Query psy6027
Match_columns 531
No_of_seqs 189 out of 247
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:39:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1877|consensus 100.0 1E-104 3E-109 877.5 27.9 467 2-525 4-479 (819)
2 KOG1877|consensus 99.2 1.8E-11 4E-16 138.0 9.8 141 311-451 512-660 (819)
3 KOG2023|consensus 94.0 4.8 0.0001 46.4 19.4 391 108-529 227-698 (885)
4 PF01602 Adaptin_N: Adaptin N 91.1 17 0.00038 39.5 18.8 231 34-325 213-445 (526)
5 PF05804 KAP: Kinesin-associat 86.1 10 0.00022 44.3 13.3 331 58-416 253-675 (708)
6 PF01602 Adaptin_N: Adaptin N 85.5 60 0.0013 35.4 21.1 233 230-518 282-520 (526)
7 KOG2171|consensus 82.8 74 0.0016 38.9 18.5 198 73-282 137-376 (1075)
8 PF12755 Vac14_Fab1_bd: Vacuol 78.6 3.6 7.7E-05 36.0 4.6 74 161-263 2-78 (97)
9 PF12348 CLASP_N: CLASP N term 76.2 47 0.001 32.2 12.3 178 108-322 19-204 (228)
10 KOG0213|consensus 67.7 2.5E+02 0.0054 33.6 16.7 75 45-124 506-581 (1172)
11 PF12755 Vac14_Fab1_bd: Vacuol 66.3 25 0.00054 30.7 7.0 73 74-149 6-78 (97)
12 KOG1242|consensus 60.9 3.1E+02 0.0067 31.6 16.7 145 138-324 294-444 (569)
13 KOG2171|consensus 60.5 1.2E+02 0.0026 37.2 13.2 121 71-203 861-981 (1075)
14 PTZ00429 beta-adaptin; Provisi 59.8 3.6E+02 0.0079 32.1 22.6 261 31-324 197-471 (746)
15 PF12717 Cnd1: non-SMC mitotic 59.1 1.3E+02 0.0028 28.6 11.1 41 229-269 77-117 (178)
16 PF12348 CLASP_N: CLASP N term 58.7 88 0.0019 30.3 10.1 173 33-245 27-207 (228)
17 PF08623 TIP120: TATA-binding 58.0 33 0.00072 33.2 6.8 94 73-172 46-145 (169)
18 PF03224 V-ATPase_H_N: V-ATPas 55.7 67 0.0014 33.3 9.2 124 67-202 70-200 (312)
19 PF10350 DUF2428: Putative dea 52.3 1.5E+02 0.0032 30.2 10.8 173 74-269 67-255 (255)
20 KOG1242|consensus 50.0 4.1E+02 0.0089 30.7 14.5 106 191-320 214-320 (569)
21 KOG1241|consensus 49.0 4.8E+02 0.01 31.3 15.0 299 193-529 319-637 (859)
22 KOG1991|consensus 48.7 2.1E+02 0.0046 34.8 12.5 59 28-86 387-454 (1010)
23 PF05004 IFRD: Interferon-rela 44.6 2E+02 0.0043 30.2 10.6 118 33-152 154-286 (309)
24 KOG0889|consensus 44.4 3E+02 0.0066 38.1 13.8 157 132-325 1026-1202(3550)
25 cd03567 VHS_GGA VHS domain fam 42.0 1.1E+02 0.0024 28.5 7.4 107 28-141 16-132 (139)
26 PF08064 UME: UME (NUC010) dom 41.3 93 0.002 27.5 6.5 55 73-130 34-88 (107)
27 KOG1062|consensus 39.4 6.6E+02 0.014 30.3 14.3 249 59-343 112-378 (866)
28 PF04826 Arm_2: Armadillo-like 39.0 53 0.0011 33.6 5.2 70 97-174 55-124 (254)
29 cd00020 ARM Armadillo/beta-cat 35.9 58 0.0012 27.2 4.2 91 74-172 27-118 (120)
30 PF04499 SAPS: SIT4 phosphatas 31.5 3.5E+02 0.0076 30.3 10.5 34 292-327 62-95 (475)
31 cd00197 VHS_ENTH_ANTH VHS, ENT 31.2 1.2E+02 0.0026 26.5 5.6 58 27-88 14-71 (115)
32 PF00790 VHS: VHS domain; Int 28.8 2.2E+02 0.0047 26.1 7.1 94 29-126 21-119 (140)
33 cd07920 Pumilio Pumilio-family 27.9 6.5E+02 0.014 25.5 16.0 52 27-86 18-69 (322)
34 PF02172 KIX: KIX domain; Int 27.9 46 0.001 28.5 2.2 29 14-42 20-48 (81)
35 KOG0212|consensus 27.3 1E+03 0.023 27.7 13.3 75 230-305 307-390 (675)
36 PF08506 Cse1: Cse1; InterPro 26.3 8.5E+02 0.018 26.3 14.4 208 139-358 133-363 (370)
37 PF02985 HEAT: HEAT repeat; I 26.1 1.3E+02 0.0028 20.3 3.8 29 98-126 2-30 (31)
38 PF10508 Proteasom_PSMB: Prote 25.3 1.4E+02 0.003 33.4 6.0 75 95-175 289-367 (503)
39 PF12719 Cnd3: Nuclear condens 25.1 3.1E+02 0.0067 28.2 8.2 91 74-177 3-96 (298)
40 PF03586 Herpes_UL36: Herpesvi 23.9 2.3E+02 0.005 29.3 6.7 50 352-409 112-161 (253)
41 PF09324 DUF1981: Domain of un 22.7 1.1E+02 0.0023 26.1 3.5 38 490-527 14-56 (86)
42 PF08167 RIX1: rRNA processing 22.3 4.1E+02 0.0089 25.1 7.8 110 58-175 29-144 (165)
43 KOG2274|consensus 22.2 1.5E+03 0.033 27.8 13.9 119 108-265 503-625 (1005)
44 cd00256 VATPase_H VATPase_H, r 22.1 3.3E+02 0.0071 30.3 8.0 123 67-203 67-195 (429)
45 PRK11832 putative DNA-binding 21.7 1.8E+02 0.0039 29.2 5.4 82 256-345 100-187 (207)
46 smart00582 RPR domain present 21.5 4.1E+02 0.0088 23.2 7.2 73 29-105 11-83 (121)
47 cd03572 ENTH_epsin_related ENT 20.8 2.5E+02 0.0055 25.8 5.7 54 29-87 17-71 (122)
48 cd03569 VHS_Hrs_Vps27p VHS dom 20.7 5.4E+02 0.012 23.9 8.1 95 28-126 19-115 (142)
49 PF14225 MOR2-PAG1_C: Cell mor 20.5 5.4E+02 0.012 26.5 8.8 95 247-351 147-242 (262)
50 cd03562 CID CID (CTD-Interacti 20.4 5.5E+02 0.012 22.3 7.8 81 30-114 17-97 (114)
51 KOG2023|consensus 20.2 3.3E+02 0.0071 32.3 7.5 85 107-206 185-269 (885)
No 1
>KOG1877|consensus
Probab=100.00 E-value=1.4e-104 Score=877.49 Aligned_cols=467 Identities=44% Similarity=0.725 Sum_probs=411.5
Q ss_pred ccccCCCCChhhhhhhcccCcCCCCCCCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHH
Q psy6027 2 CMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQL 81 (531)
Q Consensus 2 ~C~cCp~~rPrykkLV~~~YP~~p~~~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~L 81 (531)
||+|||+|||||||||++|||++||+|||+++|+||||||+|||+||||||.||++|++||++|+|+|+|+|+|+||++|
T Consensus 4 ~c~cc~alR~RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kL 83 (819)
T KOG1877|consen 4 MCCCCPALRPRYKKLVDNIFPRSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKL 83 (819)
T ss_pred eeeecHHHHHHHHHHHHHhCCCCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHH
Q psy6027 82 LAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKL 161 (531)
Q Consensus 82 l~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~ 161 (531)
+.+||+| +|+||++||+||+.||++++++|+++||++|++|+++++|||+||++||+||++||+|||+. ++++.+..+
T Consensus 84 L~~C~eq-~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~l 161 (819)
T KOG1877|consen 84 LQACKEQ-INLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER-GDDDMKDCL 161 (819)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc-cchhhhhhc
Confidence 9999998 99999999999999999999999999999999999999999999999999999999999998 677899999
Q ss_pred HHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCC-----CCCCCCCCCCccccccccCCCCChHHHHH
Q psy6027 162 RLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGH-----YQSPADPEPEAEETGKMMNLQEDPPALAE 236 (531)
Q Consensus 162 R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~-----~~~~~~~~p~~~~~d~~~~~~e~p~~lA~ 236 (531)
|.|||+||+||||+|++|.+.+++|+.+|+|+|||++++|++..+. .+++..+.+.....++ ..+|++||+
T Consensus 162 r~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~----~~~p~vla~ 237 (819)
T KOG1877|consen 162 RAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDK----TSDPKVLAE 237 (819)
T ss_pred cHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCc----ccCcchhHH
Confidence 9999999999999999999999999999999999999999985542 2222111111111222 446999999
Q ss_pred HHHHHHHhhhhhh-hHHHHHHHHhhhccCCCCCCC-chhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcC--CCChHHH
Q psy6027 237 TCLRELMSRASFN-HVKNVIQPVLIHFDHHALWNP-NIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHH--SSPSLIR 312 (531)
Q Consensus 237 ~CLr~l~~~a~~t-~vr~vl~~vl~~lD~~~~W~~-~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~--~~~p~~r 312 (531)
+|+|+|+++|.++ ++|.+++|+|.|+|.|..|.| ||||+++|+++++++++|++|.|+++++.|||++. .+.|.++
T Consensus 238 ~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~ 317 (819)
T KOG1877|consen 238 RCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLG 317 (819)
T ss_pred HHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCcccc
Confidence 9999999999877 899999999999999999999 59999999999999999999999999999999984 5666777
Q ss_pred HHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHH
Q psy6027 313 AKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALF 392 (531)
Q Consensus 313 ~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~~~~~l 392 (531)
..||.+.. +.+++. ++|+++.++++++++|||+++ +. . ...+.+.+.-
T Consensus 318 ~~iv~~~~--~~i~~~-~v~ps~l~i~n~l~rhLR~si-------~~----------s-~~~~~~~~~~----------- 365 (819)
T KOG1877|consen 318 LSIVLVSI--ALIAAT-SVGPSVLIIFNDLLRHLRKSI-------SF----------S-DDGNIGLETD----------- 365 (819)
T ss_pred chhHHHHH--HHHHhc-ccchHHHHHHHHHHHHHHhhc-------cc----------c-ccccCCchhh-----------
Confidence 77777655 334333 899999999999999999994 44 1 0122221110
Q ss_pred hhcccccCcchhhHHHHHHHHHhhhccccccchhHHHhhcCCCCccchhhhhheecccCCcccccCCCchhhHHHHHHHH
Q psy6027 393 TLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMK 472 (531)
Q Consensus 393 ~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll~~~~~~~~~lp~~~k~~~~~f~~~k~~~~~~~~~~~~~~~~~q~~l~~ 472 (531)
..-.+++++++. .++...+.|++++|||||.++|+|++++||..+ ..+..++.++|.|+++
T Consensus 366 ----------~~~~~~e~~~q~-------~li~~~~~~~~~~P~~q~~~vm~~~~~~v~~~s--k~~~~~~~liq~~~~~ 426 (819)
T KOG1877|consen 366 ----------NGNYMIEAVVQE-------ALIQLTKKFANTLPDYQKMAVMLFIMSKVPDLS--KPSILGELLIQAMLLK 426 (819)
T ss_pred ----------hhHHHHHHHHHH-------HHHHHHHhhcccCchHHHHHHHHhhcccccccC--CccccHHHHHHHHHHH
Confidence 001445555543 689999999999999999999999999999655 2356699999999999
Q ss_pred HHHHhhccceeeeecccCCcccHHHHHhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 473 SLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIE 525 (531)
Q Consensus 473 ~ll~v~~~~~~~~~~~~~~~~fl~~ll~~~~~~d~~~r~~v~~~~~~~~~~~~ 525 (531)
++|+|+++|++..++.+||++||++|+..++++|+++|+.+++|||+-+++-+
T Consensus 427 s~L~~s~s~~i~~~~l~~~sS~L~sll~~~l~r~~~~~~~t~eil~sl~d~~~ 479 (819)
T KOG1877|consen 427 SLLSVSTSYQIVSVALAFPSSFLDSLLSTALMRDAELRLVTLEILHSLKDSHD 479 (819)
T ss_pred HHhhhhhcceeeeehhhccHHHhhhhhhhhcCcccchhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999887643
No 2
>KOG1877|consensus
Probab=99.24 E-value=1.8e-11 Score=138.01 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhcC-CCCCcchhhhHHHHHH
Q psy6027 311 IRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTS-TTLSDSQKYNLHALVA 389 (531)
Q Consensus 311 ~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a~~~-~~l~~~~r~~~~a~~~ 389 (531)
+|.++.++-..+-.+.+.+.+.+.++++++++...+..+..++|+|++++|+++++|++++.+ +++|+++||+|||+++
T Consensus 512 ~kk~~~~i~~~~~~~~~~~~~~~~n~~~~~~~~sl~~i~~~~~e~li~~~~~~~~l~~ls~~~~~~lp~~~r~~i~al~a 591 (819)
T KOG1877|consen 512 MKKNSQQIYRLLYSITATSDNVPENYEAIYNTASLILIEKSINEVLIELFRLALTLQQLSLMNERPLPNSRRRSIFALAA 591 (819)
T ss_pred HHhchHHHHHHHHHhhhhhhcchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccHHHHHH
Confidence 355566655555555566677889999999999999999999999999999999999999987 7899999999999999
Q ss_pred HHHhhcccccCcchhhHHHHHHHHHhhh--ccccccchh---HHHhhcCCCCc-cchhhh-hheecccC
Q psy6027 390 ALFTLVPLVSPITNIRDYVNKTIAARQE--HKTYHLLPE---LREFAANLPDY-QKTEIL-VFIISKVL 451 (531)
Q Consensus 390 ~~l~l~s~~~~~p~~~q~~~~vie~R~~--~~~~~ll~~---~~~~~~~lp~~-~k~~~~-~f~~~k~~ 451 (531)
+|++|+||..++|++|+|.++|++.|.+ ++|+.+.|. +.++.+-.+.. .+..+. +|-.+++.
T Consensus 592 s~lv~~s~~~~i~~l~~~~~~v~D~~~~a~~~~~~d~~~ass~l~~~~~~~~s~s~~~~~~~v~k~l~~ 660 (819)
T KOG1877|consen 592 SYLVLISQAFAIPTLDPFLQKVDDCRLEAVEGPSSDDNDASSTLSEIALAAESLSRELPALMVVKELIK 660 (819)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHhccCcccCchhhhhhHHHHHhhcccccccccHHHHHHHHHh
Confidence 9999999999999999999999999999 999977776 66666666663 333333 45444444
No 3
>KOG2023|consensus
Probab=94.04 E-value=4.8 Score=46.35 Aligned_cols=391 Identities=20% Similarity=0.216 Sum_probs=182.1
Q ss_pred CCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhh---hhhhcccchhhhhh
Q psy6027 108 LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ---GVIRKTVSDDLVEN 184 (531)
Q Consensus 108 ~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~---~vV~k~~sd~L~~~ 184 (531)
.+++.|.--|..|+-.-....|. ......++|..-.+.-+...++ .+|.|=. +.... -...+.
T Consensus 227 ~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~dE~---------VALEACEFwla~aeq---pi~~~~ 292 (885)
T KOG2023|consen 227 EDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDVDEN---------VALEACEFWLALAEQ---PICKEV 292 (885)
T ss_pred CCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCcchh---------HHHHHHHHHHHHhcC---cCcHHH
Confidence 57777777788777666555553 5555666666655544443222 2233311 11110 001111
Q ss_pred cccccccchhHHHHHhhccCCCC-------CC-------CCCCCCC------------Cccccccc---cCCCCChHHHH
Q psy6027 185 IWESTHMEKIIPSLLFNMQESGH-------YQ-------SPADPEP------------EAEETGKM---MNLQEDPPALA 235 (531)
Q Consensus 185 i~e~~~~d~IVp~iL~Nl~~~~~-------~~-------~~~~~~p------------~~~~~d~~---~~~~e~p~~lA 235 (531)
. ..++|++||++|.+|-.++. .+ ++++-.| .+.++|.. .|+...-.+|-
T Consensus 293 L--~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWN 370 (885)
T KOG2023|consen 293 L--QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWN 370 (885)
T ss_pred H--HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccccccc
Confidence 1 34789999999999964431 00 1111111 01111211 11111224552
Q ss_pred -HHH-------HHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHh-hccCcch--hHHHHHHHhhhc
Q psy6027 236 -ETC-------LRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSV-QSQYSHL--IVNCILAYLNDH 304 (531)
Q Consensus 236 -~~C-------Lr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~-q~Q~~~~--vls~Lv~HLd~~ 304 (531)
+.| |-++++.. +-.++=|+++-.=.+..|.-+.-++-.+..|+.-+ ++=+.|+ ++-.++..|+.|
T Consensus 371 LRkCSAAaLDVLanvf~~e----lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDE----LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK 446 (885)
T ss_pred HhhccHHHHHHHHHhhHHH----HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC
Confidence 233 33444333 44555666664444577988888899999999865 7767787 777777777665
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHhhhcCCCCCcchhhh
Q psy6027 305 HSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLT-LLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYN 383 (531)
Q Consensus 305 ~~~~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLr-hLr~sL~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~ 383 (531)
. |-+|.=--.+++.-..-..... .-+.+-.++. +||+.|-+.--|.|--=.++|.=+=. ..+.|-++---=
T Consensus 447 k---plVRsITCWTLsRys~wv~~~~----~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~-A~~eLVp~l~~I 518 (885)
T KOG2023|consen 447 K---PLVRSITCWTLSRYSKWVVQDS----RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE-AGEELVPYLEYI 518 (885)
T ss_pred c---cceeeeeeeeHhhhhhhHhcCC----hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 3 5444322223332222211111 1122222222 23333334444433311111100000 001121111111
Q ss_pred HHHHHHHH-----HhhcccccCcchhhHHHHHHHHHhhhccccccchhHHHhhcCCCCccchhhhhh-eecccCC---cc
Q psy6027 384 LHALVAAL-----FTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVF-IISKVLS---TT 454 (531)
Q Consensus 384 ~~a~~~~~-----l~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll~~~~~~~~~lp~~~k~~~~~f-~~~k~~~---~~ 454 (531)
+..++-|+ =||+--.-||.+|.++|-.-...++ ---.|+|++-.-=..|+|-+|.=.-++ -.+-|+. .+
T Consensus 519 L~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~--YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 519 LDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPA--YIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVG 596 (885)
T ss_pred HHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH--HHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcc
Confidence 22222221 1333333344555444421111111 000467777777777777776433322 1111110 01
Q ss_pred cc----cCCCchhhHHHHHHHHHHHHhhcccee-----------------------eeec-ccCCcccHHHHHhhhccCC
Q psy6027 455 YR----ESNKSEHTLVQNMFMKSLLMVSGKYTC-----------------------LHIS-SAFPLAFLEPLLKILQSND 506 (531)
Q Consensus 455 ~~----~~~~~~~~~~q~~l~~~ll~v~~~~~~-----------------------~~~~-~~~~~~fl~~ll~~~~~~d 506 (531)
.- |-...-=+.+|+- ++-+.++....+- .++. =.+++..++-+|.-++.+-
T Consensus 597 F~P~~~~Vy~Rc~~il~~t-~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 597 FLPYAQPVYQRCFRILQKT-LQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred ccccCHHHHHHHHHHHHHH-HHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 11 1123333455544 4555544432221 1222 2457778889999999999
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhh
Q psy6027 507 AEIRLLVNKEKARKKKKIESHVK 529 (531)
Q Consensus 507 ~~~r~~v~~~~~~~~~~~~~~~~ 529 (531)
||+|+----++-.--|---+||+
T Consensus 676 peVRQS~FALLGDltk~c~~~v~ 698 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVI 698 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888888776666556654
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.08 E-value=17 Score=39.51 Aligned_cols=231 Identities=18% Similarity=0.208 Sum_probs=134.5
Q ss_pred hhHHHHHHhhCCchh--hhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCch
Q psy6027 34 MEKLTFYALSSPEKL--DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPD 111 (531)
Q Consensus 34 lskL~yYA~s~P~KL--~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~ 111 (531)
+.-|..|+...|..- .++-..+...+. ..+-.|.+++.+.++.-.+.+ . ....+.+.+..+|.+++++
T Consensus 213 l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------s~~~~V~~e~~~~i~~l~~~~--~-~~~~~~~~L~~lL~s~~~n 282 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADKNRIIEPLLNLLQ-------SSSPSVVYEAIRLIIKLSPSP--E-LLQKAINPLIKLLSSSDPN 282 (526)
T ss_dssp HHHHTTSTSSSHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSSSH--H-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHhcccCChhhhhHHHHHHHHHHHhh-------ccccHHHHHHHHHHHHhhcch--H-HHHhhHHHHHHHhhcccch
Confidence 344455555555555 334444443333 445668888888888655543 3 6788888899999999999
Q ss_pred hHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccccccc
Q psy6027 112 LQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHM 191 (531)
Q Consensus 112 l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~ 191 (531)
++..|.+++..++... +.+.+ ...++ .| +-...+| .-+|...|..|..++.. .+.
T Consensus 283 vr~~~L~~L~~l~~~~---~~~v~-~~~~~-~~---~l~~~~d----~~Ir~~~l~lL~~l~~~-------------~n~ 337 (526)
T PF01602_consen 283 VRYIALDSLSQLAQSN---PPAVF-NQSLI-LF---FLLYDDD----PSIRKKALDLLYKLANE-------------SNV 337 (526)
T ss_dssp HHHHHHHHHHHHCCHC---HHHHG-THHHH-HH---HHHCSSS----HHHHHHHHHHHHHH--H-------------HHH
T ss_pred hehhHHHHHHHhhccc---chhhh-hhhhh-hh---eecCCCC----hhHHHHHHHHHhhcccc-------------cch
Confidence 9999999988887554 23444 22222 22 1111233 33777788888887762 244
Q ss_pred chhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCc
Q psy6027 192 EKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPN 271 (531)
Q Consensus 192 d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~ 271 (531)
..|++.++.-+.+.. +.+...-+...+..+..+- .+.....++.++..+...+.-...
T Consensus 338 ~~Il~eL~~~l~~~~---------------------d~~~~~~~i~~I~~la~~~-~~~~~~~v~~l~~ll~~~~~~~~~ 395 (526)
T PF01602_consen 338 KEILDELLKYLSELS---------------------DPDFRRELIKAIGDLAEKF-PPDAEWYVDTLLKLLEISGDYVSN 395 (526)
T ss_dssp HHHHHHHHHHHHHC-----------------------HHHHHHHHHHHHHHHHHH-GSSHHHHHHHHHHHHHCTGGGCHC
T ss_pred hhHHHHHHHHHHhcc---------------------chhhhhhHHHHHHHHHhcc-CchHHHHHHHHHHhhhhccccccc
Confidence 568888886662110 0012222333344443332 344566777777777765422223
Q ss_pred hhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 272 IFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 272 ~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
. ++..+..++.-. .+.+.-++..++++++. ..+|..++.++.++++-...
T Consensus 396 ~-~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~--~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 396 E-IINVIRDLLSNN-PELREKILKKLIELLED--ISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp H-HHHHHHHHHHHS-TTTHHHHHHHHHHHHTS--SSSHHHHHHHHHHHHHHCHH
T ss_pred h-HHHHHHHHhhcC-hhhhHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccCCc
Confidence 3 333344443222 33445678899999888 55788899999988865444
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.14 E-value=10 Score=44.30 Aligned_cols=331 Identities=15% Similarity=0.160 Sum_probs=171.9
Q ss_pred HHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhch
Q psy6027 58 RASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY 137 (531)
Q Consensus 58 R~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y 137 (531)
|-++-+-+++...++|++.++-.|-+..+-. ....-...+.++-.+|++++.++.+++...+.+.+-..+.. +-+. -
T Consensus 253 kk~~~l~~kQeqLlrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-~~m~-~ 329 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK-DEMA-E 329 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-HHHH-H
Confidence 4445566677788888888877777776654 56666778888888999999998887665444443222211 1111 1
Q ss_pred HHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhh---------------hhcccchhhhhhcccccccchhHHHHHhhc
Q psy6027 138 DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV---------------IRKTVSDDLVENIWESTHMEKIIPSLLFNM 202 (531)
Q Consensus 138 ~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~v---------------V~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl 202 (531)
.++|+++..|-.....+ ++..+|+.|-.. +.+. ..-+-++ +.-.++=.+|.|+
T Consensus 330 ~giV~kL~kLl~s~~~~------l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkL-----v~LL~d~-~~~~val~iLy~L 397 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENED------LVNVALRLLFNLSFDPELRSQMVSLGLIPKL-----VELLKDP-NFREVALKILYNL 397 (708)
T ss_pred cCCHHHHHHHhcCCCHH------HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHH-----HHHhCCC-chHHHHHHHHHHh
Confidence 24777777777654321 233333333211 1111 1111111 2223445666666
Q ss_pred cCCCCCCCC---------------CCCCCC----------cccccc-----------------ccCCCCChHHHHHHHHH
Q psy6027 203 QESGHYQSP---------------ADPEPE----------AEETGK-----------------MMNLQEDPPALAETCLR 240 (531)
Q Consensus 203 ~~~~~~~~~---------------~~~~p~----------~~~~d~-----------------~~~~~e~p~~lA~~CLr 240 (531)
...++.... ..+.+. ....++ ....-.+ .+...++|
T Consensus 398 S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D--~lLlKlIR 475 (708)
T PF05804_consen 398 SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD--PLLLKLIR 475 (708)
T ss_pred ccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc--HHHHHHHH
Confidence 543321110 000000 000000 0000001 12234556
Q ss_pred HHHhhhhh--hhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHh-------hccCcchhHHHHHHHhhhcCCCChHH
Q psy6027 241 ELMSRASF--NHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSV-------QSQYSHLIVNCILAYLNDHHSSPSLI 311 (531)
Q Consensus 241 ~l~~~a~~--t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~-------q~Q~~~~vls~Lv~HLd~~~~~~p~~ 311 (531)
++-.+... ...-..+.++.+.+.+.+ +..|.+.|+..+.... +.=..|-++..+.++|.... .++.+
T Consensus 476 NiS~h~~~~k~~f~~~i~~L~~~v~~~~---~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~-~~dDl 551 (708)
T PF05804_consen 476 NISQHDGPLKELFVDFIGDLAKIVSSGD---SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA-SEDDL 551 (708)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC-CChHH
Confidence 66544311 112334455555555554 4578888888876632 21135777888888886543 45667
Q ss_pred HHHHHHHHHHHHHHhhhccCCccH--HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhcCC---------C-----
Q psy6027 312 RAKIADALSKIISIAASESIGPTV--LEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTST---------T----- 375 (531)
Q Consensus 312 r~~Iv~vls~lv~~a~~~s~g~sv--~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a~~~~---------~----- 375 (531)
...+|-+++.++.- ....+.. -+++..++..|+..-..+|.|++. .++.+.+-.-++ .
T Consensus 552 ~LE~Vi~~gtla~d---~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi---l~~f~~ll~h~~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 552 LLEVVILLGTLASD---PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI---LYVFYQLLFHEETREVLLKETEIPAYL 625 (708)
T ss_pred HHHHHHHHHHHHCC---HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHH---HHHHHHHHcChHHHHHHHhccchHHHH
Confidence 77777776654322 1111111 267777788887776688888765 455554432111 1
Q ss_pred ---CCcchhhhHHHHHHHHHhhcccc-------cCcchhhHHHHHHHHHhh
Q psy6027 376 ---LSDSQKYNLHALVAALFTLVPLV-------SPITNIRDYVNKTIAARQ 416 (531)
Q Consensus 376 ---l~~~~r~~~~a~~~~~l~l~s~~-------~~~p~~~q~~~~vie~R~ 416 (531)
+.+.+ --+..++...|..+.-. +..+.|.-|=.|-+|+..
T Consensus 626 idL~~d~N-~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 626 IDLMHDKN-AEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVE 675 (708)
T ss_pred HHHhcCCC-HHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 12222 23566677777776655 446667777776666653
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.54 E-value=60 Score=35.37 Aligned_cols=233 Identities=17% Similarity=0.140 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCCh
Q psy6027 230 DPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPS 309 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p 309 (531)
|..+.+-.||..+.... ...+. -....+.++...+ +.......+..+...+...+-..|+..|++++.. ..++
T Consensus 282 nvr~~~L~~L~~l~~~~-~~~v~-~~~~~~~~l~~~~---d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~--~~d~ 354 (526)
T PF01602_consen 282 NVRYIALDSLSQLAQSN-PPAVF-NQSLILFFLLYDD---DPSIRKKALDLLYKLANESNVKEILDELLKYLSE--LSDP 354 (526)
T ss_dssp HHHHHHHHHHHHHCCHC-HHHHG-THHHHHHHHHCSS---SHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--C--H
T ss_pred hhehhHHHHHHHhhccc-chhhh-hhhhhhheecCCC---ChhHHHHHHHHHhhcccccchhhHHHHHHHHHHh--ccch
Confidence 56788888888886654 12222 2222233443222 2223333344444444555666799999999822 2357
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHH
Q psy6027 310 LIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCI--ELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHAL 387 (531)
Q Consensus 310 ~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~--sL~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~ 387 (531)
.++..++..+..++..- .+..-..+..++..++. ....+|++..+..+ -..+++ .+.-.+..
T Consensus 355 ~~~~~~i~~I~~la~~~-----~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~l-------l~~~~~---~~~~~l~~- 418 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKF-----PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDL-------LSNNPE---LREKILKK- 418 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-----GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHH-------HHHSTT---THHHHHHH-
T ss_pred hhhhhHHHHHHHHHhcc-----CchHHHHHHHHHHhhhhccccccchHHHHHHHH-------hhcChh---hhHHHHHH-
Confidence 79999999888665432 22333445555555553 22244444333222 212221 12212222
Q ss_pred HHHHHhhcccccCcchhhHHHHHHHHHhhhccccccchhHHHhhcCCCCccc-hhhh-hheecccCCcccccCCCchhhH
Q psy6027 388 VAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQK-TEIL-VFIISKVLSTTYRESNKSEHTL 465 (531)
Q Consensus 388 ~~~~l~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll~~~~~~~~~lp~~~k-~~~~-~f~~~k~~~~~~~~~~~~~~~~ 465 (531)
+..++.. ..-|.+ ++ ..+=-+|+++...++.+. .+++ .++.. ...++..
T Consensus 419 ---L~~~l~~-~~~~~~----------~~-----~~~wilGEy~~~~~~~~~~~~~~~~l~~~----------~~~~~~~ 469 (526)
T PF01602_consen 419 ---LIELLED-ISSPEA----------LA-----AAIWILGEYGELIENTESAPDILRSLIEN----------FIEESPE 469 (526)
T ss_dssp ---HHHHHTS-SSSHHH----------HH-----HHHHHHHHHCHHHTTTTHHHHHHHHHHHH----------HTTSHHH
T ss_pred ---HHHHHHH-hhHHHH----------HH-----HHHhhhcccCCcccccccHHHHHHHHHHh----------hccccHH
Confidence 2233332 222222 22 455567777777766221 1222 22111 1224567
Q ss_pred HHHHHHHHHHHhhccceeeeecccCCcccHHHHHhhhc--cCChhHHHHHHHHHH
Q psy6027 466 VQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQ--SNDAEIRLLVNKEKA 518 (531)
Q Consensus 466 ~q~~l~~~ll~v~~~~~~~~~~~~~~~~fl~~ll~~~~--~~d~~~r~~v~~~~~ 518 (531)
+|..+|.++.+....+....+. ...++-+++.+- ..|+|+|.-..+.+.
T Consensus 470 vk~~ilt~~~Kl~~~~~~~~~~----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 470 VKLQILTALAKLFKRNPENEVQ----NEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHHHHHSCSTTHH----HHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9999999999999777643221 267888888888 899999988776654
No 7
>KOG2171|consensus
Probab=82.83 E-value=74 Score=38.89 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=105.3
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhcc
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 152 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 152 (531)
.++-|+..+.+.--.+ ..-+...++.+...-+......+++.+...+..|+...++.++-++.|..++|.....+.+..
T Consensus 137 ~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i 215 (1075)
T KOG2171|consen 137 SALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI 215 (1075)
T ss_pred HHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh
Confidence 6777777777765554 333445566666555554444488889898888875443222556666666665555554432
Q ss_pred C-----------------------------------------ChhHHHHHHHHHHhhhhhhhhcccchhhhhhccccccc
Q psy6027 153 A-----------------------------------------DVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHM 191 (531)
Q Consensus 153 ~-----------------------------------------d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~ 191 (531)
. +.+.-+.+|-..|+-|.+.+.. +....=-.+.-.
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~----Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY----APAMCKKLALLG 291 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh----hHHHhhhchhhh
Confidence 2 1123344676666655544432 111000011135
Q ss_pred chhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHH-hhhccCCCCCCC
Q psy6027 192 EKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPV-LIHFDHHALWNP 270 (531)
Q Consensus 192 d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~v-l~~lD~~~~W~~ 270 (531)
+.+||++|.-|.+.+..+ -|....+...|++++|...|++||--+..+=...+|-.++-+. =.++-+.+ |.-
T Consensus 292 ~~lv~~~l~~mte~~~D~------ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~-w~~ 364 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDD------EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE-WKE 364 (1075)
T ss_pred ccHHHHHHHhcCCcccch------hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-HHH
Confidence 788999998886432211 1211111112336789999999987775443344433333332 23444444 765
Q ss_pred chhHHHHHHHHH
Q psy6027 271 NIFATHVLRMLM 282 (531)
Q Consensus 271 ~~fA~~~f~~i~ 282 (531)
+.=|.-.+..+.
T Consensus 365 R~AaL~Als~i~ 376 (1075)
T KOG2171|consen 365 RHAALLALSVIA 376 (1075)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 8
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.59 E-value=3.6 Score=36.04 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHH
Q psy6027 161 LRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLR 240 (531)
Q Consensus 161 ~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr 240 (531)
-|..||-||+++.-. |...+ ..++++|+|.+|..+.+. +....+.|-++|.
T Consensus 2 ~R~ggli~Laa~ai~-----l~~~~--~~~l~~Il~pVL~~~~D~----------------------d~rVRy~AcEaL~ 52 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIA-----LGKDI--SKYLDEILPPVLKCFDDQ----------------------DSRVRYYACEALY 52 (97)
T ss_pred chhHHHHHHHHHHHH-----chHhH--HHHHHHHHHHHHHHcCCC----------------------cHHHHHHHHHHHH
Confidence 488999999998653 33333 558999999999888532 2235677889999
Q ss_pred HHHhhhhh---hhHHHHHHHHhhhcc
Q psy6027 241 ELMSRASF---NHVKNVIQPVLIHFD 263 (531)
Q Consensus 241 ~l~~~a~~---t~vr~vl~~vl~~lD 263 (531)
++...+.. .....|.+-+++-..
T Consensus 53 ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 53 NISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99655422 223444444444333
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.25 E-value=47 Score=32.18 Aligned_cols=178 Identities=11% Similarity=0.112 Sum_probs=88.6
Q ss_pred CCchhHHHhHHHHHHHHhccC---CchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhh
Q psy6027 108 LDPDLQILATNSFVRFANIEE---DTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVEN 184 (531)
Q Consensus 108 ~~~~l~i~a~~tf~~F~~~~~---D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~ 184 (531)
.+=+-++-|...+..++.... +.+.|...+..++..+... .. +.|..+-..++..++.++...+ ..
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~----l~--d~Rs~v~~~A~~~l~~l~~~l~-----~~ 87 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQ----LS--DLRSKVSKTACQLLSDLARQLG-----SH 87 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-----S---HH---HHHHHHHHHHHHHHHHG-----GG
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHH----Hh--hhHHHHHHHHHHHHHHHHHHHh-----Hh
Confidence 566667778888888876552 2223333333333233322 22 3666777788888888877543 22
Q ss_pred cccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccC
Q psy6027 185 IWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDH 264 (531)
Q Consensus 185 i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~ 264 (531)
. ..+++.++|.+|.-+.+. ......-|..||..|...++. ...++-+.+...-+
T Consensus 88 -~-~~~~~~~l~~Ll~~~~~~----------------------~~~i~~~a~~~L~~i~~~~~~--~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 88 -F-EPYADILLPPLLKKLGDS----------------------KKFIREAANNALDAIIESCSY--SPKILLEILSQGLK 141 (228)
T ss_dssp -G-HHHHHHHHHHHHHGGG-------------------------HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT
T ss_pred -H-HHHHHHHHHHHHHHHccc----------------------cHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHHh
Confidence 1 235778999888776421 113456699999999987751 23454444554445
Q ss_pred CCCCCCchhHHHHHHHHHHHhh---ccCc-chhHHHHHHHhhhc-CCCChHHHHHHHHHHHHH
Q psy6027 265 HALWNPNIFATHVLRMLMYSVQ---SQYS-HLIVNCILAYLNDH-HSSPSLIRAKIADALSKI 322 (531)
Q Consensus 265 ~~~W~~~~fA~~~f~~i~~s~q---~Q~~-~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~l 322 (531)
++.|.....+..++..+....+ .... ...+..+++-+... ...+|.+|..--+++..+
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 5555445555555555544332 1111 11123333333333 344577777666655544
No 10
>KOG0213|consensus
Probab=67.73 E-value=2.5e+02 Score=33.62 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=60.7
Q ss_pred CchhhhhHHHHHHHHHHH-HhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHH
Q psy6027 45 PEKLDRIGEYLYQRASRD-ISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRF 123 (531)
Q Consensus 45 P~KL~KIg~yLekR~~~D-l~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F 123 (531)
-..+|-+-.||+.-|.+- .|..|..-++|+-+| .++..|.. ||. ..++++||...|...+..+++.++.++...
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqI--ail~Gcsv--lph-l~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQI--AILSGCSV--LPH-LKPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHH--HHHhcchh--hhh-hHHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 356788888999888776 888898889988887 46677876 676 589999999999988888898888776655
Q ss_pred H
Q psy6027 124 A 124 (531)
Q Consensus 124 ~ 124 (531)
+
T Consensus 581 a 581 (1172)
T KOG0213|consen 581 A 581 (1172)
T ss_pred H
Confidence 4
No 11
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=66.25 E-value=25 Score=30.74 Aligned_cols=73 Identities=10% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhh
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCH 149 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~ 149 (531)
+|-.+.+.-..+..+ +.-+.+.++..|-..++.++..+|-.||+++...+.+..+. ....+..+.+.+++++.
T Consensus 6 gli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 6 GLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHc
Confidence 456777788888886 77777777777777777788889999999999988776543 44444444444444444
No 12
>KOG1242|consensus
Probab=60.92 E-value=3.1e+02 Score=31.60 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCC
Q psy6027 138 DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPE 217 (531)
Q Consensus 138 ~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~ 217 (531)
-.+||...+-.+.+.. .+|.+|..+|..+.+..-+ ..+..++|.+|+-|.+..
T Consensus 294 p~iiP~lsevl~DT~~------evr~a~~~~l~~~~svidN----------~dI~~~ip~Lld~l~dp~----------- 346 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKP------EVRKAGIETLLKFGSVIDN----------PDIQKIIPTLLDALADPS----------- 346 (569)
T ss_pred hHhhHHHHHHHccCCH------HHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhcCcc-----------
Confidence 3588888887776543 3899999999988775321 246789999999996432
Q ss_pred ccccccccCCCCChHHHHHHHHHHHHhhh--h--hhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHh-hccCcch
Q psy6027 218 AEETGKMMNLQEDPPALAETCLRELMSRA--S--FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSV-QSQYSHL 292 (531)
Q Consensus 218 ~~~~d~~~~~~e~p~~lA~~CLr~l~~~a--~--~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~-q~Q~~~~ 292 (531)
--...|++.+.... . ...-..+|.|++..-=+...-+...-+..++..|...+ -.|.==-
T Consensus 347 ---------------~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 347 ---------------CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred ---------------cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 11334555553321 0 11133455555543222222222344555666665554 2333334
Q ss_pred hHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHH
Q psy6027 293 IVNCILAYLNDHHS-SPSLIRAKIADALSKIIS 324 (531)
Q Consensus 293 vls~Lv~HLd~~~~-~~p~~r~~Iv~vls~lv~ 324 (531)
.+-.|+.-|++... -.|.+|.--..++..+..
T Consensus 412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 45666777777632 268999887777765544
No 13
>KOG2171|consensus
Probab=60.51 E-value=1.2e+02 Score=37.17 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=76.4
Q ss_pred eeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 71 VVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 71 V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
.+.++++++.+++.|.++ ..-|...++..+-..+...++++|--|.--+..-|....+. |-.-..+..+...++-+.
T Consensus 861 r~~av~~~~d~ie~~~~a-~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~--y~~v~~~~l~~L~~~iq~ 937 (1075)
T KOG2171|consen 861 RQWAVCIFDDLIEGCGEA-SAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGED--YAPVCSEALPLLVQVLQP 937 (1075)
T ss_pred HHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHHHcC
Confidence 568999999999999997 77788999999888888888888877665555555443332 444344444444444333
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy6027 151 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 203 (531)
Q Consensus 151 ~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~ 203 (531)
...-.|...+.+--...|+.-++.+ -|..-..|+++|+.|-.+-
T Consensus 938 ~~ar~Ee~~~ateNa~gaiaki~~~---------~~~~i~vdqvl~~~l~~LP 981 (1075)
T KOG2171|consen 938 PLARTEENRRATENAIGAIAKILLF---------NPNRIPVDQVLPAWLSWLP 981 (1075)
T ss_pred hhhhhHHHhHHHHHHHHHHHHHHHh---------CCccCcHHHHHHHHHHhCC
Confidence 2221233333444444444444332 2544458999999987773
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=59.84 E-value=3.6e+02 Score=32.06 Aligned_cols=261 Identities=10% Similarity=0.043 Sum_probs=129.7
Q ss_pred cchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCc
Q psy6027 31 KTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDP 110 (531)
Q Consensus 31 ~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~ 110 (531)
.+.+.-|.+-...+|.++...-.++.+ +..-+.. .+----+.|++-|..-.+.+ .-.+..+++-+...|.+.++
T Consensus 197 ~nAl~aL~eI~~~~~~~l~l~~~~~~~-Ll~~L~e---~~EW~Qi~IL~lL~~y~P~~--~~e~~~il~~l~~~Lq~~N~ 270 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKIESSNEWVNR-LVYHLPE---CNEWGQLYILELLAAQRPSD--KESAETLLTRVLPRMSHQNP 270 (746)
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHH-HHHHhhc---CChHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHhcCCCH
Confidence 445555566666677776554444422 2222211 11112235667665555543 22344555555556667787
Q ss_pred hhHHHhHHHHHHHHhccCCchhhhhch-HHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccccc
Q psy6027 111 DLQILATNSFVRFANIEEDTPSYHRRY-DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWEST 189 (531)
Q Consensus 111 ~l~i~a~~tf~~F~~~~~D~~~y~~~y-~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~ 189 (531)
.+...++.+|..+..... ++..+++ ..+...+..+.+ .+ ..+|.++|+.|.-++.+. .+-+..++ .
T Consensus 271 AVVl~Aik~il~l~~~~~--~~~~~~~~~rl~~pLv~L~s---s~----~eiqyvaLr~I~~i~~~~-P~lf~~~~---~ 337 (746)
T PTZ00429 271 AVVMGAIKVVANLASRCS--QELIERCTVRVNTALLTLSR---RD----AETQYIVCKNIHALLVIF-PNLLRTNL---D 337 (746)
T ss_pred HHHHHHHHHHHHhcCcCC--HHHHHHHHHHHHHHHHHhhC---CC----ccHHHHHHHHHHHHHHHC-HHHHHHHH---H
Confidence 777777788887764432 2333322 223344445532 22 238899999988777642 11111110 0
Q ss_pred cc-----chh-----HHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--hhhHHHHHHH
Q psy6027 190 HM-----EKI-----IPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--FNHVKNVIQP 257 (531)
Q Consensus 190 ~~-----d~I-----Vp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~t~vr~vl~~ 257 (531)
.| |.+ -=-||..+-+.+ +-.....+-..=..+.....+...+|.|-..|. ..-...+++-
T Consensus 338 ~Ff~~~~Dp~yIK~~KLeIL~~Lane~--------Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~ 409 (746)
T PTZ00429 338 SFYVRYSDPPFVKLEKLRLLLKLVTPS--------VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANL 409 (746)
T ss_pred hhhcccCCcHHHHHHHHHHHHHHcCcc--------cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 00 100 001111111000 000000000000011122456666666654442 2236677777
Q ss_pred HhhhccCCC-CCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy6027 258 VLIHFDHHA-LWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIIS 324 (531)
Q Consensus 258 vl~~lD~~~-~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~ 324 (531)
++.++++.. .| .-++.+++.|.+..+. .| ++..|+++++.....+|..|.+++.++++...
T Consensus 410 Ll~ll~~~~~~v---~e~i~vik~IlrkyP~--~~-il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 410 LLQIVDRRPELL---PQVVTAAKDIVRKYPE--LL-MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred HHHHhcCCchhH---HHHHHHHHHHHHHCcc--HH-HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 777776533 22 1256667777554432 23 67888888766667899999999999887543
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.12 E-value=1.3e+02 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCC
Q psy6027 229 EDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWN 269 (531)
Q Consensus 229 e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~ 269 (531)
++....|..|+.++..+-+...+...+-.++.+|.+...|.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~ 117 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHP 117 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccc
Confidence 35778899999999887556667888888888888876663
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=58.72 E-value=88 Score=30.28 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=94.8
Q ss_pred hhhHHHHHHhhC--CchhhhhHHHHH---HHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhc
Q psy6027 33 NMEKLTFYALSS--PEKLDRIGEYLY---QRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES 107 (531)
Q Consensus 33 ~lskL~yYA~s~--P~KL~KIg~yLe---kR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s 107 (531)
.+.+|.-++..+ ..-.+.+..+|. .-+.+.+.-.|..=++-++..+..|...++.. +.-|+..++..+-..+.+
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~ 105 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGD 105 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcc
Confidence 355555555555 344455555555 56666666677777778889999999999985 665666665555444445
Q ss_pred CCchhHHHhHHHHHHHHhccCCchhhhhchHHH-HHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhccc--chhhhhh
Q psy6027 108 LDPDLQILATNSFVRFANIEEDTPSYHRRYDFF-VSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTV--SDDLVEN 184 (531)
Q Consensus 108 ~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~-V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~--sd~L~~~ 184 (531)
....++..|..++..++..-. |.. .+ +..+...+.. .-...|...++.|..++.... .+.+.
T Consensus 106 ~~~~i~~~a~~~L~~i~~~~~----~~~---~~~~~~l~~~~~~------Kn~~vR~~~~~~l~~~l~~~~~~~~~l~-- 170 (228)
T PF12348_consen 106 SKKFIREAANNALDAIIESCS----YSP---KILLEILSQGLKS------KNPQVREECAEWLAIILEKWGSDSSVLQ-- 170 (228)
T ss_dssp --HHHHHHHHHHHHHHHTTS-----H-----HHHHHHHHHHTT-------S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred ccHHHHHHHHHHHHHHHHHCC----cHH---HHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHccchHhhhc--
Confidence 666777788888888875432 111 12 2222222222 224578888888888887653 11111
Q ss_pred cccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhh
Q psy6027 185 IWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSR 245 (531)
Q Consensus 185 i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~ 245 (531)
....++.+++++-..+.|. ..+....|..|+..+...
T Consensus 171 --~~~~~~~l~~~l~~~l~D~----------------------~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 --KSAFLKQLVKALVKLLSDA----------------------DPEVREAARECLWALYSH 207 (228)
T ss_dssp ---HHHHHHHHHHHHHHHTSS-----------------------HHHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHCCCC----------------------CHHHHHHHHHHHHHHHHH
Confidence 1112467888887777532 223567788998888543
No 17
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=57.98 E-value=33 Score=33.21 Aligned_cols=94 Identities=20% Similarity=0.378 Sum_probs=62.5
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhcc
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 152 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 152 (531)
-+-+.+..|+..|... +++ ..|++.+..=|. .+.|++++++..+.+++....+ ...++.+.++..|-.......
T Consensus 46 ~ayE~lytlLd~~~~~-~~~--~~~~~~v~~GL~-D~~DIk~L~~~~l~kl~~~~p~--~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSR-IDI--SEFLDRVEAGLK-DEHDIKMLCHLMLSKLAQLAPE--EVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp HHHHHHHHHHHSTCSS-S-H--HHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHS-HH--HHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHh-CCH--HHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHhhccC
Confidence 3567889999999986 763 444544443332 4999999999999999877543 466778999999988886543
Q ss_pred CC------hhHHHHHHHHHHhhhhhh
Q psy6027 153 AD------VTKRNKLRLAGIRGIQGV 172 (531)
Q Consensus 153 ~d------~e~~~r~R~aGL~aL~~v 172 (531)
.+ -|....+--+.|+++.++
T Consensus 120 k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 120 KENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp -TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHH
Confidence 32 255555666777776665
No 18
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.75 E-value=67 Score=33.30 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCCceeeHHHHHHHHHHHcccccccccHHH-------HHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHH
Q psy6027 67 RNGYVVIAMEAMDQLLAACHSQTLNLFVES-------FLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDF 139 (531)
Q Consensus 67 r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s-------~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~ 139 (531)
+..-++-.+..++.|+...+.- ..+|... .....-.+|+.+|.-++..++..++.+.....+. ..... +.
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~-~~~~~-~~ 146 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR-SEKLV-KE 146 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHH-HH
T ss_pred cHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc-ccchH-HH
Confidence 3445666677777777776653 5555541 1223333666677777777777777776555443 12101 45
Q ss_pred HHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhc
Q psy6027 140 FVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNM 202 (531)
Q Consensus 140 ~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl 202 (531)
+++.|.++-.+... .........|+++|+.+.+ .++....+|+. ..|+.+...+
T Consensus 147 ~l~~ll~~L~~~l~--~~~~~~~~~av~~L~~LL~---~~~~R~~f~~~----~~v~~l~~iL 200 (312)
T PF03224_consen 147 ALPKLLQWLSSQLS--SSDSELQYIAVQCLQNLLR---SKEYRQVFWKS----NGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHH-TT---HHHH---HHHHHHHHHHHT---SHHHHHHHHTH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHhC---cchhHHHHHhc----CcHHHHHHHH
Confidence 66666666554222 1234466899999999988 56777777873 4555555555
No 19
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=52.30 E-value=1.5e+02 Score=30.18 Aligned_cols=173 Identities=14% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcccc---cccccH-HHHHHHHH----HHHhcCCchhHHHhHHHHHHHHhcc--CCchhhhhchHHHHHH
Q psy6027 74 AMEAMDQLLAACHSQ---TLNLFV-ESFLKIVQ----KLLESLDPDLQILATNSFVRFANIE--EDTPSYHRRYDFFVSK 143 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~---~l~LFa-~s~L~Ii~----~LL~s~~~~l~i~a~~tf~~F~~~~--~D~~~y~~~y~~~V~~ 143 (531)
+-.++..|+..|.-. .-.++. ..+..|-+ .|++.++.---..+.++|..+|..- .+.+.+..--+..+..
T Consensus 67 ~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~ 146 (255)
T PF10350_consen 67 SSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDE 146 (255)
T ss_pred HHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 334666777666421 012222 22333322 2334466665556668888887531 1222444433444444
Q ss_pred HHhhhhhccCChhHHHHHHHHHHhh-hhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccc
Q psy6027 144 FSALCHSNYADVTKRNKLRLAGIRG-IQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETG 222 (531)
Q Consensus 144 f~~la~~~~~d~e~~~r~R~aGL~a-L~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d 222 (531)
..+.-....... ....=|.|||-- +.+++....+ ....-+...+..+|.--...... ..+
T Consensus 147 ~l~~i~~~~~~~-~~iTRRSAGLP~~i~aiL~ae~~-------~~~~ll~~~~~~Ll~ia~~~~~~-----------~~~ 207 (255)
T PF10350_consen 147 LLEAIESKGQQK-LSITRRSAGLPFLILAILSAEPS-------NSRPLLHRTMKSLLEIAKSPSTQ-----------HED 207 (255)
T ss_pred HHHHHhcccccc-cccccccCcHHHHHHHHHhcCCC-------cchhHHHHHHHHHHHHhcCCccc-----------ccc
Confidence 444443321110 012236799874 5566553210 11123455566555444321110 001
Q ss_pred cccCCCCChHHHHHHHHHHHHhhhhh-----hhHHHHHHHHhhhccCCCCCC
Q psy6027 223 KMMNLQEDPPALAETCLRELMSRASF-----NHVKNVIQPVLIHFDHHALWN 269 (531)
Q Consensus 223 ~~~~~~e~p~~lA~~CLr~l~~~a~~-----t~vr~vl~~vl~~lD~~~~W~ 269 (531)
. ..+.|.+=|..|||.||.-+.. .-+...+.-.++.|++.. |+
T Consensus 208 ~---~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~-Wa 255 (255)
T PF10350_consen 208 E---KSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPD-WA 255 (255)
T ss_pred c---ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCcc-CC
Confidence 1 1246999999999999875532 225556666677888765 63
No 20
>KOG1242|consensus
Probab=49.96 E-value=4.1e+02 Score=30.66 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=74.8
Q ss_pred cchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCC
Q psy6027 191 MEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNP 270 (531)
Q Consensus 191 ~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~ 270 (531)
+=.+.|++|.|..+. ......-|..+.+.+++.-+..-++.++-+++.-++.. .|..
T Consensus 214 iv~~lp~il~~~~d~----------------------~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrt 270 (569)
T KOG1242|consen 214 IVPILPSILTNFGDK----------------------INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRT 270 (569)
T ss_pred HHhhHHHHHHHhhcc----------------------chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhh
Confidence 447899999888422 22355668888899988777777999999987755555 8999
Q ss_pred chhHHHHHHHHHHHhhccCcchhHHHHHHHhhh-cCCCChHHHHHHHHHHH
Q psy6027 271 NIFATHVLRMLMYSVQSQYSHLIVNCILAYLND-HHSSPSLIRAKIADALS 320 (531)
Q Consensus 271 ~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~-~~~~~p~~r~~Iv~vls 320 (531)
+.-++..+..|.+..+-|.++.+.. ++.-|.. .....|.+|..=.+.+.
T Consensus 271 K~aslellg~m~~~ap~qLs~~lp~-iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSLCLPD-LIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhH-hhHHHHHHHccCCHHHHHHHHHHHH
Confidence 8889999999999888877665443 3344433 34566777665444444
No 21
>KOG1241|consensus
Probab=48.97 E-value=4.8e+02 Score=31.26 Aligned_cols=299 Identities=16% Similarity=0.178 Sum_probs=150.9
Q ss_pred hhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCch
Q psy6027 193 KIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNI 272 (531)
Q Consensus 193 ~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~ 272 (531)
-++|.+|+-|..-++.+ . +++=||.--|-.||.=+......--++.|+.-+=.++-+.+ |....
T Consensus 319 ~v~P~Ll~~L~kqde~~-------------d--~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pd-wr~re 382 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDD-------------D--DDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPD-WRNRE 382 (859)
T ss_pred HhhHHHHHHHHhCCCCc-------------c--cccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcc-hhhhh
Confidence 68999998885322111 0 11348888999998644433333334555544444665555 77777
Q ss_pred hHHHHHHHHHHHh-hccCcchhHHHHHHHhhhcCCCChH--HHHHHHHHHHHHHHHhhhccCCccHH--HHHHHHHHHHH
Q psy6027 273 FATHVLRMLMYSV-QSQYSHLIVNCILAYLNDHHSSPSL--IRAKIADALSKIISIAASESIGPTVL--EVLYTTLTLLC 347 (531)
Q Consensus 273 fA~~~f~~i~~s~-q~Q~~~~vls~Lv~HLd~~~~~~p~--~r~~Iv~vls~lv~~a~~~s~g~sv~--eal~~LLrhLr 347 (531)
-|+-.|..++.-- +.+..++|.+.+=.-+.... ||. ++......+..+..... +..++.+. ..+..++..|.
T Consensus 383 aavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 383 AAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred HHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHhh
Confidence 7777777776533 45666677666533333333 443 35555556555544432 33333322 33444444333
Q ss_pred Hhhc-cchhHHHHHHHHHHHHHhhhcC-CCCCcchhhhHHHHHHHHHhhcccccCcchhhH-HHHHHHHHhhhccccccc
Q psy6027 348 IELI-SDDTVVDFIRVIMRIQEIALTS-TTLSDSQKYNLHALVAALFTLVPLVSPITNIRD-YVNKTIAARQEHKTYHLL 424 (531)
Q Consensus 348 ~sL~-~~e~vvdl~rl~lalQ~~a~~~-~~l~~~~r~~~~a~~~~~l~l~s~~~~~p~~~q-~~~~vie~R~~~~~~~ll 424 (531)
-+.- ..-+=+-++-|+=|.=+.+.++ .+-+.. --|.-++-.+..+....+ +++ -.|. +.-
T Consensus 460 DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t---------~~y~~ii~~Ll~~tdr~dgnqs---NLR~-----AAY 522 (859)
T KOG1241|consen 460 DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT---------PFYEAIIGSLLKVTDRADGNQS---NLRS-----AAY 522 (859)
T ss_pred hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc---------hhHHHHHHHHHhhccccccchh---hHHH-----HHH
Confidence 2211 1122345555554444444444 222222 112222222211111111 111 1233 333
Q ss_pred hhHHHhhcCCCC--cc-chhhhhheecccCCccccc----CCCchhhHHHHHHHHHHHHhhccceeeeecccCCcccHHH
Q psy6027 425 PELREFAANLPD--YQ-KTEILVFIISKVLSTTYRE----SNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEP 497 (531)
Q Consensus 425 ~~~~~~~~~lp~--~~-k~~~~~f~~~k~~~~~~~~----~~~~~~~~~q~~l~~~ll~v~~~~~~~~~~~~~~~~fl~~ 497 (531)
..+++--.+-|| |. ..+...+++.|+-..-..+ +-.....-+|.+|.-+|=-|-.+..+.- -.--+..+.-
T Consensus 523 eALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~--~~~~d~iM~l 600 (859)
T KOG1241|consen 523 EALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDI--REVSDQIMGL 600 (859)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccc--hhHHHHHHHH
Confidence 556666666677 33 2445577777655432211 1233446688888888877777777611 1223457888
Q ss_pred HHhhhcc-----CChhHHHHHHHHHHhhhhhhhhhhh
Q psy6027 498 LLKILQS-----NDAEIRLLVNKEKARKKKKIESHVK 529 (531)
Q Consensus 498 ll~~~~~-----~d~~~r~~v~~~~~~~~~~~~~~~~ 529 (531)
||++.-. --.+.=+-|--....-.+..++|+.
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~ 637 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP 637 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH
Confidence 8887766 3344555565555666666666554
No 22
>KOG1991|consensus
Probab=48.66 E-value=2.1e+02 Score=34.82 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=45.0
Q ss_pred CCccchhhHHHHHHhhC-CchhhhhHHHHHHHHHH--------HHhhccCCceeeHHHHHHHHHHHcc
Q psy6027 28 GLVKTNMEKLTFYALSS-PEKLDRIGEYLYQRASR--------DISRRRNGYVVIAMEAMDQLLAACH 86 (531)
Q Consensus 28 ~Pn~s~lskL~yYA~s~-P~KL~KIg~yLekR~~~--------Dl~r~r~g~V~Vtl~i~~~Ll~~C~ 86 (531)
.|.-..+.-|+--+++| ++.+||+-+|+.+-+.+ +=.|+..|-..+.=.+.+.|..+.+
T Consensus 387 sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~ 454 (1010)
T KOG1991|consen 387 SPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP 454 (1010)
T ss_pred CCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc
Confidence 57778888899999999 99999999999998872 3456777876655555555555544
No 23
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=44.58 E-value=2e+02 Score=30.20 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=80.5
Q ss_pred hhhHHHHHHhhCCchhhhhHHHHH---HHHHHHHhhc--c------CCceeeHHHHHHHHHHHcccccccccHHHHHHHH
Q psy6027 33 NMEKLTFYALSSPEKLDRIGEYLY---QRASRDISRR--R------NGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIV 101 (531)
Q Consensus 33 ~lskL~yYA~s~P~KL~KIg~yLe---kR~~~Dl~r~--r------~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii 101 (531)
-+|=++|++...++-+...-.-|+ ...+-...-. . .+-+.-+++...-|+..|+...+.-+....+..+
T Consensus 154 aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l 233 (309)
T PF05004_consen 154 ALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPAL 233 (309)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 678889999999988883334443 2222111111 0 0124456677778888888755777778889999
Q ss_pred HHHHhcCCchhHHHhHHHHH----HHHhccCCchhhhhchHHHHHHHHhhhhhcc
Q psy6027 102 QKLLESLDPDLQILATNSFV----RFANIEEDTPSYHRRYDFFVSKFSALCHSNY 152 (531)
Q Consensus 102 ~~LL~s~~~~l~i~a~~tf~----~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 152 (531)
..+|++.+.++|+.|.++.. ......+| ....+.+.++..+.+|+...+
T Consensus 234 ~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~--~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 234 SELLDSDDVDVRIAAGEAIALLYELARDHEED--FLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhccccc--ccccCHHHHHHHHHHHHHhcc
Confidence 99999999999999887543 22223333 234688999999999998763
No 24
>KOG0889|consensus
Probab=44.40 E-value=3e+02 Score=38.06 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=97.2
Q ss_pred hhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCC
Q psy6027 132 SYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSP 211 (531)
Q Consensus 132 ~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~ 211 (531)
.-+.-|..++++|+++|+... -.-|..|..||..++..+.. .|-.+-.-.|+-++++-+-+..
T Consensus 1026 ~~lpi~~~l~~k~~~lCy~~~------wy~k~gG~~gI~~l~~~~~~------~~l~d~~~d~~~~l~fvl~d~~----- 1088 (3550)
T KOG0889|consen 1026 FKLPMFEYLLEKLCHLCYDST------WYAKDGGVNGIKCLIESMPS------LWLLDFQVDILKALFFVLKDTE----- 1088 (3550)
T ss_pred hccchHHHHHHHHHHHhccHh------HHHHcCCCceeeeehhhchH------HHHHHHHHHHhhhHHHhhcCCc-----
Confidence 467889999999999999742 23567999999998886531 1422212246777777664321
Q ss_pred CCCCCCccccccccCCCCChHHHHHHHHHHHHhhh---------hhhhHHHHHHHHhhhccCCCCCCC-chhHHHHHHHH
Q psy6027 212 ADPEPEAEETGKMMNLQEDPPALAETCLRELMSRA---------SFNHVKNVIQPVLIHFDHHALWNP-NIFATHVLRML 281 (531)
Q Consensus 212 ~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a---------~~t~vr~vl~~vl~~lD~~~~W~~-~~fA~~~f~~i 281 (531)
. +..+.+.+.+..||+.++.+. .....-.++.+++.++-|.+. + ..++..++..+
T Consensus 1089 ---------~----e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~--~VR~~~~~~L~~i 1153 (3550)
T KOG0889|consen 1089 ---------S----EVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS--DVREFSQKLLRLI 1153 (3550)
T ss_pred ---------c----ccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHH
Confidence 0 113346677888888886542 223345677777887777774 4 78888888888
Q ss_pred HHHhhccCcchhHHHHHHHhhhc----------CCCChHHHHHHHHHHHHHHHH
Q psy6027 282 MYSVQSQYSHLIVNCILAYLNDH----------HSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 282 ~~s~q~Q~~~~vls~Lv~HLd~~----------~~~~p~~r~~Iv~vls~lv~~ 325 (531)
+.... .=++.|++++-.- ....-+.+.|+++..+.++..
T Consensus 1154 ~~~s~-----~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l 1202 (3550)
T KOG0889|consen 1154 SELSG-----KSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSL 1202 (3550)
T ss_pred HHHcC-----CcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHc
Confidence 76441 1223333333221 122335688888887776554
No 25
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=41.96 E-value=1.1e+02 Score=28.53 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=68.9
Q ss_pred CCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCcee---eHHHHHHHHHHHcccc-cccccHHHHHHHHHH
Q psy6027 28 GLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVV---IAMEAMDQLLAACHSQ-TLNLFVESFLKIVQK 103 (531)
Q Consensus 28 ~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~---Vtl~i~~~Ll~~C~~~-~l~LFa~s~L~Ii~~ 103 (531)
.||-.-+--+|....+.|..=....+.|.||+. ++|.. -+|.+++.++.-|-.. +.-+-...|++-+-.
T Consensus 16 ~~dw~~ileicD~In~~~~~~k~a~rai~krl~-------~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQ-------SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 567777888999999998754445566666663 34433 5566668888888764 344445778877777
Q ss_pred HHhc------CCchhHHHhHHHHHHHHhccCCchhhhhchHHHH
Q psy6027 104 LLES------LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFV 141 (531)
Q Consensus 104 LL~s------~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V 141 (531)
++.. .+.+++.-....+..|+.--.+.|.|..-|+.+.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~Lk 132 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDMLK 132 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7742 3566666666777777643334446666555543
No 26
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=41.29 E-value=93 Score=27.49 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=45.3
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCc
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT 130 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~ 130 (531)
-++..+..|+..|++. ++-|++.+...++..|+.. +++..+++++..|...-++.
T Consensus 34 ~~l~si~~lI~~~~~~-i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 34 RALRSIEELIKLGGSH-ISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 5788899999999995 9999999888877777555 99999999999988765553
No 27
>KOG1062|consensus
Probab=39.37 E-value=6.6e+02 Score=30.29 Aligned_cols=249 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchH
Q psy6027 59 ASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYD 138 (531)
Q Consensus 59 ~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~ 138 (531)
+.+|+++...--|..+|+.+-.+... |- ++.+..=|..||..+++.++.=|+.+.++|.....|. -+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~--Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------~e 178 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSP--EM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------VE 178 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCH--HH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH------HH
Q ss_pred HHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc--CCCCCCCCCC---
Q psy6027 139 FFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ--ESGHYQSPAD--- 213 (531)
Q Consensus 139 ~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~--~~~~~~~~~~--- 213 (531)
-|+..|.++-++.... +=.+|+.=+..++.-. .|++. +|.+++|.+..-+. .......+.+
T Consensus 179 ~f~~~~~~lL~ek~hG------VL~~~l~l~~e~c~~~-~~~l~-------~fr~l~~~lV~iLk~l~~~~yspeydv~g 244 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHG------VLIAGLHLITELCKIS-PDALS-------YFRDLVPSLVKILKQLTNSGYSPEYDVHG 244 (866)
T ss_pred HhhHHHHHHHhhcCCc------eeeeHHHHHHHHHhcC-HHHHH-------HHHHHHHHHHHHHHHHhcCCCCCccCccC
Q ss_pred -CCCC---------ccccccccCCCCChHHHHHHHHHHHHhhh-hhhhHHHHH--HHHhhhccCCCCCCCchhHHHHHHH
Q psy6027 214 -PEPE---------AEETGKMMNLQEDPPALAETCLRELMSRA-SFNHVKNVI--QPVLIHFDHHALWNPNIFATHVLRM 280 (531)
Q Consensus 214 -~~p~---------~~~~d~~~~~~e~p~~lA~~CLr~l~~~a-~~t~vr~vl--~~vl~~lD~~~~W~~~~fA~~~f~~ 280 (531)
+.|+ ..-..- ..+.+..-.--|-+++.++ +..|++..+ +.|..-+|-..--.-...|+.|+.-
T Consensus 245 i~dPFLQi~iLrlLriLGq~----d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 245 ISDPFLQIRILRLLRILGQN----DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGK 320 (866)
T ss_pred CCchHHHHHHHHHHHHhcCC----CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q ss_pred HHHHhhccCcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHH
Q psy6027 281 LMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTL 343 (531)
Q Consensus 281 i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LL 343 (531)
....-.---+|+-|.+|++-.-..+ ..+|+|-..++- ++.-.+. ++....+|..+.+.
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~---~avqrHr~tIle-CL~DpD~-SIkrralELs~~lv 378 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDP---TAVQRHRSTILE-CLKDPDV-SIKRRALELSYALV 378 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCc---HHHHHHHHHHHH-HhcCCcH-HHHHHHHHHHHHHh
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.96 E-value=53 Score=33.65 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 97 FLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 97 ~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
.+.+|..+|+..++..++-|..+...++...+.. .. -+.+|++-|+......-| .....+||++|..+--
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~-~~---Ik~~i~~Vc~~~~s~~ln----s~~Q~agLrlL~nLtv 124 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQ-EQ---IKMYIPQVCEETVSSPLN----SEVQLAGLRLLTNLTV 124 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-HH---HHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHccCC
Confidence 4677889999999999988888888776554333 33 344576666655543334 2355799999999843
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=35.88 E-value=58 Score=27.23 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcccccccccHH-HHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhcc
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVE-SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 152 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~-s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 152 (531)
++.++..+....++. ...|.. .++..+-.+|..++++++..++.++..++.......... .-.++++.+.+.....
T Consensus 27 a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~g~l~~l~~~l~~~- 103 (120)
T cd00020 27 AAWALSNLSAGNNDN-IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV-LEAGGVPKLVNLLDSS- 103 (120)
T ss_pred HHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH-HHCCChHHHHHHHhcC-
Confidence 344444444332222 333444 677777777878888888888888888875443221111 1234677777766543
Q ss_pred CChhHHHHHHHHHHhhhhhh
Q psy6027 153 ADVTKRNKLRLAGIRGIQGV 172 (531)
Q Consensus 153 ~d~e~~~r~R~aGL~aL~~v 172 (531)
+ .++|..++.+|..+
T Consensus 104 -~----~~~~~~a~~~l~~l 118 (120)
T cd00020 104 -N----EDIQKNATGALSNL 118 (120)
T ss_pred -C----HHHHHHHHHHHHHh
Confidence 2 34666666666544
No 30
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.50 E-value=3.5e+02 Score=30.34 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.9
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhh
Q psy6027 292 LIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAA 327 (531)
Q Consensus 292 ~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~a~ 327 (531)
-++..|++.|+ +..++.++....+++..++.+++
T Consensus 62 ~LI~~Li~~L~--p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 62 NLIPRLIDLLS--PSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred CHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhh
Confidence 46777777776 55678899999999998888864
No 31
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=31.15 E-value=1.2e+02 Score=26.52 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc
Q psy6027 27 EGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ 88 (531)
Q Consensus 27 ~~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~ 88 (531)
.+|+..-+-.+|....++++-...+.+.|.+|+.+. .---+.=+|..++.|+..|.+.
T Consensus 14 ~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~----~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 14 MGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK----NPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHccHH
Confidence 478889999999999999999999999999999642 2222446777789999999875
No 32
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.79 E-value=2.2e+02 Score=26.11 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=61.6
Q ss_pred CccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc-cccccHHHHHHHHHHHHhc
Q psy6027 29 LVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLES 107 (531)
Q Consensus 29 Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~-~l~LFa~s~L~Ii~~LL~s 107 (531)
|+-+-+-.+|..+.+++.--.-+.+-|.||+.+ ....-+.-+|.+++.++..|-.. +.-+-...|++-+..++.+
T Consensus 21 ~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~----~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 21 PDWSLILEICDLINSSPDGAKEAARALRKRLKH----GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp --HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence 355566678999999977777777777777654 22222346778899999999664 2333346688888888875
Q ss_pred -CCch---hHHHhHHHHHHHHhc
Q psy6027 108 -LDPD---LQILATNSFVRFANI 126 (531)
Q Consensus 108 -~~~~---l~i~a~~tf~~F~~~ 126 (531)
.... ++.-....+..|..-
T Consensus 97 ~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 97 KKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp TTTHHHSHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHH
Confidence 3333 566667777777643
No 33
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=27.94 E-value=6.5e+02 Score=25.53 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=35.7
Q ss_pred CCCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcc
Q psy6027 27 EGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACH 86 (531)
Q Consensus 27 ~~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~ 86 (531)
+...++-+.++..|+ +|+-..+|-..|...+ .++...++|+=. +.++++.|.
T Consensus 18 ~~~gsr~lQ~~l~~~--~~~~~~~i~~~l~~~~-~~l~~~~~g~~v-----vq~~l~~~~ 69 (322)
T cd07920 18 DQHGSRFLQQKLEEA--TPEEKELIFDEILPHV-VELMVDPFGNYV-----IQKLFEHGT 69 (322)
T ss_pred CchhhHHHHHHhccC--CHHHHHHHHHHHHHhH-HHHhcCccccHH-----HHHHHHhCC
Confidence 445567788888887 6778888888877765 677778888733 345555553
No 34
>PF02172 KIX: KIX domain; InterPro: IPR003101 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner []. This provides a model for activator:coactivator interactions. The KIX domain of CBP also binds to transactivation domains of other nuclear factors including Myb and Jun.; GO: 0003712 transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2KWF_A 1KDX_A 2LQH_A 2LQI_A 1SB0_A 2AGH_B.
Probab=27.85 E-value=46 Score=28.54 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=22.5
Q ss_pred hhhhcccCcCCCCCCCccchhhHHHHHHh
Q psy6027 14 KRLVDNIFPLSPEEGLVKTNMEKLTFYAL 42 (531)
Q Consensus 14 kkLV~~~YP~~p~~~Pn~s~lskL~yYA~ 42 (531)
.|||..|||.......++..|..|+.||-
T Consensus 20 ~KLv~aI~P~pdp~a~~d~rm~~l~~yar 48 (81)
T PF02172_consen 20 HKLVQAIFPTPDPNAMNDPRMKNLIEYAR 48 (81)
T ss_dssp HHHHHHHS-SSSCCCCCSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHHHH
Confidence 57999999985445557888999999984
No 35
>KOG0212|consensus
Probab=27.34 E-value=1e+03 Score=27.70 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=41.9
Q ss_pred ChHHHHHH---HHHHHHhhhhh---hhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc---CcchhHHHHHHH
Q psy6027 230 DPPALAET---CLRELMSRASF---NHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ---YSHLIVNCILAY 300 (531)
Q Consensus 230 ~p~~lA~~---CLr~l~~~a~~---t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q---~~~~vls~Lv~H 300 (531)
+..+.|.. -|..+++-+.. --.|.+++-+.+|+-+..- ..+-=|..|...+....++| +-+-+..+|++.
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~-~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDRE-ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 44444443 34445443322 2367888888888876552 12322333333344455676 666788888888
Q ss_pred hhhcC
Q psy6027 301 LNDHH 305 (531)
Q Consensus 301 Ld~~~ 305 (531)
|...+
T Consensus 386 Lsd~s 390 (675)
T KOG0212|consen 386 LSDRS 390 (675)
T ss_pred hcCch
Confidence 86654
No 36
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=26.29 E-value=8.5e+02 Score=26.32 Aligned_cols=208 Identities=17% Similarity=0.161 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhc---cCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccc-ccccchhHH-HHHhhccCCCCCCCCCC
Q psy6027 139 FFVSKFSALCHSN---YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWE-STHMEKIIP-SLLFNMQESGHYQSPAD 213 (531)
Q Consensus 139 ~~V~~f~~la~~~---~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e-~~~~d~IVp-~iL~Nl~~~~~~~~~~~ 213 (531)
.|++.|.+-.++- ..+......+=..+|+=|+.++..-. ..+.|. ..|++.|+- +|+-||.-+++....-.
T Consensus 133 ~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~----~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfE 208 (370)
T PF08506_consen 133 PFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPH----HKNLFENKPHLQQIIEKVIFPNLCLREEDEELFE 208 (370)
T ss_dssp HHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH----HHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh----HHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHc
Confidence 4555555444431 22234455566678888887766321 122342 457887777 44558863321000000
Q ss_pred CCCC-ccccccccCCCCChHHHHHHHHHHHHhh---hhhhhHHHHHHHHhhhc--cCCCCCCCchhHHHHHHHHHHHhhc
Q psy6027 214 PEPE-AEETGKMMNLQEDPPALAETCLRELMSR---ASFNHVKNVIQPVLIHF--DHHALWNPNIFATHVLRMLMYSVQS 287 (531)
Q Consensus 214 ~~p~-~~~~d~~~~~~e~p~~lA~~CLr~l~~~---a~~t~vr~vl~~vl~~l--D~~~~W~~~~fA~~~f~~i~~s~q~ 287 (531)
..|. =+-.|..+.+..+|..-|..+||.+..+ .....+...+..++.-. +..+.|..+.-|+..+..+..-..+
T Consensus 209 ddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 209 DDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred cCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 0110 0000001122468899999999999654 22333555566555522 2345566666677777766543221
Q ss_pred c-------Ccch-hHHHHHHHhhh----cCCCChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhhccchh
Q psy6027 288 Q-------YSHL-IVNCILAYLND----HHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDT 355 (531)
Q Consensus 288 Q-------~~~~-vls~Lv~HLd~----~~~~~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL~~~e~ 355 (531)
+ +..+ |.+-+..|.-. .....|-+|+..+..+..-..+ - . -+.+..++..+-..|+++..
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~----l-~---~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ----L-P---KEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG----S-----HHHHHHHHHHHHHHTTSS-H
T ss_pred ccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh----C-C---HHHHHHHHHHHHHHhCCCCc
Confidence 1 1122 33333333321 2356677888888876643221 1 1 14555566666666666676
Q ss_pred HHH
Q psy6027 356 VVD 358 (531)
Q Consensus 356 vvd 358 (531)
||-
T Consensus 361 vv~ 363 (370)
T PF08506_consen 361 VVH 363 (370)
T ss_dssp HHH
T ss_pred chh
Confidence 663
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=26.15 E-value=1.3e+02 Score=20.32 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCchhHHHhHHHHHHHHhc
Q psy6027 98 LKIVQKLLESLDPDLQILATNSFVRFANI 126 (531)
Q Consensus 98 L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~ 126 (531)
+..+-.+++..+++.|..|+.+|..++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45566777888999999999999888753
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.30 E-value=1.4e+02 Score=33.42 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhh----hhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSY----HRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ 170 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y----~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~ 170 (531)
+.|+..+...++++|.+++..|.+||..++...+.-... -...+.++..+...+.....| +|..+|.||.
T Consensus 289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~------lk~r~l~al~ 362 (503)
T PF10508_consen 289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE------LKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH------HHHHHHHHHH
Confidence 566666666778899999999999999888554322112 123455777777777664333 8999999999
Q ss_pred hhhhc
Q psy6027 171 GVIRK 175 (531)
Q Consensus 171 ~vV~k 175 (531)
.+...
T Consensus 363 ~il~~ 367 (503)
T PF10508_consen 363 SILTS 367 (503)
T ss_pred HHHhc
Confidence 98763
No 39
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=25.07 E-value=3.1e+02 Score=28.23 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccccccc--ccHHHHH-HHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 74 AMEAMDQLLAACHSQTLN--LFVESFL-KIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~--LFa~s~L-~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
.|.|...+++.++.. +. ....+++ ++|.--+++.++++|..|..++.-||-+..+. -. .+++.|......
T Consensus 3 cL~i~~~lL~~~~~~-~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a~---~~l~l~~~~~~~ 75 (298)
T PF12719_consen 3 CLSITQSLLENVSSS-LSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---AK---EHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHHHhcccc-CCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---HH---HHHHHHHHHHHh
Confidence 467888999998853 33 2222333 33444456789999999999999999776532 22 244445555533
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhccc
Q psy6027 151 NYADVTKRNKLRLAGIRGIQGVIRKTV 177 (531)
Q Consensus 151 ~~~d~e~~~r~R~aGL~aL~~vV~k~~ 177 (531)
++ ..+|..+|+||--++-.-+
T Consensus 76 --~~----~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 76 --DD----EEVKITALKALFDLLLTHG 96 (298)
T ss_pred --CC----HHHHHHHHHHHHHHHHHcC
Confidence 23 3588889998877666433
No 40
>PF03586 Herpes_UL36: Herpesvirus UL36 tegument protein; InterPro: IPR005210 The UL36 open reading frame (ORF) encodes the largest Human herpesvirus 1 (HHV-1) protein, a 270 kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells []. The region which defines these sequences only covers a small central part of this large protein.; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity
Probab=23.89 E-value=2.3e+02 Score=29.31 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHhhcccccCcchhhHHHH
Q psy6027 352 SDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVN 409 (531)
Q Consensus 352 ~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~~~~~l~l~s~~~~~p~~~q~~~ 409 (531)
+=|.+..++|++.++=..|-++....+++ ....-+...|+.||+|.+||+
T Consensus 112 ~ve~L~~L~rI~~~iL~~A~a~~G~idy~--------~~V~~l~~dL~~vP~L~kYVd 161 (253)
T PF03586_consen 112 DVEPLLRLMRIAEGILEHAAAGGGNIDYY--------DAVGRLSGDLMQVPELAKYVD 161 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCCCCcHH--------HHHHHHHHHHHhChhHHHHHH
Confidence 34566788888888877786666556666 455678899999999999998
No 41
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.73 E-value=1.1e+02 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCcccHHHHHhh-hccCChhHHHHHHHH----HHhhhhhhhhh
Q psy6027 490 FPLAFLEPLLKI-LQSNDAEIRLLVNKE----KARKKKKIESH 527 (531)
Q Consensus 490 ~~~~fl~~ll~~-~~~~d~~~r~~v~~~----~~~~~~~~~~~ 527 (531)
|-..||.|+..+ .-..+.++|-.+.+. ++++..+|.|-
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SG 56 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSG 56 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 446789999986 677899999987655 66666676653
No 42
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=22.35 E-value=4.1e+02 Score=25.08 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=64.7
Q ss_pred HHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhc-CCchhHHHhHHHHHHHHhccCCchhhhhc
Q psy6027 58 RASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES-LDPDLQILATNSFVRFANIEEDTPSYHRR 136 (531)
Q Consensus 58 R~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s-~~~~l~i~a~~tf~~F~~~~~D~~~y~~~ 136 (531)
|+.+=++.+...+--.++.++..+++.|.-+.+---....++.+-.+|++ ..+.....++.++.+....-.+-|++.|+
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 33444444444444588999999999994433433456666777777776 44455556677777754433333455543
Q ss_pred -----hHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 137 -----YDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 137 -----y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
.-.|+..+.++... .......|.+|+..+..
T Consensus 109 i~tp~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD--------SSCPETALDALATLLPH 144 (165)
T ss_pred HhhccHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHH
Confidence 34455555554443 23555777788777763
No 43
>KOG2274|consensus
Probab=22.20 E-value=1.5e+03 Score=27.82 Aligned_cols=119 Identities=17% Similarity=0.282 Sum_probs=61.6
Q ss_pred CCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccc
Q psy6027 108 LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWE 187 (531)
Q Consensus 108 ~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e 187 (531)
..+-.++.++.+|.-||....= ..-...+++-..+++....++ .=..=..+|+.||... +-.+
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~vl----~~~~p~ild~L~qlas~~s~e------vl~llmE~Ls~vv~~d---pef~---- 565 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVKVL----LSLQPMILDGLLQLASKSSDE------VLVLLMEALSSVVKLD---PEFA---- 565 (1005)
T ss_pred CCCchhHHHHHHHHhccCceec----cccchHHHHHHHHHcccccHH------HHHHHHHHHHHHhccC---hhhh----
Confidence 4556677777888888843322 222334566666666653332 2344567888888742 2111
Q ss_pred ccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCCh--HHHHHHHHHHHHhhh-hhhhHH-HHHHHHhhhcc
Q psy6027 188 STHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDP--PALAETCLRELMSRA-SFNHVK-NVIQPVLIHFD 263 (531)
Q Consensus 188 ~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p--~~lA~~CLr~l~~~a-~~t~vr-~vl~~vl~~lD 263 (531)
..+..+|-+...|+--.- .+|| ...++.|++++...+ +.+.+- +.+.+++.-++
T Consensus 566 -as~~skI~P~~i~lF~k~---------------------s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~ 623 (1005)
T KOG2274|consen 566 -ASMESKICPLTINLFLKY---------------------SEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQ 623 (1005)
T ss_pred -hhhhcchhHHHHHHHHHh---------------------cCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHc
Confidence 123334444666663110 2234 455778888887654 344433 33333444444
Q ss_pred CC
Q psy6027 264 HH 265 (531)
Q Consensus 264 ~~ 265 (531)
..
T Consensus 624 ~~ 625 (1005)
T KOG2274|consen 624 LN 625 (1005)
T ss_pred Cc
Confidence 33
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=22.10 E-value=3.3e+02 Score=30.27 Aligned_cols=123 Identities=14% Similarity=0.186 Sum_probs=69.1
Q ss_pred cCCceeeHHHHHHHHHHHcccccccccHHHH------HHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHH
Q psy6027 67 RNGYVVIAMEAMDQLLAACHSQTLNLFVESF------LKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFF 140 (531)
Q Consensus 67 r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~------L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~ 140 (531)
+..-++-.+..++.|+..++.- ..+|.... ....-.+|..+|.-+...++..++.+...+... ......+.+
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~-~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~ 144 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTR-VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAK-MEGSDLDYY 144 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHH-HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccc-cchhHHHHH
Confidence 3445667788888999998873 77777542 222223666666666777776666665332221 111111223
Q ss_pred HHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy6027 141 VSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 203 (531)
Q Consensus 141 V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~ 203 (531)
.+.+++.-... ...+....|+++|+.+++ .++.....|+.. .|+.+..++.
T Consensus 145 ~~~l~~~l~~~-----~~~~~~~~~v~~L~~LL~---~~~~R~~f~~~~----~v~~L~~~L~ 195 (429)
T cd00256 145 FNWLKEQLNNI-----TNNDYVQTAARCLQMLLR---VDEYRFAFVLAD----GVPTLVKLLS 195 (429)
T ss_pred HHHHHHHhhcc-----CCcchHHHHHHHHHHHhC---CchHHHHHHHcc----CHHHHHHHHh
Confidence 33333332221 124577889999999888 466666667543 3555555443
No 45
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=21.70 E-value=1.8e+02 Score=29.17 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=45.7
Q ss_pred HHHhhhccCCCCCCC--chhHHHHHHHHHHH--hhccCcchhHHHHHHHhhhcCCCChHHHHHH--HHHHHHHHHHhhhc
Q psy6027 256 QPVLIHFDHHALWNP--NIFATHVLRMLMYS--VQSQYSHLIVNCILAYLNDHHSSPSLIRAKI--ADALSKIISIAASE 329 (531)
Q Consensus 256 ~~vl~~lD~~~~W~~--~~fA~~~f~~i~~s--~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~I--v~vls~lv~~a~~~ 329 (531)
+.++.-++.+++|.. ..++...-..-.+. +.++++|-++-..+-.|.+. ++..|..| .+-+. -+..
T Consensus 100 ~~~~~iie~~~LW~~~~~~l~~~~~~l~~rd~~l~g~~sY~~IR~~L~eL~~~---~e~~R~~I~v~~YIq-----~RT~ 171 (207)
T PRK11832 100 KQTITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDW---NEELRSRIGVMNYIH-----QRTR 171 (207)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CHHHHhhccHHHHHH-----Hhcc
Confidence 445667889999966 22222211111111 23679999988776666543 46666654 33322 1334
Q ss_pred cCCccHHHHHHHHHHH
Q psy6027 330 SIGPTVLEVLYTTLTL 345 (531)
Q Consensus 330 s~g~sv~eal~~LLrh 345 (531)
.+...+++++++|-+.
T Consensus 172 LSRS~ImkILs~LKkG 187 (207)
T PRK11832 172 ISRSVVAEVLAALRKG 187 (207)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 4455677887776543
No 46
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=21.53 E-value=4.1e+02 Score=23.23 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=52.6
Q ss_pred CccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHH
Q psy6027 29 LVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLL 105 (531)
Q Consensus 29 Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL 105 (531)
+..+.|..|+-+|..|..-=+.|...+++.+.+.-..++. -.|-.++.++..|+....+.|...+...+...+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL----~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~ 83 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKL----PLLYLLDSIVQNSKRKYGSEFGDELGPVFQDAL 83 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccee----hhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 5678899999999999888889999998877664433333 466688999999987534556665555554444
No 47
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.81 E-value=2.5e+02 Score=25.80 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=35.6
Q ss_pred CccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCce-eeHHHHHHHHHHHccc
Q psy6027 29 LVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYV-VIAMEAMDQLLAACHS 87 (531)
Q Consensus 29 Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V-~Vtl~i~~~Ll~~C~~ 87 (531)
|-.-.+.-+....-++|....+|..||-+|+.+ +..+| .=+|.|++.|+..-++
T Consensus 17 ~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~-----~~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 17 TPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKR-----SSPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred CchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC-----CCCcchHHHHHHHHHHHhhCCH
Confidence 333444444444556889999999999999985 22455 3467777777666443
No 48
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.67 E-value=5.4e+02 Score=23.87 Aligned_cols=95 Identities=8% Similarity=0.077 Sum_probs=61.2
Q ss_pred CCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc-cccccHHHHHHHHHHHHh
Q psy6027 28 GLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLE 106 (531)
Q Consensus 28 ~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~-~l~LFa~s~L~Ii~~LL~ 106 (531)
.|+-.-+--+|....+++..-.-..+.|.||+.. ++..-+.-+|.+++.++..|-.. +.-+-...|++-+..++.
T Consensus 19 ~~dw~~ileicD~In~~~~~~k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~ 94 (142)
T cd03569 19 EPDLASILEICDMIRSKDVQPKYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIK 94 (142)
T ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHc
Confidence 4555556669999988887644555566665543 22222335666678888888653 344556778888878776
Q ss_pred c-CCchhHHHhHHHHHHHHhc
Q psy6027 107 S-LDPDLQILATNSFVRFANI 126 (531)
Q Consensus 107 s-~~~~l~i~a~~tf~~F~~~ 126 (531)
. .++.++.-....+..|+..
T Consensus 95 ~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 95 TTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 4 5667776667777777643
No 49
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.51 E-value=5.4e+02 Score=26.51 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHhhhccCCCCCCC-chhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 247 SFNHVKNVIQPVLIHFDHHALWNP-NIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 247 ~~t~vr~vl~~vl~~lD~~~~W~~-~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
...++.+|+...-+ +.- .+ .+|..++.+.+-...=+.+..-+++.|++-|+++. +-+|..+.+++..+...
T Consensus 147 ~~~~La~il~~ya~----~~f-r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~---~w~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 147 GLPNLARILSSYAK----GRF-RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGP---PWLRRKTLQILKVLLPH 218 (262)
T ss_pred CCccHHHHHHHHHh----cCC-CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhcc
Confidence 45667777765433 222 23 67777777777654435577888899999998865 78999999999877666
Q ss_pred hhhccCCccHHHHHHHHHHHHHHhhc
Q psy6027 326 AASESIGPTVLEVLYTTLTLLCIELI 351 (531)
Q Consensus 326 a~~~s~g~sv~eal~~LLrhLr~sL~ 351 (531)
. ....+...+.++-++|+|.-.+.
T Consensus 219 ~--d~~~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 219 V--DMRSPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred c--cCCCCcchHHHHHHHHHhCCccH
Confidence 4 23344566888899999877753
No 50
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.40 E-value=5.5e+02 Score=22.27 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=53.2
Q ss_pred ccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCC
Q psy6027 30 VKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLD 109 (531)
Q Consensus 30 n~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~ 109 (531)
..+.|..|+-+|..|+..-+.|..-+++++.+- ....-.-.|-.++.++..|++..-..|...+.+++.......+
T Consensus 17 S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~----~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~ 92 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC----PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVD 92 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCC
Confidence 567788899999999866666666666665443 3333345667888888889876445555555666655555555
Q ss_pred chhHH
Q psy6027 110 PDLQI 114 (531)
Q Consensus 110 ~~l~i 114 (531)
++.+.
T Consensus 93 ~~~r~ 97 (114)
T cd03562 93 EKTRK 97 (114)
T ss_pred HHHHH
Confidence 55443
No 51
>KOG2023|consensus
Probab=20.17 E-value=3.3e+02 Score=32.27 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=54.3
Q ss_pred cCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcc
Q psy6027 107 SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIW 186 (531)
Q Consensus 107 s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~ 186 (531)
...+.+|-.|..+.-.|.-++.+ ++..+.|.|+.....+|. .+++++|..+-. ++--|--+ + -|-+
T Consensus 185 h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalan--D~~~eVRk~vC~-alv~Llev-r---~dkl----- 250 (885)
T KOG2023|consen 185 HPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALAN--DEDPEVRKNVCR-ALVFLLEV-R---PDKL----- 250 (885)
T ss_pred CCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHcc--CCCHHHHHHHHH-HHHHHHHh-c---HHhc-----
Confidence 46777777776666666666654 588889999999999993 445666665532 22211111 1 1221
Q ss_pred cccccchhHHHHHhhccCCC
Q psy6027 187 ESTHMEKIIPSLLFNMQESG 206 (531)
Q Consensus 187 e~~~~d~IVp~iL~Nl~~~~ 206 (531)
-.|++.||.-+|.-.++.+
T Consensus 251 -~phl~~IveyML~~tqd~d 269 (885)
T KOG2023|consen 251 -VPHLDNIVEYMLQRTQDVD 269 (885)
T ss_pred -ccchHHHHHHHHHHccCcc
Confidence 3488888888888777654
Done!