52 Aligned_cols=30 Identities=27% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHhhcCCCeEEEEEcCCc----EEEEEEEEecc
Q psy6026 8 SFFKSLVGKDVVVELKNDV----SICGTLHSVDQ 37 (98)
Q Consensus 8 ~~L~~l~gk~V~V~Lkng~----~~~G~L~~~D~ 37 (98)
.-|.+.+|++|.+..+.|+ +-.|+|...=.
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~etYP 51 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYP 51 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECS
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEecC
Confidence 5678899999999999995 67899987643
No 63
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=37.73 E-value=20 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=17.9
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEE
Q psy6026 12 SLVGKDVVVELKNDVSICGTLHS 34 (98)
Q Consensus 12 ~l~gk~V~V~Lkng~~~~G~L~~ 34 (98)
+..|..|.|++.+|+.+.|++.+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 45688888888888888888754
No 64
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=35.28 E-value=31 Score=25.48 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=20.2
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEE
Q psy6026 11 KSLVGKDVVVELKNDVSICGTLHS 34 (98)
Q Consensus 11 ~~l~gk~V~V~Lkng~~~~G~L~~ 34 (98)
+.+.|++|+|..++|..|.|++-.
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 457799999999999999998854
No 65
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=33.35 E-value=63 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=26.8
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEeeE
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTDI 46 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~ 46 (98)
..+.|.+.+|+.|.+.+.+.|...++.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888766443
No 66
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=33.32 E-value=62 Score=24.53 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.8
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEeeE
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTDI 46 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~ 46 (98)
..+.|.+.+|+.|.+.+.+.|...++.+=.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999999998876443
No 67
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=32.82 E-value=83 Score=22.51 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=26.8
Q ss_pred EEeccccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEec
Q psy6026 33 HSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQL 75 (98)
Q Consensus 33 ~~~D~~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~ 75 (98)
+++|..|.+.+.++.+.+.++.. ...-+.+.|+|..|..|.-
T Consensus 1 ~~~~~~~~~li~n~~v~~~~~~~-~~~~~~v~I~~g~I~~vg~ 42 (418)
T 2qs8_A 1 MSLDVDSKTLIHAGKLIDGKSDQ-VQSRISIVIDGNIISDIKK 42 (418)
T ss_dssp ------CCEEEEEEEECCSSCSS-CEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCccEEEEeeEEEeCCCCc-cccCcEEEEECCEEEEEeC
Confidence 35778889999999988765421 1233689999999999863
No 68
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=28.39 E-value=77 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.8
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..+.|.+.+|+.+.+.+.+.|...++.|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEE
Confidence 368899999999999999999988876643
No 69
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=28.36 E-value=44 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.9
Q ss_pred HHHHhhcC---CCeEEEEEcCCcEEEEEEEE
Q psy6026 7 YSFFKSLV---GKDVVVELKNDVSICGTLHS 34 (98)
Q Consensus 7 ~~~L~~l~---gk~V~V~Lkng~~~~G~L~~ 34 (98)
..+|.+.- |.+|+|+.++ .+|+|+|+-
T Consensus 8 ~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~ 37 (435)
T 2d6f_A 8 RKFLESASIDVGDMVLVEKPD-VTYEGMVLD 37 (435)
T ss_dssp HHHHHTTTCCTTCEEEEECSS-CEEEEEECC
T ss_pred HHHHHHcCCCCCCEEEEEECC-eEEEEEEec
Confidence 45677665 9999999877 999999993
No 70
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=28.02 E-value=42 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=18.2
Q ss_pred hcCCCeEEEE-EcCCcEEEEEEEE
Q psy6026 12 SLVGKDVVVE-LKNDVSICGTLHS 34 (98)
Q Consensus 12 ~l~gk~V~V~-Lkng~~~~G~L~~ 34 (98)
+..|..|+|+ +.+|+.+.|++.+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4579999999 9999999999864
No 71
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=26.45 E-value=83 Score=21.78 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.3
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
.++.|.+.+|+.+.+.+.+.|...++.|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 468999999999999999999988876644
No 72
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=25.83 E-value=90 Score=19.98 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.4
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEec
Q psy6026 13 LVGKDVVVELKNDVSICGTLHSVD 36 (98)
Q Consensus 13 l~gk~V~V~Lkng~~~~G~L~~~D 36 (98)
..|..|.|.-.||..|.|+..+.-
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeee
Confidence 458999999999999999998874
No 73
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=25.47 E-value=1.4e+02 Score=19.75 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=25.6
Q ss_pred ceEEeeEEEECCCCCcceeecceEEEEcCeEEEEec
Q psy6026 40 NIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQL 75 (98)
Q Consensus 40 Ni~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~~ 75 (98)
.++|+|+.+.++++.. ...-..+.|++..|..|.-
T Consensus 5 ~lli~ng~i~d~~~~~-~~~~~dV~I~~G~I~~Ig~ 39 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPD-LLQGFEILIEDGFIREVSD 39 (426)
T ss_dssp EEEEEEEEECCTTSSS-CEEEEEEEEETTEEEEEES
T ss_pred cEEEECeEEEeCCCCc-EecCcEEEEECCEEEEecC
Confidence 5789999988765421 2334679999999999963
No 74
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=25.20 E-value=95 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.9
Q ss_pred EcCCcEEEEEE---EEeccccceEEeeEEEECC
Q psy6026 22 LKNDVSICGTL---HSVDQYLNIKLTDISVTDP 51 (98)
Q Consensus 22 Lkng~~~~G~L---~~~D~~mNi~L~~~~~~~~ 51 (98)
+++...+.|.| .-||+...+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34556777877 5689999999999997643
No 75
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=24.51 E-value=1.2e+02 Score=20.47 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 15 GKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 15 gk~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
...+.|.+.+|..+.+.+..+|...+|-|=.
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~ 116 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIK 116 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEE
Confidence 3578999999999999999999988776643
No 76
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=24.26 E-value=76 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.6
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEeeE
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTDI 46 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~~ 46 (98)
..+.|.+.+|+.|.+.+.+.|...++.|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4689999999999999999999988876543
No 77
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*
Probab=24.03 E-value=1.7e+02 Score=21.02 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=24.0
Q ss_pred ccceEEeeEEEECCCCCcceeecceEEEEcCeEEEEe
Q psy6026 38 YLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQ 74 (98)
Q Consensus 38 ~mNi~L~~~~~~~~~~~~~~~~~~~v~IRG~~I~~I~ 74 (98)
.|++.+.++.+...++......-+.+.|+|..|..|.
T Consensus 5 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg 41 (447)
T 4f0r_A 5 RYEKIISARWIITVETDGEVLENHAIAIRDGKIAAII 41 (447)
T ss_dssp CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEE
T ss_pred cccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEe
Confidence 4567788888775432111234567888888888875
No 78
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=23.35 E-value=1.2e+02 Score=20.35 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=25.3
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEe
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLT 44 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~ 44 (98)
..+.|.+.+|..+.+.+..+|...++-|=
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 57899999999999999999988877664
No 79
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=22.98 E-value=76 Score=18.71 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCcEEEEEEEEecc
Q psy6026 15 GKDVVVELKNDVSICGTLHSVDQ 37 (98)
Q Consensus 15 gk~V~V~Lkng~~~~G~L~~~D~ 37 (98)
+..|.|++.++..+.|.+..|..
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 34789999999999999987754
No 80
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=22.55 E-value=1.1e+02 Score=23.14 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.3
Q ss_pred HhhcCCCeEEEEEcC----------C-cEEEEEEEEecc
Q psy6026 10 FKSLVGKDVVVELKN----------D-VSICGTLHSVDQ 37 (98)
Q Consensus 10 L~~l~gk~V~V~Lkn----------g-~~~~G~L~~~D~ 37 (98)
+..++|++++|.+.. . +.+.|++.++..
T Consensus 58 l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 58 PESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp GGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred HHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 467899999999952 2 789999988764
No 81
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.40 E-value=1.2e+02 Score=17.42 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy6026 14 VGKDVVVELKNDVSICGTLHSVDQY 38 (98)
Q Consensus 14 ~gk~V~V~Lkng~~~~G~L~~~D~~ 38 (98)
+|..+.-.-.||.-|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 4788888888999999999999863
No 82
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=22.01 E-value=1.3e+02 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.6
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..+.|.+.+|..+.+.+.++|...++-|=.
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEE
Confidence 578999999999999999999888776643
No 83
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=20.65 E-value=1.4e+02 Score=21.17 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=25.6
Q ss_pred CeEEEEEcCCcEEEEEEEEeccccceEEee
Q psy6026 16 KDVVVELKNDVSICGTLHSVDQYLNIKLTD 45 (98)
Q Consensus 16 k~V~V~Lkng~~~~G~L~~~D~~mNi~L~~ 45 (98)
..+.|.+.+|..+.+.+.++|...++.|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 468899999999999999999888877643
No 84
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=20.60 E-value=1.6e+02 Score=18.27 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred EcCCcEEEEEE---EEeccccceEEeeEEEECC
Q psy6026 22 LKNDVSICGTL---HSVDQYLNIKLTDISVTDP 51 (98)
Q Consensus 22 Lkng~~~~G~L---~~~D~~mNi~L~~~~~~~~ 51 (98)
.++...+.|.| ..||+...+.|+|+++...
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~~ 83 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREV 83 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEec
Confidence 34556677766 5789999999999998764
No 85
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A
Probab=20.21 E-value=60 Score=20.19 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCcEEEEEEEE-eccccceEEeeEE
Q psy6026 15 GKDVVVELKNDVSICGTLHS-VDQYLNIKLTDIS 47 (98)
Q Consensus 15 gk~V~V~Lkng~~~~G~L~~-~D~~mNi~L~~~~ 47 (98)
-|.+.|.+.++..+.|.+++ -|..+.+.|++..
T Consensus 70 ~k~i~V~I~dD~~~E~~~e~~~~E~F~v~L~~p~ 103 (123)
T 3fso_A 70 WKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPK 103 (123)
T ss_dssp EEEEEEEBCCC---------CCEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCchhccccCCCeEEEEEEeCCC
Confidence 36788888888888776665 3778888888864
Done!