RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6026
(98 letters)
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 87.9 bits (218), Expect = 1e-24
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 6 FYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFI 65
F + +L+G++V V L N G LH+VD LNI L + S +K+ + FI
Sbjct: 1 FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRV------FI 54
Query: 66 RGSVVRYVQLPGDEVDTQLLQD 87
+ ++ +D +
Sbjct: 55 MYRYIVHIDSTERRIDMREFAK 76
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 74.0 bits (182), Expect = 8e-20
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
F L + V +ELKN + GT+ VD +N L + +T ++ P L + IRG+
Sbjct: 5 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQL--ETLSIRGN 62
Query: 69 VVRYVQLPGDEVDTQLL 85
+RY LP D + L
Sbjct: 63 NIRYFILP-DSLPLDTL 78
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 72.1 bits (177), Expect = 5e-19
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
G V E G L + +N ++++ +T + + ++ +IRG
Sbjct: 6 VLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSN--ITVTYRDGRVAQLEQVYIRGC 63
Query: 69 VVRYVQLP 76
+R++ LP
Sbjct: 64 KIRFLILP 71
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Length = 72
Score = 62.4 bits (152), Expect = 2e-15
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+ V+V LK GTL D ++N+ L D + + + IRG
Sbjct: 6 DVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKV--GSVVIRG 63
Query: 68 SVVRYV 73
V +V
Sbjct: 64 DTVVFV 69
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 61.6 bits (150), Expect = 5e-15
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+ KDV+V LK G L D +LN+ L D + + IRG
Sbjct: 5 DVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRY--GKIVIRG 62
Query: 68 SVVRYV 73
V +
Sbjct: 63 DNVLAI 68
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 61.7 bits (150), Expect = 6e-15
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 9 FFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 68
+ V+V+LK + + G L S DQ++N+ L+D + + IRG
Sbjct: 11 VLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSD--SEEIQSDGSGKKLGTIVIRGD 68
Query: 69 VVRYV 73
V +
Sbjct: 69 NVILI 73
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 74
Score = 61.3 bits (149), Expect = 7e-15
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 67
+ + V+++LK D G L S D ++N+ L D + + L IRG
Sbjct: 9 DALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRL--GTVLIRG 66
Query: 68 SVVRYV 73
+ Y+
Sbjct: 67 DNIVYI 72
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 68
Score = 58.9 bits (143), Expect = 6e-14
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 11 KSLVGKDVVVELK-NDVSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSV 69
K LV V V+LK N GTL S D Y N++L + L FIR +
Sbjct: 2 KGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTL--GEIFIRCNN 59
Query: 70 VRYVQLPGD 78
V Y++ +
Sbjct: 60 VLYIRELPN 68
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 59.0 bits (143), Expect = 7e-14
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 8 SFFKSLVGKDVVVELKND-VSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIR 66
KS+VGK + VE+K + + G L VD Y+N+ LT+ + + S+ +R
Sbjct: 8 QMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTN--AMECKGEEKVRSLGEIVLR 65
Query: 67 GSVVRYVQ 74
G+ V +Q
Sbjct: 66 GNNVVLIQ 73
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 71
Score = 57.8 bits (140), Expect = 2e-13
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 8 SFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDIS-VTDPDKYPHMLSVKNCFIR 66
+ + +GK V+V+L++ I G L S DQ++N+ L D + D + Y +R
Sbjct: 5 ATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKR----GTMVVR 60
Query: 67 GSVVRYVQLP 76
G V ++
Sbjct: 61 GENVLFISPV 70
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein
LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Length = 92
Score = 46.8 bits (111), Expect = 6e-09
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 4 LLFYSFFKSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTDIS--VTDPDKYPHMLSVK 61
+L + +G + V +K D G L D+Y+N+ L D+ D+ K
Sbjct: 4 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNK 63
Query: 62 N-----------CFIRGSVVRYVQLPGD 78
+ G+ V + GD
Sbjct: 64 KLKRVMVNRLETILLSGNNVAMLVPGGD 91
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 81
Score = 36.3 bits (84), Expect = 5e-05
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 11 KSLVGKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45
+ + L++ GT + D+++N+ L D
Sbjct: 4 LQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD 38
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 93
Score = 27.9 bits (62), Expect = 0.079
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 15 GKDVVVELKNDVSICGTLHSVDQYLNIKLTD 45
V++ +N+ + G + + D++ N+ L +
Sbjct: 14 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 44
>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 24.4 bits (51), Expect = 2.7
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 47 SVTDPDKYPHMLSVKNCFIRGSVV--RYV 73
S D +P + N + G+++ +V
Sbjct: 18 SDADIKNFPWQVFFDNPWAGGALINEYWV 46
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 22.5 bits (48), Expect = 9.8
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 46 ISVTDPDKYPHMLSVKNCFIRGSVVRYVQL-PGD---EVDTQLLQDATRKEAVNATR 98
+ D+ + + GS R +L PGD VD + T + ++
Sbjct: 24 FRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.391
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,940
Number of extensions: 13661
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 15
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)