Query psy6027
Match_columns 531
No_of_seqs 189 out of 247
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:39:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 96.9 0.066 2.3E-06 60.0 21.7 237 73-348 234-494 (852)
2 4fdd_A Transportin-1; heat rep 96.7 0.027 9.3E-07 63.1 16.6 206 95-325 214-430 (852)
3 1ibr_B P95, importin beta-1 su 96.6 0.053 1.8E-06 54.8 16.3 205 95-326 216-439 (462)
4 2qk2_A LP04448P; mini spindles 96.4 0.049 1.7E-06 51.6 13.9 183 104-326 23-207 (242)
5 2qk2_A LP04448P; mini spindles 96.1 0.051 1.7E-06 51.5 11.9 186 50-286 15-208 (242)
6 2bpt_A Importin beta-1 subunit 95.9 2.5 8.4E-05 46.4 25.9 275 34-351 435-733 (861)
7 2bpt_A Importin beta-1 subunit 95.6 1.6 5.4E-05 47.9 22.9 258 73-366 575-854 (861)
8 1qgr_A Protein (importin beta 95.2 0.33 1.1E-05 53.5 15.9 204 96-326 217-439 (876)
9 1ibr_B P95, importin beta-1 su 95.1 0.87 3E-05 45.8 17.6 210 73-323 149-394 (462)
10 2vgl_B AP-2 complex subunit be 94.6 3 0.0001 45.0 21.4 92 75-175 220-312 (591)
11 1qgr_A Protein (importin beta 93.4 2.7 9.1E-05 46.2 18.2 225 74-326 628-873 (876)
12 1u6g_C TIP120 protein, CAND1; 92.8 1.5 5.3E-05 51.0 15.9 218 74-325 454-680 (1230)
13 1b3u_A Protein (protein phosph 92.3 0.83 2.8E-05 47.6 11.6 202 74-324 107-310 (588)
14 1w63_A Adapter-related protein 91.7 11 0.00038 40.9 20.1 232 36-325 257-491 (618)
15 1u6g_C TIP120 protein, CAND1; 91.4 5.3 0.00018 46.5 18.2 211 74-325 68-285 (1230)
16 1b3u_A Protein (protein phosph 91.1 2.6 8.9E-05 43.8 13.9 191 94-325 279-471 (588)
17 2qk1_A Protein STU2; STU2P, XM 91.0 1.7 5.9E-05 42.0 11.6 184 105-325 25-221 (249)
18 2qk1_A Protein STU2; STU2P, XM 89.9 2.1 7.3E-05 41.3 11.1 186 54-285 20-222 (249)
19 4hxt_A De novo protein OR329; 88.4 2.7 9.2E-05 38.4 10.2 191 95-324 43-241 (252)
20 3tpo_A Importin subunit alpha- 87.6 3.9 0.00013 43.2 12.2 214 73-322 95-320 (529)
21 4db8_A Armadillo-repeat protei 86.3 2.6 8.9E-05 39.0 8.9 208 73-321 31-248 (252)
22 4hxt_A De novo protein OR329; 85.6 3.3 0.00011 37.8 9.1 187 98-323 4-198 (252)
23 2jdq_A Importin alpha-1 subuni 84.9 5.5 0.00019 39.9 11.1 211 74-322 40-261 (450)
24 4db6_A Armadillo repeat protei 84.2 5.8 0.0002 35.5 10.0 187 96-322 12-207 (210)
25 1wa5_C Importin alpha RE-expor 82.8 36 0.0012 38.6 17.9 243 112-370 262-524 (960)
26 4b8j_A Importin subunit alpha- 80.3 8.3 0.00029 40.1 10.7 191 98-322 76-271 (528)
27 2jdq_A Importin alpha-1 subuni 79.0 3.9 0.00013 41.0 7.4 189 95-323 106-304 (450)
28 1wa5_B Importin alpha subunit; 78.3 9.4 0.00032 39.9 10.4 190 96-324 215-412 (530)
29 4b8j_A Importin subunit alpha- 76.4 4.6 0.00016 42.1 7.2 210 74-323 94-314 (528)
30 4db8_A Armadillo-repeat protei 74.3 16 0.00055 33.5 9.7 186 99-323 15-208 (252)
31 1w63_A Adapter-related protein 69.5 1.3E+02 0.0044 32.5 28.3 233 230-518 328-573 (618)
32 2vgl_A Adaptor protein complex 67.6 84 0.0029 34.2 15.0 108 72-204 308-415 (621)
33 1wa5_B Importin alpha subunit; 66.6 12 0.0004 39.2 7.7 189 95-322 172-368 (530)
34 2vgl_B AP-2 complex subunit be 65.4 34 0.0012 36.7 11.2 201 68-322 250-455 (591)
35 1jdh_A Beta-catenin; beta-cate 64.4 1.3E+02 0.0043 30.6 15.4 191 94-322 99-293 (529)
36 4ffb_C Protein STU2; tubulin f 59.1 18 0.00063 34.6 7.0 183 55-285 14-214 (278)
37 3ul1_B Importin subunit alpha- 53.7 59 0.002 34.0 10.3 214 73-322 76-301 (510)
38 1sz9_A PCF11 protein; RNA poly 53.1 24 0.00084 31.6 6.2 94 29-126 22-115 (144)
39 2vgl_A Adaptor protein complex 52.2 2.6E+02 0.0088 30.3 24.4 230 230-518 344-585 (621)
40 4flb_A Regulation of nuclear P 47.6 44 0.0015 28.8 6.9 80 30-113 20-100 (132)
41 2z6g_A B-catenin; FULL-length, 46.6 3.4E+02 0.012 30.1 17.6 189 96-322 234-426 (780)
42 3tpo_A Importin subunit alpha- 44.5 89 0.003 32.7 10.0 193 95-326 250-451 (529)
43 2x1g_F Cadmus; transport prote 40.5 1.1E+02 0.0037 34.5 10.4 109 33-150 529-643 (971)
44 3ul1_B Importin subunit alpha- 35.6 72 0.0025 33.3 7.5 191 95-325 231-431 (510)
45 4db6_A Armadillo repeat protei 33.3 35 0.0012 30.3 4.0 72 95-173 137-208 (210)
46 1xqr_A HSPBP1 protein; armadil 33.1 1E+02 0.0034 30.4 7.7 74 95-175 166-239 (296)
47 3d9j_A RNA-binding protein 16; 32.9 1.3E+02 0.0043 26.8 7.6 71 30-104 22-95 (145)
48 1kdx_A CBP; complex (transcrip 28.8 22 0.00075 29.3 1.6 30 14-43 20-49 (81)
49 2iw3_A Elongation factor 3A; a 28.4 1E+02 0.0035 36.0 7.7 88 230-318 110-198 (986)
50 2z6h_A Catenin beta-1, beta-ca 27.4 5.8E+02 0.02 27.0 18.9 190 94-323 96-291 (644)
51 1wa5_C Importin alpha RE-expor 27.1 7E+02 0.024 27.9 17.9 60 137-203 592-651 (960)
52 2z6h_A Catenin beta-1, beta-ca 25.0 4.6E+02 0.016 27.8 11.7 156 91-282 9-168 (644)
53 3g2s_A C-terminal fragment of 22.0 2.4E+02 0.0082 25.2 7.4 107 28-141 26-142 (149)
54 2x19_B Importin-13; nuclear tr 21.0 3.5E+02 0.012 30.1 10.1 130 35-175 514-650 (963)
55 3nmw_A APC variant protein; AR 20.5 4.4E+02 0.015 26.4 9.9 179 109-322 97-290 (354)
56 3zyq_A Hepatocyte growth facto 20.1 2.7E+02 0.0093 26.3 7.8 126 13-150 9-139 (226)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.91 E-value=0.066 Score=59.99 Aligned_cols=237 Identities=11% Similarity=0.063 Sum_probs=132.9
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhh-hchHHHHHHHHhhhh--
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYH-RRYDFFVSKFSALCH-- 149 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~-~~y~~~V~~f~~la~-- 149 (531)
-+++++..|...+.+. +.-+...++..+-.++...+++++..+++.+..++...... .+. ..+..+++.+.+...
T Consensus 234 ~a~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~ 311 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYS 311 (852)
T ss_dssp HHHHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCc
Confidence 3566667777776663 44455666666666777778888999988888877542111 222 234456666655542
Q ss_pred --------hc-cCChh-----HHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCC
Q psy6027 150 --------SN-YADVT-----KRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPE 215 (531)
Q Consensus 150 --------~~-~~d~e-----~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~ 215 (531)
.. .+|++ ..-+.|.++.++|..++...+ ..-+..++|.+...+++.+
T Consensus 312 e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~----------~~~~~~l~~~l~~~l~~~~--------- 372 (852)
T 4fdd_A 312 DIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR----------DELLPHILPLLKELLFHHE--------- 372 (852)
T ss_dssp HHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHTCSS---------
T ss_pred HhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHhcCCC---------
Confidence 11 11111 223468889999888776432 1123356676666663210
Q ss_pred CCccccccccCCCCChHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----
Q psy6027 216 PEAEETGKMMNLQEDPPALAETCLRELMSRAS---FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ---- 288 (531)
Q Consensus 216 p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~---~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q---- 288 (531)
-....-|-.+|..+..... ...+..++..++..+.+.+ |.-..-|..++..+..+...+
T Consensus 373 -------------~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~ 438 (852)
T 4fdd_A 373 -------------WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT 438 (852)
T ss_dssp -------------HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred -------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHHH
Confidence 0123345555666644321 1346677777888775543 322455666666666666433
Q ss_pred CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHH
Q psy6027 289 YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCI 348 (531)
Q Consensus 289 ~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~ 348 (531)
+-.-++..+++.|. ..++.+|......+..++..... ...+..-+++..++..+..
T Consensus 439 ~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 439 YLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSK 494 (852)
T ss_dssp THHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHHHHHHHH
Confidence 22234455555543 34689999999988887765432 2344444555556555543
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.72 E-value=0.027 Score=63.12 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhh-chHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHR-RYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~-~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
..++..+-.++...+++.+..++.+|..++.... .+.. ..+.+++.+.+.... .| ..+|..++..+..++
T Consensus 214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~---~~~~~~l~~l~~~l~~~~~~--~~----~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM---DRLLPHMHNIVEYMLQRTQD--QD----ENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH---HHHGGGHHHHHHHHHHHHTC--SS----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHccC--Cc----HHHHHHHHHHHHHHh
Confidence 3455555555666788899999999998886532 3333 345667666665443 23 346778888887766
Q ss_pred hcccchhhhhhcccccccchhHHHHHhhccCCCC------CCCCCCCCCCccccccccC---CCCChHHHHHHHHHHHHh
Q psy6027 174 RKTVSDDLVENIWESTHMEKIIPSLLFNMQESGH------YQSPADPEPEAEETGKMMN---LQEDPPALAETCLRELMS 244 (531)
Q Consensus 174 ~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~------~~~~~~~~p~~~~~d~~~~---~~e~p~~lA~~CLr~l~~ 244 (531)
... ..... -...++.++|.++.+|...+. .+.+ +|...| ..-++...|..||..+..
T Consensus 285 ~~~---~~~~~--~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~---------ed~~~dd~~~~~~vr~~a~~~L~~la~ 350 (852)
T 4fdd_A 285 EQP---ICKDV--LVRHLPKLIPVLVNGMKYSDIDIILLKGDVE---------GGSGGDDTISDWNLRKCSAAALDVLAN 350 (852)
T ss_dssp TST---THHHH--HTTTHHHHHHHHHHHTSCCHHHHHHHHC---------------------CCCCHHHHHHHHHHHHHH
T ss_pred cch---hHHHH--HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc---------cccccccccccchHHHHHHHHHHHHHH
Confidence 531 01111 145778999999999953320 0000 010000 133567778889988865
Q ss_pred hhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhc-CCCChHHHHHHHHHHHHHH
Q psy6027 245 RASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDH-HSSPSLIRAKIADALSKII 323 (531)
Q Consensus 245 ~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~lv 323 (531)
......+..++..+...+.+. .|....-|+.++..+......+.. -.+..++..|-.. ...+|.+|...+.+++.+.
T Consensus 351 ~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 351 VYRDELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 428 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred hccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 443333455665566666554 587777788888887664432111 1234444444333 3456889998888888665
Q ss_pred HH
Q psy6027 324 SI 325 (531)
Q Consensus 324 ~~ 325 (531)
..
T Consensus 429 ~~ 430 (852)
T 4fdd_A 429 HW 430 (852)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 3
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.58 E-value=0.053 Score=54.83 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchH-HHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYD-FFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~-~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
..++.++..++.+.+.+++..++..|..++....+. +-..+. .+++.+...... .+ ..+|..++..+..++
T Consensus 216 ~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~~~~l~~~~~~~~~~--~~----~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--METYMGPALFAITIEAMKS--DI----DEVALQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CTTTTTTTHHHHHHHHHHC--SS----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC--Cc----hHHHHHHHHHHHHHH
Confidence 334666666666778888888999999888654321 222233 566655544332 22 246777777777766
Q ss_pred hcccc-hhhhh-----------hccc--ccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHH
Q psy6027 174 RKTVS-DDLVE-----------NIWE--STHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCL 239 (531)
Q Consensus 174 ~k~~s-d~L~~-----------~i~e--~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CL 239 (531)
..... ..... ..+. ..++..++|.++..+.+.++.+ . +++-++..-|..||
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~-------------~--~~~~~~r~~a~~~L 352 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND-------------D--DDDWNPCKAAGVCL 352 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC-------------C--TTCCSHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc-------------c--cccchHHHHHHHHH
Confidence 53100 00000 0000 1134678888887775322100 0 11336778889999
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhh-c---cCcchhHHHHHHHhhhcCCCChHHHHHH
Q psy6027 240 RELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQ-S---QYSHLIVNCILAYLNDHHSSPSLIRAKI 315 (531)
Q Consensus 240 r~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q-~---Q~~~~vls~Lv~HLd~~~~~~p~~r~~I 315 (531)
..+........+..++..+..++.+ ..|.-..-|+.++..+..... . .+---++..++++|.. ..|.+|..-
T Consensus 353 ~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a 428 (462)
T 1ibr_B 353 MLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTA 428 (462)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 9987654333344555555566654 458666667777777654332 1 1122355666666644 358999999
Q ss_pred HHHHHHHHHHh
Q psy6027 316 ADALSKIISIA 326 (531)
Q Consensus 316 v~vls~lv~~a 326 (531)
+.+++.++...
T Consensus 429 ~~~l~~~~~~~ 439 (462)
T 1ibr_B 429 AWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHhc
Confidence 99988877654
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.41 E-value=0.049 Score=51.64 Aligned_cols=183 Identities=10% Similarity=0.125 Sum_probs=118.0
Q ss_pred HHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhh
Q psy6027 104 LLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVE 183 (531)
Q Consensus 104 LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~ 183 (531)
.+++.+-..|..|...+...+....+. ...+|..+++.+...-... .+ ...|.+++.+|..++...+ .
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~--~~~~~~~i~~~L~~~l~kd-~~----~~V~~~a~~~l~~la~~l~-----~ 90 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKL--ENGEYGALVSALKKVITKD-SN----VVLVAMAGKCLALLAKGLA-----K 90 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSB--CCCCCHHHHHHHHHHHHHC-SC----HHHHHHHHHHHHHHHHHHG-----G
T ss_pred hhccCCHHHHHHHHHHHHHHHccCCCC--CCCCHHHHHHHHHHHhccC-CC----HHHHHHHHHHHHHHHHHHh-----h
Confidence 456788888888988888877652221 1234566777776655311 22 4578999999999987442 2
Q ss_pred hcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q psy6027 184 NIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFD 263 (531)
Q Consensus 184 ~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD 263 (531)
.+ ..+...|+|.++..+.+. ......-|..+|.+++... ++..+++.++..++
T Consensus 91 ~~--~~~~~~ilp~ll~~l~d~----------------------~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 91 RF--SNYASACVPSLLEKFKEK----------------------KPNVVTALREAIDAIYAST---SLEAQQESIVESLS 143 (242)
T ss_dssp GG--HHHHHHHHHHHHHGGGCC----------------------CHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHTT
T ss_pred hH--HHHHHHHHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 22 236678999999988521 1123456888888887643 47789999999998
Q ss_pred CCCCCCCchhHHHHHHHHHHHh-hccCcchhHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHHHh
Q psy6027 264 HHALWNPNIFATHVLRMLMYSV-QSQYSHLIVNCILAYLNDH-HSSPSLIRAKIADALSKIISIA 326 (531)
Q Consensus 264 ~~~~W~~~~fA~~~f~~i~~s~-q~Q~~~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~lv~~a 326 (531)
+. .|.-+..++.++..+.... +.+...--+..++.+|-.. ....+.+|....+++..++...
T Consensus 144 ~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 144 NK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 65 4655666666666654433 2222222334555555554 4567889999888888776553
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.06 E-value=0.051 Score=51.53 Aligned_cols=186 Identities=12% Similarity=0.130 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHh-cCCchhHHHhHHHHHHHHhccC
Q psy6027 50 RIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLE-SLDPDLQILATNSFVRFANIEE 128 (531)
Q Consensus 50 KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~-s~~~~l~i~a~~tf~~F~~~~~ 128 (531)
+++.-+.+.+...=|+.|.+ ++..+.+++..|++. ..-....++.++..+|. ..+...+..|+.++..++....
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~----a~~~L~~l~~~~~~~-~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKE----SLEVLEKLLTDHPKL-ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHH----HHHHHHHHHHHCSSB-CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred cCCHHHHhhhccCCHHHHHH----HHHHHHHHHccCCCC-CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555665544 566888999988763 33233788888888895 7899999999999999996543
Q ss_pred CchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCC
Q psy6027 129 DTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHY 208 (531)
Q Consensus 129 D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~ 208 (531)
. .+......+++...+.... ....+|.++..||.+++..+ +++.++|.++.-+.+
T Consensus 90 ~--~~~~~~~~ilp~ll~~l~d------~~~~vr~~a~~aL~~~~~~~-------------~~~~ll~~l~~~l~~---- 144 (242)
T 2qk2_A 90 K--RFSNYASACVPSLLEKFKE------KKPNVVTALREAIDAIYAST-------------SLEAQQESIVESLSN---- 144 (242)
T ss_dssp G--GGHHHHHHHHHHHHHGGGC------CCHHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHHHTTC----
T ss_pred h--hHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHcC----
Confidence 2 3545455666666665443 22469999999999987632 356789988877642
Q ss_pred CCCCCCCCCccccccccCCCCCh--HHHHHHHHHHHHhhhh-----hhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHH
Q psy6027 209 QSPADPEPEAEETGKMMNLQEDP--PALAETCLRELMSRAS-----FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRML 281 (531)
Q Consensus 209 ~~~~~~~p~~~~~d~~~~~~e~p--~~lA~~CLr~l~~~a~-----~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i 281 (531)
++| ..-+..+|..++...+ ...+..++..++..++.. .|.-..-|..++..+
T Consensus 145 --------------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 145 --------------------KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAEALGTL 203 (242)
T ss_dssp --------------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 123 3445566666654431 234677777788777543 354577888888888
Q ss_pred HHHhh
Q psy6027 282 MYSVQ 286 (531)
Q Consensus 282 ~~s~q 286 (531)
+..+.
T Consensus 204 ~~~vg 208 (242)
T 2qk2_A 204 IKLMG 208 (242)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 76663
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.86 E-value=2.5 Score=46.40 Aligned_cols=275 Identities=11% Similarity=0.091 Sum_probs=156.3
Q ss_pred hhHHHHHHhh---CCchhhhhHHHHHHHHHHHHhhccCCcee-eHHHHHHHHHHHccc---ccccccHHHHHHHHHHHHh
Q psy6027 34 MEKLTFYALS---SPEKLDRIGEYLYQRASRDISRRRNGYVV-IAMEAMDQLLAACHS---QTLNLFVESFLKIVQKLLE 106 (531)
Q Consensus 34 lskL~yYA~s---~P~KL~KIg~yLekR~~~Dl~r~r~g~V~-Vtl~i~~~Ll~~C~~---~~l~LFa~s~L~Ii~~LL~ 106 (531)
+|.++.+... .+.-++.+-..|-+-+..+ ..|+ -+..++..++..|.+ ..+.-|.+.++..+-.+++
T Consensus 435 l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~ 508 (861)
T 2bpt_A 435 IGRIADSVAESIDPQQHLPGVVQACLIGLQDH------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAAN 508 (861)
T ss_dssp HHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHh
Confidence 4445544432 2344666666666554321 2222 244567778888752 2365666777777777776
Q ss_pred cCC--chhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhc---------cCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 107 SLD--PDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN---------YADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 107 s~~--~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~---------~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
+.+ .+++..++.++..++....+. ....+..+++.+.+.-... ..+.+....+|...+++|..++..
T Consensus 509 ~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (861)
T 2bpt_A 509 RIDNEFNARASAFSALTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586 (861)
T ss_dssp CSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 533 677887888887777654332 2222334444444332221 012234556888999999999987
Q ss_pred ccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhh--hh-hhHH
Q psy6027 176 TVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRA--SF-NHVK 252 (531)
Q Consensus 176 ~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a--~~-t~vr 252 (531)
.+. .+ ..+++.++|.++..+...+. + ....-+..++..+.... .+ ..+.
T Consensus 587 ~~~-~~------~~~~~~l~~~l~~~l~~~~~--------------------~-~v~~~~~~~l~~l~~~~~~~~~~~l~ 638 (861)
T 2bpt_A 587 SPS-SV------EPVADMLMGLFFRLLEKKDS--------------------A-FIEDDVFYAISALAASLGKGFEKYLE 638 (861)
T ss_dssp CGG-GT------GGGHHHHHHHHHHHHHSTTG--------------------G-GTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred hhh-hh------HHHHHHHHHHHHHHHccCCC--------------------C-cHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 642 11 23677899988887753210 0 12233445555554322 12 2356
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc---CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhc
Q psy6027 253 NVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ---YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASE 329 (531)
Q Consensus 253 ~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q---~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~a~~~ 329 (531)
.++..++..+. ++.|.-...|+.++..+......+ +-.-++..+++.|... ..++.+|...+.++..++...
T Consensus 639 ~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~--- 713 (861)
T 2bpt_A 639 TFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNI--- 713 (861)
T ss_dssp HHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHh---
Confidence 67777788874 344444666788888877765322 2334555666666542 135789999998888776543
Q ss_pred cCCccHHHHHHHHHHHHHHhhc
Q psy6027 330 SIGPTVLEVLYTTLTLLCIELI 351 (531)
Q Consensus 330 s~g~sv~eal~~LLrhLr~sL~ 351 (531)
|......+..++..|...+.
T Consensus 714 --~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 714 --GADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp --GGGGHHHHHHHHHHHHHHHT
T ss_pred --hhhHHHHHHHHHHHHHHHHh
Confidence 33344555566655555544
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.56 E-value=1.6 Score=47.91 Aligned_cols=258 Identities=8% Similarity=0.074 Sum_probs=149.3
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCc-hhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhc
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDP-DLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 151 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~-~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 151 (531)
-.++.+..++..+..+ +.-+.+.++..+..+++..+. .++..++..+..++....+ .+..-+..+++.+.+....
T Consensus 575 ~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~- 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSS-VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQ- 650 (861)
T ss_dssp HHHHHHHHHHHHCGGG-TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhcc-
Confidence 4677888888888875 666788888888888887666 7777777777766654322 3445556677777666532
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCCh
Q psy6027 152 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDP 231 (531)
Q Consensus 152 ~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p 231 (531)
.+ ..+|..++.++..++...+ +.+ ...++.++|.++.++.+.+ ...+.
T Consensus 651 -~~----~~vr~~a~~~l~~l~~~~~-~~~------~~~~~~l~~~l~~~l~~~~--------------------~~~~v 698 (861)
T 2bpt_A 651 -VD----SPVSITAVGFIADISNSLE-EDF------RRYSDAMMNVLAQMISNPN--------------------ARREL 698 (861)
T ss_dssp -TT----SHHHHHHHHHHHHHHHHTG-GGG------HHHHHHHHHHHHHHHHCTT--------------------CCTTH
T ss_pred -cc----HHHHHHHHHHHHHHHHHhc-hhc------cchHHHHHHHHHHHhCCcc--------------------ccHhh
Confidence 22 2377788888888777543 111 2356789999998885321 01245
Q ss_pred HHHHHHHHHHHHhhh--hhhh-HHHHHHHHhhhccCCCCCCC----------chhHHHHHHHHHHHhhc--cCcchhHHH
Q psy6027 232 PALAETCLRELMSRA--SFNH-VKNVIQPVLIHFDHHALWNP----------NIFATHVLRMLMYSVQS--QYSHLIVNC 296 (531)
Q Consensus 232 ~~lA~~CLr~l~~~a--~~t~-vr~vl~~vl~~lD~~~~W~~----------~~fA~~~f~~i~~s~q~--Q~~~~vls~ 296 (531)
...+..|+..+.... ++.. +..++.+++..++....=.+ ..-++.++..+...+.. +.-.-.+..
T Consensus 699 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~ 778 (861)
T 2bpt_A 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGT 778 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 667888888886543 2222 56677777777664321001 12234444445444321 101112233
Q ss_pred HHHHhhhcC-C---C-ChHHHHHHHHHHHHHHHHhhhccCCccHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q psy6027 297 ILAYLNDHH-S---S-PSLIRAKIADALSKIISIAASESIGPTVL-EVLYTTLTLLCIELISDDTVVDFIRVIMRI 366 (531)
Q Consensus 297 Lv~HLd~~~-~---~-~p~~r~~Iv~vls~lv~~a~~~s~g~sv~-eal~~LLrhLr~sL~~~e~vvdl~rl~lal 366 (531)
+++-|.... . . ++.+|..-+.++..++....++...+..- +++-.+++-++..=..+.-+.+.-++++..
T Consensus 779 i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~ 854 (861)
T 2bpt_A 779 IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ 854 (861)
T ss_dssp HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 333332221 1 1 57788888888887765431222222223 566677777774223555667777776654
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.17 E-value=0.33 Score=53.48 Aligned_cols=204 Identities=11% Similarity=0.149 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchH-HHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 96 SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYD-FFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 96 s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~-~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
.++.++..+++..+.+++..++..|..++....+. +...+. .+++.+.+... ..+ ..+|..++..+..++.
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~l~~~~~~~~~--~~~----~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--METYMGPALFAITIEAMK--SDI----DEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG--CHHHHTTTHHHHHHHHHT--CSS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHhc--CCc----hHHHHHHHHHHHHHHH
Confidence 35666666666678888888899998887643221 112222 35554444322 122 3477788888877766
Q ss_pred cccc------hhhhhh------cc--cccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHH
Q psy6027 175 KTVS------DDLVEN------IW--ESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLR 240 (531)
Q Consensus 175 k~~s------d~L~~~------i~--e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr 240 (531)
.... +..... .+ ...++..++|.++..+...++.+ + +++-++..-|..||.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~------------~---~~~~~~r~~a~~~l~ 353 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND------------D---DDDWNPCKAAGVCLM 353 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSC------------C---TTCCCHHHHHHHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccc------------c---ccccHHHHHHHHHHH
Confidence 4210 000000 00 01245788998888875322100 0 113356778889999
Q ss_pred HHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHHhhhcCCCChHHHHHHH
Q psy6027 241 ELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAYLNDHHSSPSLIRAKIA 316 (531)
Q Consensus 241 ~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~HLd~~~~~~p~~r~~Iv 316 (531)
.+........+..++..+...+.+. .|.-..-|..++..+....... +---++..++..|. ...+.+|...+
T Consensus 354 ~l~~~~~~~~~~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~---d~~~~vr~~a~ 429 (876)
T 1qgr_A 354 LLATCCEDDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHCcHhhHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 8866543333556666666666543 4766666677666664332100 11123444444443 34588999888
Q ss_pred HHHHHHHHHh
Q psy6027 317 DALSKIISIA 326 (531)
Q Consensus 317 ~vls~lv~~a 326 (531)
.++..++...
T Consensus 430 ~~l~~~~~~~ 439 (876)
T 1qgr_A 430 WTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888776653
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.10 E-value=0.87 Score=45.80 Aligned_cols=210 Identities=14% Similarity=0.202 Sum_probs=120.6
Q ss_pred eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcC--CchhHHHhHHHHHHHHhccCCch--hhhhchHHHHHHHHhhh
Q psy6027 73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--DPDLQILATNSFVRFANIEEDTP--SYHRRYDFFVSKFSALC 148 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~--~~~l~i~a~~tf~~F~~~~~D~~--~y~~~y~~~V~~f~~la 148 (531)
.++.++..+...+..+.+.-+.+.++..+..+|+.. +++++..++.++..+...-.+.. ...+ +.+++.+.+..
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhc
Confidence 578888898888732236667778888888888775 78899999888877543211110 1111 22455555443
Q ss_pred hhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccc-hhHHHHHhhccCCCCCCCCCCCCCCccccccccCC
Q psy6027 149 HSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHME-KIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNL 227 (531)
Q Consensus 149 ~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d-~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~ 227 (531)
. ..+ ...|.+.+++|..++.... +.+ ..++. .++|.++..+.+.+
T Consensus 227 ~--~~~----~~vr~~~~~~l~~l~~~~~-~~~------~~~~~~~l~~~~~~~~~~~~--------------------- 272 (462)
T 1ibr_B 227 Q--CPD----TRVRVAALQNLVKIMSLYY-QYM------ETYMGPALFAITIEAMKSDI--------------------- 272 (462)
T ss_dssp T--CSS----HHHHHHHHHHHHHHHHHCG-GGC------TTTTTTTHHHHHHHHHHCSS---------------------
T ss_pred C--CCC----HHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHcCCc---------------------
Confidence 2 123 3578888999988877532 111 34677 88888776553211
Q ss_pred CCChHHHHHHHHHHHHhh--------------------hhh----hhHHHHHHHHhhhcc------CCCCCCCchhHHHH
Q psy6027 228 QEDPPALAETCLRELMSR--------------------ASF----NHVKNVIQPVLIHFD------HHALWNPNIFATHV 277 (531)
Q Consensus 228 ~e~p~~lA~~CLr~l~~~--------------------a~~----t~vr~vl~~vl~~lD------~~~~W~~~~fA~~~ 277 (531)
++....|...+..+... ... ..+..++..++.++. ..+.|....-|..+
T Consensus 273 -~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~ 351 (462)
T 1ibr_B 273 -DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (462)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHH
Confidence 01111122222222111 000 113455555556652 23568777778888
Q ss_pred HHHHHHHhhccCcchhHHHHHHHhhhc-CCCChHHHHHHHHHHHHHH
Q psy6027 278 LRMLMYSVQSQYSHLIVNCILAYLNDH-HSSPSLIRAKIADALSKII 323 (531)
Q Consensus 278 f~~i~~s~q~Q~~~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~lv 323 (531)
+..+...... -++..++.++... ...++.+|...+..++.++
T Consensus 352 L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 352 LMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 8887766542 3455666666554 3457888988888877543
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.62 E-value=3 Score=44.96 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhh-chHHHHHHHHhhhhhccC
Q psy6027 75 MEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHR-RYDFFVSKFSALCHSNYA 153 (531)
Q Consensus 75 l~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~-~y~~~V~~f~~la~~~~~ 153 (531)
..+++.|-.-|+.+ +-.+..++..+..+|++.++.++..++.++..+...-..+++..+ -++.+.+.+..+.. .
T Consensus 220 ~~il~~l~~l~~~~--~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~ 294 (591)
T 2vgl_B 220 IFILDCLSNYNPKD--DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---G 294 (591)
T ss_dssp HHHHHHHHTSCCCS--HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---S
T ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---C
Confidence 35666665556553 222455666666666778888888888988887642111113333 23455555555543 3
Q ss_pred ChhHHHHHHHHHHhhhhhhhhc
Q psy6027 154 DVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 154 d~e~~~r~R~aGL~aL~~vV~k 175 (531)
| ..+|.+||++|..++..
T Consensus 295 d----~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 295 E----PEVQYVALRNINLIVQK 312 (591)
T ss_dssp C----HHHHHHHHHHHHHHHHH
T ss_pred C----ccHHHHHHHHHHHHHHh
Confidence 3 36999999999888763
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=93.39 E-value=2.7 Score=46.21 Aligned_cols=225 Identities=7% Similarity=0.004 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHcccccccccHHHHHHHHHHHHhcC-CchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhcc
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL-DPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 152 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~-~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 152 (531)
++..+..++..+..+ +.-|.+.++.++...|+.. +.+++..++.++..++..-.+ .+....+.+++.+.+.-....
T Consensus 628 a~~~l~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGE-FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--NIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHhCCcc
Confidence 566777778777775 6667788888888888775 888888888888877754322 344445667777666554321
Q ss_pred CChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChH
Q psy6027 153 ADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPP 232 (531)
Q Consensus 153 ~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~ 232 (531)
.+ ...|...+.++..++...+. ++ ...+..++|.++..+......+ +.|. .+-..+..
T Consensus 705 ~~----~~~~~~~~~~l~~i~~~~g~-~~------~~~l~~~~~~l~~~~~~~~~~~----------d~~~-~~~~~~~r 762 (876)
T 1qgr_A 705 VH----RSVKPQILSVFGDIALAIGG-EF------KKYLEVVLNTLQQASQAQVDKS----------DYDM-VDYLNELR 762 (876)
T ss_dssp SC----GGGHHHHHHHHHHHHHHHGG-GG------GGGHHHHHHHHHHHHTCCCCTT----------CHHH-HHHHHHHH
T ss_pred cc----HHhhHHHHHHHHHHHHHhch-hH------HHHHHHHHHHHHHHHhccCCCC----------ChHH-HHHHHHHH
Confidence 22 23777888888888775542 11 2256678887766553211000 0000 00000122
Q ss_pred HHHHHHHHHHHhhhh---------hhhH----HHHHHHHhhhccCCCCCCC-chhHHHHHHHHHHHhhc-c-Ccc---hh
Q psy6027 233 ALAETCLRELMSRAS---------FNHV----KNVIQPVLIHFDHHALWNP-NIFATHVLRMLMYSVQS-Q-YSH---LI 293 (531)
Q Consensus 233 ~lA~~CLr~l~~~a~---------~t~v----r~vl~~vl~~lD~~~~W~~-~~fA~~~f~~i~~s~q~-Q-~~~---~v 293 (531)
.-+..++..++.... ...+ ..++..+....++...|.. ...|..++..+...... + ..| -+
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 842 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM 842 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHH
Confidence 223455555543211 1223 3344333333344333544 78899999998876633 2 122 34
Q ss_pred HHHHHH-HhhhcCCCChHHHHHHHHHHHHHHHHh
Q psy6027 294 VNCILA-YLNDHHSSPSLIRAKIADALSKIISIA 326 (531)
Q Consensus 294 ls~Lv~-HLd~~~~~~p~~r~~Iv~vls~lv~~a 326 (531)
+..+++ .++. .++.+|...+.++..++.++
T Consensus 843 i~~ll~~~l~~---~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 843 IHELLTEGRRS---KTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc---CCHhHHHHHHHHHHHHHHhh
Confidence 555555 5533 45889998888888776653
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.78 E-value=1.5 Score=51.01 Aligned_cols=218 Identities=10% Similarity=0.107 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCc--hhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhc
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDP--DLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 151 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~--~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 151 (531)
++.++.+++..|+.. +.-+...++..+..+|+..+. +++..++..|..+....... .+..-++.+++.+......
T Consensus 454 ~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~l~~llp~L~~~l~d- 530 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGD- 530 (1230)
T ss_dssp HHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTC-
T ss_pred HHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-HHHhHHHHHHHHHHHHHcc-
Confidence 677888999999875 766778888888888876543 78888888888876543222 2333344566666554332
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccc---ccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCC
Q psy6027 152 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWE---STHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQ 228 (531)
Q Consensus 152 ~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e---~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~ 228 (531)
...++|..++.++..++...+.. . ..|. ...++.|+|.++..+...+ . .
T Consensus 531 -----~~~~v~~~al~~l~~l~~~~~~~--~-~~~~~~~~~~~~~ll~~ll~~l~~~d----------------~----~ 582 (1230)
T 1u6g_C 531 -----PFYKITSEALLVTQQLVKVIRPL--D-QPSSFDATPYIKDLFTCTIKRLKAAD----------------I----D 582 (1230)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHHCCS--S-SCCCCCCHHHHHHHHHHHHHHHSCSS----------------S----C
T ss_pred -----cchHHHHHHHHHHHHHHHHhcCc--c-cccccchHHHHHHHHHHHHHHHhccC----------------C----C
Confidence 11357778899998888654320 0 0011 1246789999888774211 0 1
Q ss_pred CChHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhc-
Q psy6027 229 EDPPALAETCLRELMSRAS---FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDH- 304 (531)
Q Consensus 229 e~p~~lA~~CLr~l~~~a~---~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~- 304 (531)
.+...-|..|+..|..... ...+..++..+..-+.+. | ...-|...+..+..+.-..+-..++..++..|...
T Consensus 583 ~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~-~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l 659 (1230)
T 1u6g_C 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--I-TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 659 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--S-HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--h-hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 1244567788888865432 122455555554444432 1 12234555555543221111123444455555443
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy6027 305 HSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 305 ~~~~p~~r~~Iv~vls~lv~~ 325 (531)
...++.+|...+..+..++..
T Consensus 660 ~~~~~~~r~~a~~al~~l~~~ 680 (1230)
T 1u6g_C 660 RKNQRALKLGTLSALDILIKN 680 (1230)
T ss_dssp TSCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhc
Confidence 345677888887777766554
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=92.26 E-value=0.83 Score=47.56 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccC
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYA 153 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~ 153 (531)
+++++.++...+..+ .+.+.++.++..+.++.+...+..++..+..++....+ ++ .+.+++.+.+++...
T Consensus 107 a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~---~~--~~~l~~~l~~l~~d~-- 176 (588)
T 1b3u_A 107 AVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS---AV--KAELRQYFRNLCSDD-- 176 (588)
T ss_dssp HHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH---HH--HHHHHHHHHHHHTCS--
T ss_pred HHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH---HH--HHHHHHHHHHHhCCC--
Confidence 344455555444332 23345666777777777778888888877776654332 22 356778777777532
Q ss_pred ChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHH
Q psy6027 154 DVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPA 233 (531)
Q Consensus 154 d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~ 233 (531)
+ ...|.+++++|..++...+.+ ...+.++|.++..+.+. +.+...
T Consensus 177 ~----~~VR~~a~~~l~~l~~~~~~~---------~~~~~l~~~l~~~~~d~----------------------~~~vr~ 221 (588)
T 1b3u_A 177 T----PMVRRAAASKLGEFAKVLELD---------NVKSEIIPMFSNLASDE----------------------QDSVRL 221 (588)
T ss_dssp C----HHHHHHHHHHHHHHHHTSCHH---------HHHHTHHHHHHHHHTCS----------------------CHHHHT
T ss_pred C----HHHHHHHHHHHHHHHHHhcHH---------hHHHHHHHHHHHHhcCC----------------------cHHHHH
Confidence 2 347888899998877643211 12346788777655321 112233
Q ss_pred HHHHHHHHHHhhhhhhhH-HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhc-cCcchhHHHHHHHhhhcCCCChHH
Q psy6027 234 LAETCLRELMSRASFNHV-KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQS-QYSHLIVNCILAYLNDHHSSPSLI 311 (531)
Q Consensus 234 lA~~CLr~l~~~a~~t~v-r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~-Q~~~~vls~Lv~HLd~~~~~~p~~ 311 (531)
.|..||..+......... ..++..+...++ +..|.-..-|..++..+...... .+.--++..+++-+. ..++.+
T Consensus 222 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~v 297 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK---DCEAEV 297 (588)
T ss_dssp THHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT---CSSHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhC---CCcHHH
Confidence 466666666543322222 234444444444 44576677777778777665421 111123444444443 356889
Q ss_pred HHHHHHHHHHHHH
Q psy6027 312 RAKIADALSKIIS 324 (531)
Q Consensus 312 r~~Iv~vls~lv~ 324 (531)
|...+..+..++.
T Consensus 298 r~~a~~~l~~~~~ 310 (588)
T 1b3u_A 298 RAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988887776654
No 14
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.66 E-value=11 Score=40.93 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=133.0
Q ss_pred HHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHH
Q psy6027 36 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQIL 115 (531)
Q Consensus 36 kL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~ 115 (531)
-|..|+...|+--+++-.+|.+-+.+ ....+..+-.|.+++.+.++.-... +-......+.+..+|++.+++++..
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~~aV~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~~~d~~vr~~ 332 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATN-TETSKNVGNAILYETVLTIMDIKSE---SGLRVLAINILGRFLLNNDKNIRYV 332 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHT-SCCSSTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHTCSSTTTHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhCCCCchHHH
Confidence 45566666776566666677664432 1122333446777887777664322 2223346677777888899999999
Q ss_pred hHHHHHHHHhccCCchhhhhchH-HHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchh
Q psy6027 116 ATNSFVRFANIEEDTPSYHRRYD-FFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKI 194 (531)
Q Consensus 116 a~~tf~~F~~~~~D~~~y~~~y~-~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~I 194 (531)
|..++..++... |.....|. .++ -|.. .+| ..+|...|..|..++. ..+++.|
T Consensus 333 aL~~L~~i~~~~---p~~~~~~~~~i~-----~~l~-d~d----~~Ir~~alelL~~l~~-------------~~nv~~i 386 (618)
T 1w63_A 333 ALTSLLKTVQTD---HNAVQRHRSTIV-----DCLK-DLD----VSIKRRAMELSFALVN-------------GNNIRGM 386 (618)
T ss_dssp HHHHHHHHHHHH---HHHHGGGHHHHH-----HGGG-SSC----HHHHHHHHHHHHHHCC-------------SSSTHHH
T ss_pred HHHHHHHHHhhC---HHHHHHHHHHHH-----HHcc-CCC----hhHHHHHHHHHHHHcc-------------cccHHHH
Confidence 999988887653 23333332 222 1111 123 3477778877777765 2346778
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhhccCCCCCCCch
Q psy6027 195 IPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--FNHVKNVIQPVLIHFDHHALWNPNI 272 (531)
Q Consensus 195 Vp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~t~vr~vl~~vl~~lD~~~~W~~~~ 272 (531)
++-++.-+.+. + ......+++.|...|. .+.....++.++..+...+.+....
T Consensus 387 v~eL~~~l~~~------------------------d-~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~ 441 (618)
T 1w63_A 387 MKELLYFLDSC------------------------E-PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDD 441 (618)
T ss_dssp HHHHHHHHHHC------------------------C-HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSS
T ss_pred HHHHHHHHHhC------------------------C-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHH
Confidence 88777665321 1 1233334444433332 2446667777777776666554444
Q ss_pred hHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 273 FATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 273 fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
. +.++..+....+ +-+-.++..+++.|+.....++..+ .++.++++....
T Consensus 442 ~-~~~l~~ii~~~p-~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~ 491 (618)
T 1w63_A 442 A-VPNLIQLITNSV-EMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDL 491 (618)
T ss_dssp H-HHHHHHHHHHSC-STHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCh-hHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHH
Confidence 3 344444443322 2333467788888887544555555 578888876544
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.39 E-value=5.3 Score=46.50 Aligned_cols=211 Identities=10% Similarity=0.113 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCc---hh-hhhchHHHHHHHHhhhh
Q psy6027 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT---PS-YHRRYDFFVSKFSALCH 149 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~---~~-y~~~y~~~V~~f~~la~ 149 (531)
++.++..+...|.++ ..+.++..+-..|...++..|..++..+..++..-.+. .. ....+..+++.+.+...
T Consensus 68 A~~~L~~l~~~~~~~----~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 68 AVKCLGPLVSKVKEY----QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHHHHHTTSCHH----HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc
Confidence 566677777777552 22344444434444566777878888888887543221 01 12335678887777664
Q ss_pred hccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCC
Q psy6027 150 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQE 229 (531)
Q Consensus 150 ~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e 229 (531)
. .++ .+.|..++.+|..++...+ +.+ ..+++.+++.++..+++. +.
T Consensus 144 ~-~~~----~~~~~~al~~l~~~~~~~~-~~l------~~~~~~ll~~l~~~L~~~----------------------~~ 189 (1230)
T 1u6g_C 144 K-QED----VSVQLEALDIMADMLSRQG-GLL------VNFHPSILTCLLPQLTSP----------------------RL 189 (1230)
T ss_dssp C-CSC----HHHHHHHHHHHHHHHHHTC-SSC------TTTHHHHHHHHGGGGGCS----------------------SH
T ss_pred C-CCc----hHHHHHHHHHHHHHHHHhH-hHH------HHHHHHHHHHHHHHHcCC----------------------cH
Confidence 3 122 3688999999998876432 111 235678888887776421 11
Q ss_pred ChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhc---cCcchhHHHHHHHhhhcCC
Q psy6027 230 DPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQS---QYSHLIVNCILAYLNDHHS 306 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~---Q~~~~vls~Lv~HLd~~~~ 306 (531)
....-|..||..+........+..++..++.++.+...|....-|..++..+...... .|---++..+++.+. .
T Consensus 190 ~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~---d 266 (1230)
T 1u6g_C 190 AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN---V 266 (1230)
T ss_dssp HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS---S
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---C
Confidence 2345577788887665433334556666666665444354566688888888776532 233346666666554 3
Q ss_pred CChHHHHHHHHHHHHHHHH
Q psy6027 307 SPSLIRAKIADALSKIISI 325 (531)
Q Consensus 307 ~~p~~r~~Iv~vls~lv~~ 325 (531)
.++.+|...++.+..++..
T Consensus 267 ~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678999888888877654
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.13 E-value=2.6 Score=43.75 Aligned_cols=191 Identities=12% Similarity=0.169 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 94 VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 94 a~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
.+.++..+..+++..+++++..++..|..|+..-.+..........+++.+.++.... + .+.|.+...+|..++
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~----~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--N----QHVKSALASVIMGLS 352 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--C----HHHHHHHHTTGGGGH
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHHH
Confidence 4455666666777777888888888888887653322011122445666666655331 2 367888899998887
Q ss_pred hcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhh-hhHH
Q psy6027 174 RKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASF-NHVK 252 (531)
Q Consensus 174 ~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~-t~vr 252 (531)
...+.+ ...+.++|.++.-+.+. .++...-|..+|..+...... ....
T Consensus 353 ~~~~~~---------~~~~~l~p~l~~~l~d~----------------------~~~Vr~~a~~~l~~l~~~~~~~~~~~ 401 (588)
T 1b3u_A 353 PILGKD---------NTIEHLLPLFLAQLKDE----------------------CPEVRLNIISNLDCVNEVIGIRQLSQ 401 (588)
T ss_dssp HHHCHH---------HHHHHTHHHHHHHHTCS----------------------CHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred HHhhHh---------HHHHHHHHHHHHHhCCC----------------------chHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 644311 11346788887766421 111223344445555432211 1234
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc-CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 253 NVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ-YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 253 ~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q-~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
.++..+...+. +..|.-..-|..++..+....... ..-.++..+++.|. ..++.+|...+..+..++..
T Consensus 402 ~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 402 SLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV---DHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHH
Confidence 45555555554 355765555666666665554322 11123344444443 23577888888877766543
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.00 E-value=1.7 Score=41.97 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=113.7
Q ss_pred HhcCCchhHHHhHHHHHH-HHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhh-
Q psy6027 105 LESLDPDLQILATNSFVR-FANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLV- 182 (531)
Q Consensus 105 L~s~~~~l~i~a~~tf~~-F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~- 182 (531)
+++.+-.-|..|...+.. +++...+-..-..+|..+++-+.+.-.. | .....|.+++++|..++.. |+
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D--~n~~v~~~A~~al~~la~~-----l~~ 94 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---D--ANIQAVALAAQSVELICDK-----LKT 94 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---C--SCHHHHHHHHHHHHHHHHH-----HCT
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---C--CCHHHHHHHHHHHHHHHHh-----ccc
Confidence 467788878888888887 7643211100023456677666655422 2 1145689999999998753 33
Q ss_pred hhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--h--hhHHHHHHHH
Q psy6027 183 ENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--F--NHVKNVIQPV 258 (531)
Q Consensus 183 ~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~--t~vr~vl~~v 258 (531)
.. ++..+...++|++|+-+.+. ......-|..||..++...+ . +++..+++.+
T Consensus 95 ~~-f~~~y~~~llp~ll~~l~dk----------------------k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 95 PG-FSKDYVSLVFTPLLDRTKEK----------------------KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDI 151 (249)
T ss_dssp TT-SCHHHHHHHHHHHHHGGGCC----------------------CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHH
Confidence 22 22146678999999888421 11234557888888887542 1 2377999999
Q ss_pred hhhccCCCCCCCchhHHHHHHHHHHHhhc---cC-cc---hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 259 LIHFDHHALWNPNIFATHVLRMLMYSVQS---QY-SH---LIVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 259 l~~lD~~~~W~~~~fA~~~f~~i~~s~q~---Q~-~~---~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
+..+++. .|.-+.-|+.++.......+. +. .| -++..+++.++ ..++.+|..=+++++.+...
T Consensus 152 ~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 152 LEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 9999876 575566666666666554432 11 12 24555555553 34688999888887766554
No 18
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.89 E-value=2.1 Score=41.32 Aligned_cols=186 Identities=11% Similarity=0.110 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhccCCceeeHHHHHHH-HHHHcccccc---cccHHHHHHHHHHHH-hcCCchhHHHhHHHHHHHHhccC
Q psy6027 54 YLYQRASRDISRRRNGYVVIAMEAMDQ-LLAACHSQTL---NLFVESFLKIVQKLL-ESLDPDLQILATNSFVRFANIEE 128 (531)
Q Consensus 54 yLekR~~~Dl~r~r~g~V~Vtl~i~~~-Ll~~C~~~~l---~LFa~s~L~Ii~~LL-~s~~~~l~i~a~~tf~~F~~~~~ 128 (531)
...+++.+.=|+.|. =+++.+.. +++.|++- . .=| ..++.++...| ...|...+..|+..+..++....
T Consensus 20 ~f~~~l~s~~w~eRk----~al~~L~~~~~~~~~~i-~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 20 DFQERITSSKWKDRV----EALEEFWDSVLSQTKKL-KSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp THHHHHTCSSHHHHH----HHHHHHHHHTGGGCCCB-CCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhcCCHHHHH----HHHHHHHHHHHhcCCcc-ccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 455556555555553 35666667 77788763 2 122 46788888888 45788889999999999996553
Q ss_pred -Cchhhh-hchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccc-cccchhHHHHHhhccCC
Q psy6027 129 -DTPSYH-RRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWES-THMEKIIPSLLFNMQES 205 (531)
Q Consensus 129 -D~~~y~-~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~-~~~d~IVp~iL~Nl~~~ 205 (531)
+ .+. .....+++...+...+. ....|.++-.||.+++..+. + +.. ..+|.+++.++..+.+.
T Consensus 94 ~~--~f~~~y~~~llp~ll~~l~dk------k~~V~~aa~~al~~i~~~~~--~-----~~~~~~l~~ll~~l~~~l~~k 158 (249)
T 2qk1_A 94 TP--GFSKDYVSLVFTPLLDRTKEK------KPSVIEAIRKALLTICKYYD--P-----LASSGRNEDMLKDILEHMKHK 158 (249)
T ss_dssp TT--TSCHHHHHHHHHHHHHGGGCC------CHHHHHHHHHHHHHHHHHSC--T-----TCTTCTTHHHHHHHHHHTTCS
T ss_pred cc--cccHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHcc--c-----cccCCcHHHHHHHHHHHHcCC
Confidence 3 344 33445666665544432 23477777788888877541 1 111 13788999888877421
Q ss_pred CCCCCCCCCCCCccccccccCCCCCh--HHHHHHHHHHHHhhhhh--h----hH-HHHHHHHhhhccCCCCCCCchhHHH
Q psy6027 206 GHYQSPADPEPEAEETGKMMNLQEDP--PALAETCLRELMSRASF--N----HV-KNVIQPVLIHFDHHALWNPNIFATH 276 (531)
Q Consensus 206 ~~~~~~~~~~p~~~~~d~~~~~~e~p--~~lA~~CLr~l~~~a~~--t----~v-r~vl~~vl~~lD~~~~W~~~~fA~~ 276 (531)
+| ..-+..+|..++..+.. . .+ ..++..+...++..+. .-..-|..
T Consensus 159 ------------------------~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-~VR~aA~~ 213 (249)
T 2qk1_A 159 ------------------------TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-AIRTIGFE 213 (249)
T ss_dssp ------------------------SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-HHHHHHHH
T ss_pred ------------------------ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Confidence 23 34466666666655432 2 25 6777777777755431 11677888
Q ss_pred HHHHHHHHh
Q psy6027 277 VLRMLMYSV 285 (531)
Q Consensus 277 ~f~~i~~s~ 285 (531)
++..++..+
T Consensus 214 ~l~~i~~~v 222 (249)
T 2qk1_A 214 SFAILIKIF 222 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887766
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.40 E-value=2.7 Score=38.41 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
...+..+-.+|++.+++++..++..+..++....+...... -.+.++.+.++... ++ ..+|..++.+|..+..
T Consensus 43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~--~~----~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-DAGGVEVLVKLLTS--TD----SEVQKEAARALANIAS 115 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTC--SS----HHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHHcC--CC----HHHHHHHHHHHHHHHc
Confidence 35667777788888899999998888877754322212221 22467888887764 23 3578888888888874
Q ss_pred cccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhh--hhH-
Q psy6027 175 KTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASF--NHV- 251 (531)
Q Consensus 175 k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~--t~v- 251 (531)
. +++....+.+ ..++|.++.-+.+. ..+....|-.||.+|...... ..+
T Consensus 116 ~--~~~~~~~~~~----~~~i~~L~~~l~~~----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~ 167 (252)
T 4hxt_A 116 G--PDEAIKAIVD----AGGVEVLVKLLTST----------------------DSEVQKEAARALANIASGPDEAIKAIV 167 (252)
T ss_dssp S--CHHHHHHHHH----TTHHHHHHHHTTCS----------------------CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred C--CHHHHHHHHH----CCCHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2222222211 24678777666421 112345577788888643211 111
Q ss_pred -HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcc----hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy6027 252 -KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSH----LIVNCILAYLNDHHSSPSLIRAKIADALSKIIS 324 (531)
Q Consensus 252 -r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~----~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~ 324 (531)
..++..++..+.+.+ +.-...|..++..+...-+.+-.. -++..|++.+.+ .++.+|...+.++..+..
T Consensus 168 ~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHHHHc
Confidence 236677777887544 212444555555543211111111 134555555543 457888888887776644
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=87.65 E-value=3.9 Score=43.21 Aligned_cols=214 Identities=11% Similarity=0.077 Sum_probs=107.3
Q ss_pred eHHHHHHHHHHHccccccc-ccHHHHHHHHHHHHh-cCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 73 IAMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLE-SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~-LFa~s~L~Ii~~LL~-s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
-++..+++|+..-+...+. +.-..++..+-.+|. +.+++++..|+-.+..++....+. .-.---.+.|+.+.++...
T Consensus 95 ~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-~~~vv~~Gaip~Lv~LL~s 173 (529)
T 3tpo_A 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-TKAVVDGGAIPAFISLLAS 173 (529)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHcC
Confidence 3566777877543322111 122334444444554 467889999998888887543322 1111223578899888766
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCC
Q psy6027 151 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQED 230 (531)
Q Consensus 151 ~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~ 230 (531)
. + ..+|...+.||..++.. +.+....+.+ .-++|.++.-+...+. . ...
T Consensus 174 ~--~----~~v~e~A~~aL~nLa~~--~~~~r~~i~~----~g~i~~Ll~lL~~~~~---------------~----~~~ 222 (529)
T 3tpo_A 174 P--H----AHISEQAVWALGNIAGA--GSAFRDLVIK----HGAIDPLLALLAVPDL---------------S----TLA 222 (529)
T ss_dssp S--C----HHHHHHHHHHHHHHHTT--CHHHHHHHHH----TTCHHHHHHTTCSSCG---------------G----GSC
T ss_pred C--C----HHHHHHHHHHHHHHhcc--CHHHHHHHHH----cCCcHHHHHHHhccch---------------h----HhH
Confidence 4 2 23666777787777542 1222221111 1357777766542210 0 111
Q ss_pred h--HHHHHHHHHHHHhhh----hhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHH
Q psy6027 231 P--PALAETCLRELMSRA----SFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAY 300 (531)
Q Consensus 231 p--~~lA~~CLr~l~~~a----~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~H 300 (531)
. ...+..||.++.... ....+..++..++..+.+.+.. -...|..++..+...-... ..--++..|++.
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~-v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH-HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHH-HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 2 233556677775422 2344667777777777654421 0222333333332110000 011245566666
Q ss_pred hhhcCCCChHHHHHHHHHHHHH
Q psy6027 301 LNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 301 Ld~~~~~~p~~r~~Iv~vls~l 322 (531)
|.+. ++.++...+.++..+
T Consensus 302 L~~~---~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 302 LGAT---ELPIVTPALRAIGNI 320 (529)
T ss_dssp HTCS---CHHHHHHHHHHHHHH
T ss_pred hcCC---ChhHHHHHHHHHHHH
Confidence 6543 466776666665543
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.30 E-value=2.6 Score=39.00 Aligned_cols=208 Identities=13% Similarity=0.083 Sum_probs=106.8
Q ss_pred eHHHHHHHHHHHccccccc-ccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhc
Q psy6027 73 IAMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 151 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~-LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 151 (531)
-++..++.++....++ .. +.-...+..+-.+|++.+++++..++..+..++....+...... -.+.++.+.++-...
T Consensus 31 ~a~~~L~~~l~~~~~~-~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~ 108 (252)
T 4db8_A 31 SATRKFSQILSDGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSP 108 (252)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHcCCCch-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCC
Confidence 3344444445442222 22 22344566666777888899999999888887753322211111 124778888777652
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhcccchhhh-hhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCC
Q psy6027 152 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLV-ENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQED 230 (531)
Q Consensus 152 ~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~-~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~ 230 (531)
+ ..+|..++.+|..+.... +.. ..+.+ ..++|.++.-+.+. +..
T Consensus 109 --~----~~v~~~a~~~L~~l~~~~---~~~~~~~~~----~~~i~~L~~lL~~~----------------------~~~ 153 (252)
T 4db8_A 109 --N----EQILQEALWALSNIASGG---NEQIQAVID----AGALPALVQLLSSP----------------------NEQ 153 (252)
T ss_dssp --C----HHHHHHHHHHHHHHTTSC---HHHHHHHHH----TTHHHHHHHGGGCS----------------------CHH
T ss_pred --C----HHHHHHHHHHHHHhhcCC---chHHHHHHH----CCCHHHHHHHHhCC----------------------CHH
Confidence 3 357888888888876521 111 11111 14788887776421 112
Q ss_pred hHHHHHHHHHHHHhhhh-hhh-H--HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcch----hHHHHHHHhh
Q psy6027 231 PPALAETCLRELMSRAS-FNH-V--KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHL----IVNCILAYLN 302 (531)
Q Consensus 231 p~~lA~~CLr~l~~~a~-~t~-v--r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~----vls~Lv~HLd 302 (531)
....|-.+|.+|..... ... + ..++.+++..+++.+. .-...|..++..+...-+.+...+ ++..+++.|.
T Consensus 154 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 154 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence 34557777888764321 111 1 2356777788876531 113445555554432111111111 2333333332
Q ss_pred hcCCCChHHHHHHHHHHHH
Q psy6027 303 DHHSSPSLIRAKIADALSK 321 (531)
Q Consensus 303 ~~~~~~p~~r~~Iv~vls~ 321 (531)
..++.+|...+.++..
T Consensus 233 ---~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 233 ---HENEKIQKEAQEALEK 248 (252)
T ss_dssp ---CSSSHHHHTHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHH
Confidence 3456777776666553
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.60 E-value=3.3 Score=37.80 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhccc
Q psy6027 98 LKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTV 177 (531)
Q Consensus 98 L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~ 177 (531)
+..+-.+|++.+++.+..|+..+..++....+....+ --.+.++.+.++.... + ..+|..++.+|..+...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~~--~----~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAI-VDAGGVEVLVKLLTST--D----SEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHHTTCS--C----HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH-HHCCCHHHHHHHHhCC--C----HHHHHHHHHHHHHHHcC--
Confidence 3444556677789999999988888775443221111 1235788888887653 2 34778888888877653
Q ss_pred chhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhh-hh-hhH--HH
Q psy6027 178 SDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRA-SF-NHV--KN 253 (531)
Q Consensus 178 sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a-~~-t~v--r~ 253 (531)
+++....+.+ ..++|.++.-+.+. ..+....|-.+|.+|.... .. ..+ ..
T Consensus 75 ~~~~~~~~~~----~~~i~~l~~ll~~~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 128 (252)
T 4hxt_A 75 PDEAIKAIVD----AGGVEVLVKLLTST----------------------DSEVQKEAARALANIASGPDEAIKAIVDAG 128 (252)
T ss_dssp CHHHHHHHHH----TTHHHHHHHHTTCS----------------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ChHHHHHHHH----CCCHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 1222222211 14678777666411 1123455667777776321 11 111 13
Q ss_pred HHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCc----chhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q psy6027 254 VIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYS----HLIVNCILAYLNDHHSSPSLIRAKIADALSKII 323 (531)
Q Consensus 254 vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~----~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv 323 (531)
++..++..+++.+ |.-...|..++..+...-+..-. .-++..|++.|.+ .++.+|...+.++..+.
T Consensus 129 ~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 129 GVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHH
Confidence 5777888887655 32244555555555321111101 2256667766653 45888888888877553
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=84.90 E-value=5.5 Score=39.87 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcccccccccH-H-HHHHHHHHHHhcC-CchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 74 AMEAMDQLLAACHSQTLNLFV-E-SFLKIVQKLLESL-DPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~LFa-~-s~L~Ii~~LL~s~-~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
++..+++++..-....+.-.. . .++..+-.+|.+. +++++..++..+..++....+...... -.+.++.+.++...
T Consensus 40 A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~ 118 (450)
T 2jdq_A 40 ATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVI-QAGAVPIFIELLSS 118 (450)
T ss_dssp HHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-hCCCHHHHHHHHcC
Confidence 455566665422221121112 2 4566666667776 889999999988888753322111111 14688999988875
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCC
Q psy6027 151 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQED 230 (531)
Q Consensus 151 ~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~ 230 (531)
. + ..+|..++.+|..+.... ......+.+ ..++|.++.-+.+. . ..+
T Consensus 119 ~--~----~~vr~~a~~~L~~l~~~~--~~~~~~~~~----~~~i~~L~~~l~~~-----------------~----~~~ 165 (450)
T 2jdq_A 119 E--F----EDVQEQAVWALGNIAGDS--TMCRDYVLD----CNILPPLLQLFSKQ-----------------N----RLT 165 (450)
T ss_dssp S--C----HHHHHHHHHHHHHHHTTC--HHHHHHHHH----TTCHHHHHHHTTSC-----------------C----CHH
T ss_pred C--C----HHHHHHHHHHHHHHccCC--HHHHHHHHH----CCCHHHHHHHhcCC-----------------C----CHH
Confidence 3 3 357888888888876531 111111111 24688777766421 0 112
Q ss_pred hHHHHHHHHHHHHhhh----hhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccC----cchhHHHHHHHhh
Q psy6027 231 PPALAETCLRELMSRA----SFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQY----SHLIVNCILAYLN 302 (531)
Q Consensus 231 p~~lA~~CLr~l~~~a----~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~----~~~vls~Lv~HLd 302 (531)
....|..||.+|.... ....+..++.+++..+.+.+. .-..-|..++..+........ ..-++..+++.|.
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 4455777888887432 223356777888888765431 112223333333321100000 1125566666664
Q ss_pred hcCCCChHHHHHHHHHHHHH
Q psy6027 303 DHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 303 ~~~~~~p~~r~~Iv~vls~l 322 (531)
..++.+|...+.++..+
T Consensus 245 ---~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 245 ---HNDYKVVSPALRAVGNI 261 (450)
T ss_dssp ---CSCHHHHHHHHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHHH
Confidence 34578888877777654
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=84.23 E-value=5.8 Score=35.55 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 96 SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 96 s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
.....+..||++.+++++..|+..+..++....+...... -.+.++.+.++-... + ..+|..++.+|..+...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~--~----~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSP--N----EQILQEALWALSNIASG 84 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS--C----HHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCC--C----HHHHHHHHHHHHHHhcC
Confidence 3445677889999999999999998888744322211111 125778888776643 3 24788888888887642
Q ss_pred ccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhH----
Q psy6027 176 TVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHV---- 251 (531)
Q Consensus 176 ~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~v---- 251 (531)
+++....+.+ ...||.++.-+.+. +.+....|-.+|.+|.... ....
T Consensus 85 --~~~~~~~i~~----~g~i~~L~~lL~~~----------------------~~~v~~~a~~~L~~l~~~~-~~~~~~~~ 135 (210)
T 4db6_A 85 --GNEQIQAVID----AGALPALVQLLSSP----------------------NEQILQEALWALSNIASGG-NEQIQAVI 135 (210)
T ss_dssp --CHHHHHHHHH----TTCHHHHHHHTTCS----------------------CHHHHHHHHHHHHHHTTSC-HHHHHHHH
T ss_pred --CcHHHHHHHH----CCCHHHHHHHHcCC----------------------cHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 2222111211 13678887776421 1123345667777876422 1111
Q ss_pred -HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcc----hhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy6027 252 -KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSH----LIVNCILAYLNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 252 -r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~----~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~l 322 (531)
..++.+++..+++.+ ..-...|..++..+...-+.+-.. -.+..|++.|. ..++.+|.....++..+
T Consensus 136 ~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 136 DAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS---HENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 235677788887643 111455555555554321111111 23444444444 24577777766665543
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.80 E-value=36 Score=38.65 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=113.5
Q ss_pred hHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhccccccc
Q psy6027 112 LQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHM 191 (531)
Q Consensus 112 l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~ 191 (531)
++..++..|..+.....+ .+......|+..+.++..... +.....+++..++.-++.++... ......-.+.++
T Consensus 262 vk~~~~~~l~~l~~~~~~--~f~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~al~fl~~~~~~~---~~~~~~~~~~~l 335 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYED--VFGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIP---KYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHCC-SCTTSHHHHHHHHHHHHHHHTSH---HHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC-CCcCcHHHHHHHHHHHHHHhCcH---hHHHHHcCchHH
Confidence 345566777766643221 122222334444443333211 11233568888888888877521 111111012467
Q ss_pred chhH-HHHHhhccCCCCCCCCCCCCCCc-cccccccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcc-----C
Q psy6027 192 EKII-PSLLFNMQESGHYQSPADPEPEA-EETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFD-----H 264 (531)
Q Consensus 192 d~IV-p~iL~Nl~~~~~~~~~~~~~p~~-~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD-----~ 264 (531)
..|+ +.++-+|.-+++.....+..|.. ...+...++..+|..-|..||..+...-....+..++.-+..++. .
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCc
Confidence 8888 78888886332211111111100 000000123458999999999999754321222233333323333 1
Q ss_pred CCCCCCchhHHHHHHHHHHHh---hccC----cc-hhHHHHHHHhh----hcCCCChHHHHHHHHHHHHHHHHhhhccCC
Q psy6027 265 HALWNPNIFATHVLRMLMYSV---QSQY----SH-LIVNCILAYLN----DHHSSPSLIRAKIADALSKIISIAASESIG 332 (531)
Q Consensus 265 ~~~W~~~~fA~~~f~~i~~s~---q~Q~----~~-~vls~Lv~HLd----~~~~~~p~~r~~Iv~vls~lv~~a~~~s~g 332 (531)
+.-|....-|+..|..+.... .... .+ -+...+++++. ......|.+|.....+++..... ..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-----~~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-----LT 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-----SC
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-----CC
Confidence 345877777888888775321 1011 11 22233334432 22113788898888887754322 12
Q ss_pred ccH-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Q psy6027 333 PTV-LEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIA 370 (531)
Q Consensus 333 ~sv-~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a 370 (531)
+.. -.++..++++ |..++.+|. ..-+.|++.+.
T Consensus 491 ~~~l~~~l~~l~~~----L~d~~~~V~-~~A~~Al~~~~ 524 (960)
T 1wa5_C 491 KAQLIELMPILATF----LQTDEYVVY-TYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHHHHHHHH----TTCSCHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----hCCCChhHH-HHHHHHHHHHH
Confidence 222 2444444444 444444443 45666777654
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.31 E-value=8.3 Score=40.11 Aligned_cols=191 Identities=19% Similarity=0.154 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhccc
Q psy6027 98 LKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTV 177 (531)
Q Consensus 98 L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~ 177 (531)
+..+-..|.+.+++.+..|+..+........+.+.-.---.+.|+.+.++-.... + ..+|..++.+|..+....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~----~~v~~~A~~~L~~l~~~~- 149 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-F----PQLQFEAAWALTNIASGT- 149 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-C----HHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-C----HHHHHHHHHHHHHHhCCC-
Confidence 3334445577889999999999988876543221111122367888888776532 1 246778888888776621
Q ss_pred chhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--hhhHH--H
Q psy6027 178 SDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--FNHVK--N 253 (531)
Q Consensus 178 sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~t~vr--~ 253 (531)
++....+.+ ..+||.++.-+.+. ..+....|..+|.+|..... ...+. .
T Consensus 150 -~~~~~~~~~----~g~i~~L~~lL~~~----------------------~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g 202 (528)
T 4b8j_A 150 -SENTKVVID----HGAVPIFVKLLGSS----------------------SDDVREQAVWALGNVAGDSPKCRDLVLANG 202 (528)
T ss_dssp -HHHHHHHHH----TTHHHHHHHHTTCS----------------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred -HHHHHHHHh----CCcHHHHHHHhcCC----------------------CHHHHHHHHHHHHHHhCCChhhHHHHHHCC
Confidence 121111111 14688887766421 11345567778888864321 11122 2
Q ss_pred HHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhc-CCCChHHHHHHHHHHHHH
Q psy6027 254 VIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDH-HSSPSLIRAKIADALSKI 322 (531)
Q Consensus 254 vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~l 322 (531)
++.+++..+..+..|.-...|..++..+.... +.....+...++..|..- ...++.++...+.++..+
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 67788888854443333444555554443221 223333333333333332 235688888877776654
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.98 E-value=3.9 Score=41.01 Aligned_cols=189 Identities=15% Similarity=0.072 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhch--HHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 172 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~v 172 (531)
...+..+-.+|++.+++++..|+.++..++.... .+.... .+.++.+.++.... .+ ..+|..++.+|..+
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~~l~~~-~~----~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST---MCRDYVLDCNILPPLLQLFSKQ-NR----LTMTRNAVWALSNL 177 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTCHHHHHHHTTSC-CC----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHCCCHHHHHHHhcCC-CC----HHHHHHHHHHHHHH
Confidence 4567777778888899999999988887775321 221111 24677777776631 12 35788888888888
Q ss_pred hhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--hhh
Q psy6027 173 IRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--FNH 250 (531)
Q Consensus 173 V~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~t~ 250 (531)
..... ... ....+..++|.++.-+.+. +.+....|-.+|.++..... ...
T Consensus 178 ~~~~~-~~~-----~~~~~~~~l~~L~~~l~~~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~ 229 (450)
T 2jdq_A 178 CRGKS-PPP-----EFAKVSPCLNVLSWLLFVS----------------------DTDVLADACWALSYLSDGPNDKIQA 229 (450)
T ss_dssp HCCSS-SCC-----CGGGTGGGHHHHHHHTTCC----------------------CHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred hCCCC-CCC-----CHHHHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 75310 000 0112457889888776421 11123345566777754321 111
Q ss_pred H--HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q psy6027 251 V--KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKII 323 (531)
Q Consensus 251 v--r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv 323 (531)
+ ..++.+++..+.+. .|.-..-|..++..+......+ ...-++..+++.|.+ .++.+|...+.+++.++
T Consensus 230 ~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 230 VIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTISNIT 304 (450)
T ss_dssp HHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence 1 23567777777643 3433455556555553211111 011256666666654 35788888877776543
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=78.30 E-value=9.4 Score=39.87 Aligned_cols=190 Identities=12% Similarity=0.096 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 96 SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 96 s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
..+..+-.+|.+.+.+++..++.++..++......... .....+++.+..+.... | ..+|...+.+|..+...
T Consensus 215 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~lL~~~--d----~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW-SVVSQALPTLAKLIYSM--D----TETLVDACWAISYLSDG 287 (530)
T ss_dssp TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH-HHHGGGHHHHHHHTTCC--C----HHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHhHHHHHHHHHcCC--C----HHHHHHHHHHHHHHhCC
Confidence 45555556666778888888999999988654232122 22356788888877642 3 35778888888877652
Q ss_pred ccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh-hhh-H--
Q psy6027 176 TVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS-FNH-V-- 251 (531)
Q Consensus 176 ~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~-~t~-v-- 251 (531)
. ++....+.+ ..++|.++.-+.+. ..+....|-.+|.+|..... .+. +
T Consensus 288 ~--~~~~~~~~~----~~~v~~Lv~lL~~~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 288 P--QEAIQAVID----VRIPKRLVELLSHE----------------------STLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp C--HHHHHHHHH----TTCHHHHHHGGGCS----------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred C--HHHHHHHHh----cCcHHHHHHHHCCC----------------------ChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 111111111 15788888777421 11123345566777653321 111 1
Q ss_pred HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccC----cchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy6027 252 KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQY----SHLIVNCILAYLNDHHSSPSLIRAKIADALSKIIS 324 (531)
Q Consensus 252 r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~----~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~ 324 (531)
..++..++..+.+.+ |.-..-|..++..+....+.+- ..-++..|++.|.. .++.+|...+.++..++.
T Consensus 340 ~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 340 AGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV---AEYKTKKEACWAISNASS 412 (530)
T ss_dssp TTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHh
Confidence 136677777777653 4335555555555543111111 12356677777754 357888888888876654
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=76.45 E-value=4.6 Score=42.13 Aligned_cols=210 Identities=14% Similarity=0.125 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHccccccc-ccHHHHHHHHHHHHhcCC-chhHHHhHHHHHHHHhccCCchhhhhch--HHHHHHHHhhhh
Q psy6027 74 AMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLESLD-PDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCH 149 (531)
Q Consensus 74 tl~i~~~Ll~~C~~~~l~-LFa~s~L~Ii~~LL~s~~-~~l~i~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~ 149 (531)
++..+++++......... +.....+..+-.+|.+.+ ++++..|+..+..++.... .+.... .+.|+.+.++..
T Consensus 94 A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS---ENTKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH---HHHHHHHhCCcHHHHHHHhc
Confidence 445566666554311122 223345555666777655 8999999998888875322 222211 257888888877
Q ss_pred hccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCC
Q psy6027 150 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQE 229 (531)
Q Consensus 150 ~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e 229 (531)
.. + ..+|..++.+|..+... ++.....+.+ ..++|.++.-+.... ..
T Consensus 171 ~~--~----~~v~~~a~~aL~~l~~~--~~~~~~~i~~----~g~l~~Ll~lL~~~~---------------------~~ 217 (528)
T 4b8j_A 171 SS--S----DDVREQAVWALGNVAGD--SPKCRDLVLA----NGALLPLLAQLNEHT---------------------KL 217 (528)
T ss_dssp CS--C----HHHHHHHHHHHHHHHHT--CHHHHHHHHH----TTCHHHHHHTCCTTC---------------------CH
T ss_pred CC--C----HHHHHHHHHHHHHHhCC--ChhhHHHHHH----CCcHHHHHHHHhcCC---------------------CH
Confidence 52 3 25788888888877652 1111111111 136888876663110 11
Q ss_pred ChHHHHHHHHHHHHhhh---hhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHHhh
Q psy6027 230 DPPALAETCLRELMSRA---SFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAYLN 302 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a---~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~HLd 302 (531)
+....|-.||.+|.... ....+..++..++..+.+.+ |.-..-|..++..+......+ ...-++..|++-|.
T Consensus 218 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 218 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 23345667777876542 12234556677777765433 211233333333332110000 01124556666555
Q ss_pred hcCCCChHHHHHHHHHHHHHH
Q psy6027 303 DHHSSPSLIRAKIADALSKII 323 (531)
Q Consensus 303 ~~~~~~p~~r~~Iv~vls~lv 323 (531)
+. ++.++...+.++..++
T Consensus 297 ~~---~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 297 HP---SPSVLIPALRTVGNIV 314 (528)
T ss_dssp CS---CHHHHHHHHHHHHHHT
T ss_pred CC---ChhHHHHHHHHHHHHH
Confidence 43 4778887777766543
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=74.27 E-value=16 Score=33.50 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccc
Q psy6027 99 KIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVS 178 (531)
Q Consensus 99 ~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~s 178 (531)
.-+..+|.+.+++.+..|+..+..+.....+.-... .-.+.|+.+.++-... + ..+|..++.+|..+... +
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~-~~~g~i~~L~~lL~~~--~----~~v~~~a~~~L~~l~~~--~ 85 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAV-IDAGALPALVQLLSSP--N----EQILQEALWALSNIASG--G 85 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHGGGCS--C----HHHHHHHHHHHHHHTTS--C
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHH-HHcCcHHHHHHHHcCC--C----HHHHHHHHHHHHHHhcC--C
Confidence 345567789999999999998866543321110111 1135788888887653 2 34788888888887652 1
Q ss_pred hhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhh--hH--HHH
Q psy6027 179 DDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFN--HV--KNV 254 (531)
Q Consensus 179 d~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t--~v--r~v 254 (531)
++....+.+ ..++|.++.-+.+. .......|-.+|.+|....... .+ ..+
T Consensus 86 ~~~~~~i~~----~g~i~~L~~lL~~~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 139 (252)
T 4db8_A 86 NEQIQAVID----AGALPALVQLLSSP----------------------NEQILQEALWALSNIASGGNEQIQAVIDAGA 139 (252)
T ss_dssp HHHHHHHHH----TTHHHHHHHGGGCS----------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHHHHHH----cCCHHHHHHHHcCC----------------------CHHHHHHHHHHHHHhhcCCchHHHHHHHCCC
Confidence 222222211 13688877666421 1123455667777775432211 11 136
Q ss_pred HHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccC----cchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q psy6027 255 IQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQY----SHLIVNCILAYLNDHHSSPSLIRAKIADALSKII 323 (531)
Q Consensus 255 l~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~----~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv 323 (531)
+..++..+++.+ |.-...|..++..+...-+.+. ..-++..|++-|.+. ++.++...+.++..++
T Consensus 140 i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 140 LPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHh
Confidence 777888887653 2224445555555532111111 123456666666543 6888888888777553
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=69.47 E-value=1.3e+02 Score=32.47 Aligned_cols=233 Identities=15% Similarity=0.182 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCCCh
Q psy6027 230 DPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPS 309 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~~p 309 (531)
+..+.|..+|..+.... ...+......++..+++.+ ...-...+..+.......+--.|+..+++++.. .++
T Consensus 328 ~vr~~aL~~L~~i~~~~-p~~~~~~~~~i~~~l~d~d----~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~---~d~ 399 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTD-HNAVQRHRSTIVDCLKDLD----VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS---CEP 399 (618)
T ss_dssp TTHHHHHHHHHHHHHHH-HHHHGGGHHHHHHGGGSSC----HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH---CCH
T ss_pred chHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHccCCC----hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh---CCH
Confidence 55667777776665442 2223444455666665433 222222233333333455656788889888876 468
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHH
Q psy6027 310 LIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIEL--ISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHAL 387 (531)
Q Consensus 310 ~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL--~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~ 387 (531)
.+|..++..+..++. .-.+..-..+..++..|+..- ...|++. .++-.+. .+ |.-++-.+..+
T Consensus 400 e~r~~~v~~I~~la~-----k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~-~l~~ii~------~~---p~l~~~~v~~L 464 (618)
T 1w63_A 400 EFKADCASGIFLAAE-----KYAPSKRWHIDTIMRVLTTAGSYVRDDAVP-NLIQLIT------NS---VEMHAYTVQRL 464 (618)
T ss_dssp HHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHTGGGSCSSHHH-HHHHHHH------HS---CSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HhCccHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHh------cC---hhHHHHHHHHH
Confidence 899999988876643 223344455666666666652 1333332 2222211 11 22333334333
Q ss_pred HHHHHhhcccccCcchhhHHHHHHHHHhhhccccccchhHHHhhcCCCC--cc--------chhhhhheecccCCccccc
Q psy6027 388 VAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPD--YQ--------KTEILVFIISKVLSTTYRE 457 (531)
Q Consensus 388 ~~~~l~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll~~~~~~~~~lp~--~~--------k~~~~~f~~~k~~~~~~~~ 457 (531)
+..+-.- ... ..+ .| ..+--+|+++..+++ .+ -.+..-++.+-+..+
T Consensus 465 ~~~l~~~---~~~-~~~---------~~------~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 521 (618)
T 1w63_A 465 YKAILGD---YSQ-QPL---------VQ------VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN---- 521 (618)
T ss_dssp HHHHHHC---CSC-SHH---------HH------HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST----
T ss_pred HHHHhcc---ccc-HHH---------HH------HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc----
Confidence 3322211 111 011 01 134456666655433 11 011222222211111
Q ss_pred CCCchhhHHHHHHHHHHHHhhccceeeeecccCCcccHHHHHh-hhccCChhHHHHHHHHHH
Q psy6027 458 SNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLK-ILQSNDAEIRLLVNKEKA 518 (531)
Q Consensus 458 ~~~~~~~~~q~~l~~~ll~v~~~~~~~~~~~~~~~~fl~~ll~-~~~~~d~~~r~~v~~~~~ 518 (531)
.++..+|..+|.++.+++..+... ...+..+|. ..-..|+|+|.-..+.+.
T Consensus 522 ---~~~~~vr~~~lta~~Kl~~~~~~~-------~~~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 522 ---MSTSVTRGYALTAIMKLSTRFTCT-------VNRIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCSSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHhCcch-------HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 245778999999999999876421 234555555 334578899987665544
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=67.63 E-value=84 Score=34.17 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=65.9
Q ss_pred eeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhc
Q psy6027 72 VIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 151 (531)
Q Consensus 72 ~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 151 (531)
.|.++..+.++.- .. -+-+.....+.+..+|.+.+++++-+|..++..++....+. .+...+...+ ......
T Consensus 308 aVl~ea~~~i~~l-~~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~~~~~~~~i---~~~L~~- 379 (621)
T 2vgl_A 308 AVLFEAISLIIHH-DS--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EAVKTHIETV---INALKT- 379 (621)
T ss_dssp HHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HHHHTTHHHH---HHHHTT-
T ss_pred HHHHHHHHHHHhc-CC--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HHHHHHHHHH---HHHhcc-
Confidence 5666666555543 22 23345567778888888899999999999999998766443 3443333222 211111
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccC
Q psy6027 152 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 204 (531)
Q Consensus 152 ~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~ 204 (531)
.+| ..+|.-.|.-|.+++.. .+++.||.-++.-+.+
T Consensus 380 d~d----~~Ir~~aL~lL~~l~~~-------------~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 380 ERD----VSVRQRAVDLLYAMCDR-------------SNAQQIVAEMLSYLET 415 (621)
T ss_dssp CCC----HHHHHHHHHHHHHHCCH-------------HHHHHHHHHHHHHHHH
T ss_pred CCC----HhHHHHHHHHHHHHcCh-------------hhHHHHHHHHHHHHHh
Confidence 223 23677777777777652 2456788877776653
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=66.64 E-value=12 Score=39.16 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
...+..+-.+|.+.+++++..|+.++..++....+....... .+.++.+.++... .+ ..+|..++.+|..++.
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~--~~----~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNS--NK----PSLIRTATWTLSNLCR 244 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGS--CC----HHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhcc--CC----HHHHHHHHHHHHHHhC
Confidence 344566666777889999999998888877432211111111 2567777777765 23 3467778888888775
Q ss_pred cccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--hhhHH
Q psy6027 175 KTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--FNHVK 252 (531)
Q Consensus 175 k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~t~vr 252 (531)
.. +.... ......++|.++.-+.+. +.+....|-.||.+|..... ...+.
T Consensus 245 ~~--~~~~~----~~~~~~~l~~L~~lL~~~----------------------d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 245 GK--KPQPD----WSVVSQALPTLAKLIYSM----------------------DTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp CS--SSCCC----HHHHGGGHHHHHHHTTCC----------------------CHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CC--CCCCc----HHHHHhHHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 31 01000 112346788887766311 11233446677777764321 11111
Q ss_pred --HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy6027 253 --NVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 253 --~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~l 322 (531)
.++..++..+.+.+ |.-..-|..++..+......+ ...-++..+++.|.+. ++.+|...+.+++.+
T Consensus 297 ~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 297 DVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---KENIKKEACWTISNI 368 (530)
T ss_dssp HTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence 35566777776443 433455566665554211111 1123555666666543 578888877777654
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=65.35 E-value=34 Score=36.70 Aligned_cols=201 Identities=12% Similarity=0.138 Sum_probs=109.6
Q ss_pred CCceeeHHHHHHHHHHHccc-----ccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHH
Q psy6027 68 NGYVVIAMEAMDQLLAACHS-----QTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVS 142 (531)
Q Consensus 68 ~g~V~Vtl~i~~~Ll~~C~~-----~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~ 142 (531)
..+-.|..++.+.+..-.+. +.+......+...+-.|+ +.+++++..|..++..++....+. ....+..|
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~--~~~~~~~~-- 324 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI--LKQEIKVF-- 324 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST--TTTCTTTT--
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH--HHHHHHhh--
Confidence 34557888888888775421 112222233333333444 478999999999998888664432 22222222
Q ss_pred HHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccc
Q psy6027 143 KFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETG 222 (531)
Q Consensus 143 ~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d 222 (531)
+|.. .| + ..+|...+..|.+++. ..+.+.|++.++.-+.+.
T Consensus 325 ----~~~~--~d-~--~~Ir~~al~~L~~l~~-------------~~nv~~iv~~L~~~l~~~----------------- 365 (591)
T 2vgl_B 325 ----FVKY--ND-P--IYVKLEKLDIMIRLAS-------------QANIAQVLAELKEYATEV----------------- 365 (591)
T ss_dssp ----SCCT--TS-C--HHHHHHHHHHHHHTCC-------------SSTHHHHHHHHHHHTTSS-----------------
T ss_pred ----eecc--CC-h--HHHHHHHHHHHHHHCC-------------hhhHHHHHHHHHHHHhcC-----------------
Confidence 2322 22 2 4567777777766654 234567888877554311
Q ss_pred cccCCCCChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhh
Q psy6027 223 KMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLN 302 (531)
Q Consensus 223 ~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd 302 (531)
+.+-..-+-.++..+..+- ......+++.++..+...+.|.... |+..+..+....+. .+--++..|++.|+
T Consensus 366 -----d~~~r~~~v~aI~~la~~~-~~~~~~~v~~Ll~ll~~~~~~v~~e-~i~~l~~ii~~~p~-~~~~~v~~L~~~l~ 437 (591)
T 2vgl_B 366 -----DVDFVRKAVRAIGRCAIKV-EQSAERCVSTLLDLIQTKVNYVVQE-AIVVIRDIFRKYPN-KYESIIATLCENLD 437 (591)
T ss_dssp -----CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHHHSCS-SCCTTHHHHHHTTT
T ss_pred -----CHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHcccchHHHHH-HHHHHHHHHHHCcc-hHHHHHHHHHHHHH
Confidence 0011222333344443332 2335678888888887776554433 34445555433333 23345566777765
Q ss_pred hcCCCChHHHHHHHHHHHHH
Q psy6027 303 DHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 303 ~~~~~~p~~r~~Iv~vls~l 322 (531)
. ..+|..+..++.++++.
T Consensus 438 ~--~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 438 S--LDEPDARAAMIWIVGEY 455 (591)
T ss_dssp T--CCSHHHHHHHHHHHHTT
T ss_pred h--ccCHHHHHHHHHHHHcc
Confidence 4 34688888888776643
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.41 E-value=1.3e+02 Score=30.58 Aligned_cols=191 Identities=16% Similarity=0.036 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 94 VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 94 a~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
....+..+-.+|++.+++++..++.++...+...++...... -.+.++.+.++.... + .+.|.....+|..+.
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~--~----~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKT--N----VKFLAITTDCLQILA 171 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH-HHTHHHHHHHGGGCC--C----HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH-HcCCHHHHHHHHhcC--C----HHHHHHHHHHHHHHH
Confidence 334566666677788899999999999888876544312221 246788888887652 2 235666666776544
Q ss_pred hcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh-hhhH-
Q psy6027 174 RKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS-FNHV- 251 (531)
Q Consensus 174 ~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~-~t~v- 251 (531)
.. +++....+.+. ..+|.++.-+.+.+ .+.-..-+..+|+++..... ...+
T Consensus 172 ~~--~~~~~~~i~~~----~~i~~L~~ll~~~~---------------------~~~~~~~a~~~L~~l~~~~~~~~~~~ 224 (529)
T 1jdh_A 172 YG--NQESKLIILAS----GGPQALVNIMRTYT---------------------YEKLLWTTSRVLKVLSVCSSNKPAIV 224 (529)
T ss_dssp TT--CHHHHHHHHHT----THHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred hC--CHHHHHHHHHC----CCHHHHHHHHHhCC---------------------hHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 31 22222222111 34676666553211 00112224566666643221 1111
Q ss_pred -HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc-CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy6027 252 -KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ-YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 252 -r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q-~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~l 322 (531)
..++.+++..+.+++. .-..-|..++..+....+.+ ..--++..|++.|. ..++.++...+.++..+
T Consensus 225 ~~g~~~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 225 EAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNL 293 (529)
T ss_dssp HTTHHHHHHTTTTSSCH-HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCh-HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 1356777777765530 00222333333332221111 11124555555553 35688888887777755
No 36
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=59.12 E-value=18 Score=34.60 Aligned_cols=183 Identities=10% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc-----cccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCC
Q psy6027 55 LYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ-----TLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEED 129 (531)
Q Consensus 55 LekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~-----~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D 129 (531)
|+.|+.+--|+.|.. +++-+.+++...+.. ..+.| ..+...+...+...|...+..|++++..|+.....
T Consensus 14 l~e~l~sk~WK~R~e----ale~l~~~~~~~~~~~~~~~~~~~~-~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYKLWKARLE----AYKELNQLFRNSVGDISRDDNIQIY-WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCSSHHHHHH----HHHHHHHHHHTC----------CCT-TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccCcHHHHHH----HHHHHHHHHhhCcccccchhHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 677777766666542 233444445443321 12223 33445566667667777788888888888864332
Q ss_pred c-hhhh---hchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCC
Q psy6027 130 T-PSYH---RRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 205 (531)
Q Consensus 130 ~-~~y~---~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~ 205 (531)
. ..|. .....+++.+.+=| ..+ .+.++|..++.+|..++.... ..+.++..++.-+.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~---l~~--~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~-- 149 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKG---LTS--SRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFE-- 149 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHT---SSC--CCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGG--
T ss_pred hhcccchhHHHHHHHHHHHHHHH---hcC--ccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHh--
Confidence 1 0121 11223333333211 222 346788899988877765321 22345555554332
Q ss_pred CCCCCCCCCCCCccccccccCCCCChHHHHH--HHHHHHHhh---h--h-hhhHHHHHHHHhhhccCCCCCCC-chhHHH
Q psy6027 206 GHYQSPADPEPEAEETGKMMNLQEDPPALAE--TCLRELMSR---A--S-FNHVKNVIQPVLIHFDHHALWNP-NIFATH 276 (531)
Q Consensus 206 ~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~--~CLr~l~~~---a--~-~t~vr~vl~~vl~~lD~~~~W~~-~~fA~~ 276 (531)
.++|.+.+. .+|..++.. . + ...+..+++.+...+++.+. . +.=|..
T Consensus 150 ----------------------~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~--~VR~aA~~ 205 (278)
T 4ffb_C 150 ----------------------KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDR--NVRSQTMN 205 (278)
T ss_dssp ----------------------CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSH--HHHHHHHH
T ss_pred ----------------------ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcH--HHHHHHHH
Confidence 336765433 444554432 1 1 12245566666667776662 1 556777
Q ss_pred HHHHHHHHh
Q psy6027 277 VLRMLMYSV 285 (531)
Q Consensus 277 ~f~~i~~s~ 285 (531)
++..+..|+
T Consensus 206 l~~~ly~~~ 214 (278)
T 4ffb_C 206 LIVEIYKVT 214 (278)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHh
Confidence 777776665
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=53.65 E-value=59 Score=34.02 Aligned_cols=214 Identities=11% Similarity=0.075 Sum_probs=107.9
Q ss_pred eHHHHHHHHHHHccccccc-ccHHHHHHHHHHHHhc-CCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 73 IAMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLES-LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 73 Vtl~i~~~Ll~~C~~~~l~-LFa~s~L~Ii~~LL~s-~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
-+++.+|+|+..-+...+. +.-...+..+-.+|++ .++++|..|+-.+...+....+..... --.+.|+.|.++-.+
T Consensus 76 ~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v-v~~GaIp~Lv~lL~s 154 (510)
T 3ul1_B 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV-VDGGAIPAFISLLAS 154 (510)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHCCCHHHHHHHHcC
Confidence 4666778887543221111 1122244445556654 678999999988888775432221111 123578889888865
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCC
Q psy6027 151 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQED 230 (531)
Q Consensus 151 ~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~ 230 (531)
. + ..+|..++.||..+... +++....+.+ .-.+|.++.-+...+. . ...
T Consensus 155 ~--~----~~v~e~A~~aL~nLa~d--~~~~r~~v~~----~G~i~~Ll~lL~~~~~---------------~----~~~ 203 (510)
T 3ul1_B 155 P--H----AHISEQAVWALGNIAGD--GSAFRDLVIK----HGAIDPLLALLAVPDL---------------S----TLA 203 (510)
T ss_dssp S--C----HHHHHHHHHHHHHHHTT--CHHHHHHHHH----TTCHHHHHHHTCSSCG---------------G----GSC
T ss_pred C--C----HHHHHHHHHHHHHHHhC--CHHHHHHHHH----cCChHHHHHHHHhccc---------------h----hhh
Confidence 3 3 23677788888877652 1222211111 1356767666642110 0 111
Q ss_pred h--HHHHHHHHHHHHhhh----hhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----CcchhHHHHHHH
Q psy6027 231 P--PALAETCLRELMSRA----SFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----YSHLIVNCILAY 300 (531)
Q Consensus 231 p--~~lA~~CLr~l~~~a----~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----~~~~vls~Lv~H 300 (531)
. ...+..||.++.... ....++.++..+.+.+.+.+.. -...|..++..+...-..+ ...-++..|++.
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~-v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 2 223556677775422 2344667777777777655421 1233444443332110000 011245566666
Q ss_pred hhhcCCCChHHHHHHHHHHHHH
Q psy6027 301 LNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 301 Ld~~~~~~p~~r~~Iv~vls~l 322 (531)
|.+. ++.++...+.++..+
T Consensus 283 L~~~---~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 283 LGAT---ELPIVTPALRAIGNI 301 (510)
T ss_dssp HTCS---CHHHHHHHHHHHHHH
T ss_pred hcCC---ChhhhhHHHHHHHHh
Confidence 6543 466766666665543
No 38
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=53.06 E-value=24 Score=31.56 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=67.8
Q ss_pred CccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcC
Q psy6027 29 LVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL 108 (531)
Q Consensus 29 Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~ 108 (531)
+....|..|+-+|..|...-+.|..-+++++.+---.++. -+|-.++..+..|..+=...|+..+.++.....+.-
T Consensus 22 nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL----~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~ 97 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKL----YAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLV 97 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTS
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhC
Confidence 4556799999999999999999999999998753222222 456677888888887645678877777777766666
Q ss_pred CchhHHHhHHHHHHHHhc
Q psy6027 109 DPDLQILATNSFVRFANI 126 (531)
Q Consensus 109 ~~~l~i~a~~tf~~F~~~ 126 (531)
+++.+.--...|-.|...
T Consensus 98 d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 98 DNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp CHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHhCc
Confidence 666665555666666543
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=52.17 E-value=2.6e+02 Score=30.28 Aligned_cols=230 Identities=14% Similarity=0.171 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHHhhhh-hhhHHHHHHHHhhhcc-CCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcCCC
Q psy6027 230 DPPALAETCLRELMSRAS-FNHVKNVIQPVLIHFD-HHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSS 307 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a~-~t~vr~vl~~vl~~lD-~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~~~ 307 (531)
+..+.|-.+|..+..... ..-+......++..+. +.+ .......+..+...+..+|--.|+..|.+++...
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d----~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~--- 416 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD----VSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA--- 416 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhc---
Confidence 567888888888875531 1223334444555444 222 2333344444444445556678888888888653
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHH
Q psy6027 308 PSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHAL 387 (531)
Q Consensus 308 ~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~ 387 (531)
++..+..++..+..++.- -.......++.+.++++.- .....+|++..++.++ ..+ +..++..+..+
T Consensus 417 d~~~~~~~v~~I~~la~k--~~~~~~~~v~~Ll~ll~~~-~~~v~~ev~~~l~~ii-------~~~---~~~~~~~~~~l 483 (621)
T 2vgl_A 417 DYSIREEIVLKVAILAEK--YAVDYTWYVDTILNLIRIA-GDYVSEEVWYRVIQIV-------INR---DDVQGYAAKTV 483 (621)
T ss_dssp CHHHHHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHH-GGGSCSHHHHHHHHHH-------GGG---CSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhh-cccchHHHHHHHHHHH-------hCC---hhHHHHHHHHH
Confidence 678888888877655421 1222333444444444332 1233556654443332 111 23343333222
Q ss_pred HHHHHhhcccccCcchhhHHHHHHHHHhhhccccccc----hhHHHhhcCCCCccc---hhhhhheecccCCcccccCCC
Q psy6027 388 VAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLL----PELREFAANLPDYQK---TEILVFIISKVLSTTYRESNK 460 (531)
Q Consensus 388 ~~~~l~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll----~~~~~~~~~lp~~~k---~~~~~f~~~k~~~~~~~~~~~ 460 (531)
+.++.. |... + .++ =-+|+++..+++... .+.+-++.++..
T Consensus 484 ----~~~l~~----~~~~---~------------~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--------- 531 (621)
T 2vgl_A 484 ----FEALQA----PACH---E------------NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--------- 531 (621)
T ss_dssp ----HHHHTS----SSCC---H------------HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT---------
T ss_pred ----HHHHcC----ccch---H------------HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc---------
Confidence 111111 1110 0 122 456777766655322 233433333332
Q ss_pred chhhHHHHHHHHHHHHhhccceeeeecccCCcccHHHHHhhhc---cCChhHHHHHHHHHH
Q psy6027 461 SEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQ---SNDAEIRLLVNKEKA 518 (531)
Q Consensus 461 ~~~~~~q~~l~~~ll~v~~~~~~~~~~~~~~~~fl~~ll~~~~---~~d~~~r~~v~~~~~ 518 (531)
.++..+|..+|-++.+++..+.. + ..-+..+|+.+. ..|+|+|.-.-+.++
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p~--~-----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFPE--V-----KATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGG--G-----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHChH--H-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 23467899999999998765421 0 123455565444 689999987665443
No 40
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=47.61 E-value=44 Score=28.84 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=58.1
Q ss_pred ccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhc-C
Q psy6027 30 VKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES-L 108 (531)
Q Consensus 30 n~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s-~ 108 (531)
....|..+.-||..|...-+.|...+++++.+.-..+|. -.|-.++.++..|+...-+.|...|-..+-.++.. .
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL----~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~ 95 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRL----NLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK 95 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHH----HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC
Confidence 345699999999999999999999999998765444443 33567788888997764567877777777666654 3
Q ss_pred CchhH
Q psy6027 109 DPDLQ 113 (531)
Q Consensus 109 ~~~l~ 113 (531)
+++.+
T Consensus 96 ~~~~~ 100 (132)
T 4flb_A 96 DPSVS 100 (132)
T ss_dssp STTTH
T ss_pred CHHHH
Confidence 44433
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=46.62 E-value=3.4e+02 Score=30.07 Aligned_cols=189 Identities=15% Similarity=0.027 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 96 SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 96 s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
..+..+-.+|++.+++++..|+.++...+....+...... -.+.|+.+.++.... + .++|...+.+|+....
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~-~~g~v~~Lv~lL~~~--~----~~v~~~a~~aL~~La~- 305 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKT--N----VKFLAITTDCLQILAY- 305 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH-HTTHHHHHHHGGGCC--C----HHHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH-HcCCHHHHHHHHhcC--C----HHHHHHHHHHHHHHhc-
Confidence 3555566677778888999999998888876543312221 135778888877652 2 2356666667764332
Q ss_pred ccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh-hhhH--H
Q psy6027 176 TVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS-FNHV--K 252 (531)
Q Consensus 176 ~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~-~t~v--r 252 (531)
.+++....+.+. ..++.++.-+...+ .+.....|..+|.+|..... ...+ .
T Consensus 306 -~~~e~~~~i~~~----~~i~~Lv~lL~~~~---------------------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 359 (780)
T 2z6g_A 306 -GNQESKLIILAS----GGPQALVNIMRTYT---------------------YEKLLWTTSRVLKVLSVCSSNKPAIVEA 359 (780)
T ss_dssp -TCHHHHHHHHTT----THHHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHHTSTTHHHHHHHT
T ss_pred -CChHHHHHHHHc----CCHHHHHHHHhcCC---------------------HHHHHHHHHHHHHHhhcChHHHHHHHHh
Confidence 122222222111 34666665553110 11112234566666643221 1111 1
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc-CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy6027 253 NVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ-YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 253 ~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q-~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~l 322 (531)
.++.+++..+.+.+. .-..-|..++..+......+ ..--++..|++.|. ..++.+|...+.++..+
T Consensus 360 g~l~~Ll~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~---~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNL 426 (780)
T ss_dssp THHHHHGGGTTCSCH-HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCch-HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 246777777765431 00122222333332211111 12235555665554 35688888888777654
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=44.53 E-value=89 Score=32.69 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
..++..+..+|.+.+++++.-+|..+...+....+. .-.-.-.++++.+.++.... + ..++...+++|..++.
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~v~~~g~i~~Lv~lL~~~--~----~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER-IEMVVKKGVVPQLVKLLGAT--E----LPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-HHHHHTTTCHHHHHHHHTCS--C----HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhh-HHHHHhccchHHHHHHhcCC--C----hhHHHHHHHHHHHHHc
Confidence 456677777888888888888877766555332221 11111234666666665432 3 2367778888887765
Q ss_pred cccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhh-h-hhhH-
Q psy6027 175 KTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRA-S-FNHV- 251 (531)
Q Consensus 175 k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a-~-~t~v- 251 (531)
. +|.....+.+. .++|.+..-+... ..+....|-.+|.+|.... . ...+
T Consensus 323 ~--~~~~~~~i~~~----g~l~~L~~LL~~~----------------------~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 323 G--TDEQTQKVIDA----GALAVFPSLLTNP----------------------KTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp S--CHHHHHHHHHT----TGGGGHHHHTTCS----------------------SHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred c--chHHHHHHhhc----ccHHHHHHHHcCC----------------------CHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2 33332222211 2344333333210 1123445666777775432 1 1111
Q ss_pred -HHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHh-hccCcch----hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy6027 252 -KNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSV-QSQYSHL----IVNCILAYLNDHHSSPSLIRAKIADALSKIISI 325 (531)
Q Consensus 252 -r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~-q~Q~~~~----vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~ 325 (531)
..++.+++..+.+.+ +.-..-|..++..+.... ..|-.|+ ++..|++-|+. .++.++..++..+..+...
T Consensus 375 ~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 375 NHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Confidence 125667777776654 222334444444443322 1122222 46667766653 4688888888877766554
Q ss_pred h
Q psy6027 326 A 326 (531)
Q Consensus 326 a 326 (531)
+
T Consensus 451 ~ 451 (529)
T 3tpo_A 451 A 451 (529)
T ss_dssp H
T ss_pred h
Confidence 3
No 43
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=40.46 E-value=1.1e+02 Score=34.53 Aligned_cols=109 Identities=15% Similarity=0.249 Sum_probs=66.8
Q ss_pred hhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCce-eeHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcC--C
Q psy6027 33 NMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYV-VIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--D 109 (531)
Q Consensus 33 ~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V-~Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~--~ 109 (531)
-+|.+..|...+|.-++.+-.+|-+.+ | ..| .-+..++..|.+.|+++ +.-|.+.++..+..+++.. +
T Consensus 529 ~l~~~~~~l~~~~~~l~~vl~~l~~~l--~------~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~ 599 (971)
T 2x1g_F 529 TMGSYCNWLMENPAYIPPAINLLVRGL--N------SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMK 599 (971)
T ss_dssp HHHHTHHHHC----CHHHHHHHHHHHH--H------SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHh--C------hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCC
Confidence 356677777788988999999998877 3 223 34556788999999986 8777788888888888763 4
Q ss_pred chhHHHhHHHHHHHHhcc--CCchhhhhch-HHHHHHHHhhhhh
Q psy6027 110 PDLQILATNSFVRFANIE--EDTPSYHRRY-DFFVSKFSALCHS 150 (531)
Q Consensus 110 ~~l~i~a~~tf~~F~~~~--~D~~~y~~~y-~~~V~~f~~la~~ 150 (531)
.+.+....+++...+... ++...|...+ ..++..+.+.+..
T Consensus 600 ~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555566666665432 2222343332 3444444444433
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=35.61 E-value=72 Score=33.34 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
..++..+..+|.+.+++++.-+|.++...+....+. .-.-...++++.+.++.... + ..++..++++|..++.
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~--~----~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER-IEMVVKKGVVPQLVKLLGAT--E----LPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-HHHHHTTTCHHHHHHHHTCS--C----HHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhh-HHHHHhcccchhhhhhhcCC--C----hhhhhHHHHHHHHhhc
Confidence 556677777888888888888887776655332211 11111234666666665532 2 2367777888877765
Q ss_pred cccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHH--
Q psy6027 175 KTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVK-- 252 (531)
Q Consensus 175 k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr-- 252 (531)
. +|.....+.+. .++|.+..-+. .. ..+....|-.+|.+|.... ..+..
T Consensus 304 ~--~~~~~~~i~~~----g~l~~L~~LL~------------------~~----~~~v~~~A~~aL~nl~a~~-~~~~~~v 354 (510)
T 3ul1_B 304 G--TDEQTQKVIDA----GALAVFPSLLT------------------NP----KTNIQKEATWTMSNITAGR-QDQIQQV 354 (510)
T ss_dssp S--CHHHHHHHHHT----TGGGGCC-CTT------------------CS----SHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred C--CHHHHHHHhhc----cchHHHHHHhc------------------CC----CHHHHHHHHHHHHHHHcCc-HHHHHHH
Confidence 2 22221111110 12222211110 00 1124455667777875422 11111
Q ss_pred ---HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHh-hccCcc----hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy6027 253 ---NVIQPVLIHFDHHALWNPNIFATHVLRMLMYSV-QSQYSH----LIVNCILAYLNDHHSSPSLIRAKIADALSKIIS 324 (531)
Q Consensus 253 ---~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~-q~Q~~~----~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~ 324 (531)
.++.+++..+.+.+ +.-..-|..++..+.... ..|-.| -++..|++-|+. .++.++..+++.+..+..
T Consensus 355 ~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 25666777776654 222334444444443322 112222 245556655543 467888888887776655
Q ss_pred H
Q psy6027 325 I 325 (531)
Q Consensus 325 ~ 325 (531)
.
T Consensus 431 ~ 431 (510)
T 3ul1_B 431 A 431 (510)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=33.35 E-value=35 Score=30.31 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
...+..+-.+|++.+++++..++..+..++....+..... .-.+.++.+.++... ++ ..+|...+.+|+.+.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~--~~----~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSH--EN----EKIQKEAQEALEKLQ 208 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHGGGC--SC----HHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHhC--CC----HHHHHHHHHHHHHHh
Confidence 4466666677777788888888888888775432221111 123577777777764 23 235666666666543
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=33.07 E-value=1e+02 Score=30.42 Aligned_cols=74 Identities=5% Similarity=0.038 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhh
Q psy6027 95 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 174 (531)
Q Consensus 95 ~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~ 174 (531)
...+..+-.+|.+.+..++.-+|-.+..++....+.-.+..+ .++++.+++|-... | ..+|...++||..++.
T Consensus 166 ~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~--d----~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 166 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTE--H----SPFHEHVLGALCSLVT 238 (296)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSC--C----STHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCC--C----hhHHHHHHHHHHHHHh
Confidence 367778888888899999999998888887654333233332 46889999887654 2 2378888888888876
Q ss_pred c
Q psy6027 175 K 175 (531)
Q Consensus 175 k 175 (531)
.
T Consensus 239 ~ 239 (296)
T 1xqr_A 239 D 239 (296)
T ss_dssp T
T ss_pred C
Confidence 3
No 47
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=32.90 E-value=1.3e+02 Score=26.79 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=48.9
Q ss_pred ccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc---cccccHHHHHHHHHHH
Q psy6027 30 VKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ---TLNLFVESFLKIVQKL 104 (531)
Q Consensus 30 n~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~Ll~~C~~~---~l~LFa~s~L~Ii~~L 104 (531)
..+.|..|+-+|..|...-..|..-+++++.+--.+++. -.|-+++.++..++++ ..+-|++.|-+.+-.+
T Consensus 22 S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL----~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~ 95 (145)
T 3d9j_A 22 SKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV----PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIIST 95 (145)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccee----ehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHH
Confidence 457899999999999998888888888888775444444 4556677777777763 0124666654444333
No 48
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=28.83 E-value=22 Score=29.33 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=24.7
Q ss_pred hhhhcccCcCCCCCCCccchhhHHHHHHhh
Q psy6027 14 KRLVDNIFPLSPEEGLVKTNMEKLTFYALS 43 (531)
Q Consensus 14 kkLV~~~YP~~p~~~Pn~s~lskL~yYA~s 43 (531)
+|||..|||......-++..|..|+.||.+
T Consensus 20 ~Klv~aI~P~pdp~a~~d~rm~~l~~yArk 49 (81)
T 1kdx_A 20 HKLVQAIFPTPDPAALKDRRMENLVAYAKK 49 (81)
T ss_dssp HHHHHHHSCCSSGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhhhhhHHHHHHHHHHHH
Confidence 579999999865566688899999999853
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=28.41 E-value=1e+02 Score=36.03 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhh-cCCCC
Q psy6027 230 DPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLND-HHSSP 308 (531)
Q Consensus 230 ~p~~lA~~CLr~l~~~a~~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~-~~~~~ 308 (531)
.....|...+..++..-+..-++.++..++.++++.+.|..+--|..++..+....+.|-.+-+...+ -.+.+ .....
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~d~k 188 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELI-PVLSETMWDTK 188 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH-HHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchh-cchHhhcccCc
Confidence 45667888888888766554579999999999999999988888999999998766666555444332 33322 33445
Q ss_pred hHHHHHHHHH
Q psy6027 309 SLIRAKIADA 318 (531)
Q Consensus 309 p~~r~~Iv~v 318 (531)
|.++..=..+
T Consensus 189 ~~v~~~~~~~ 198 (986)
T 2iw3_A 189 KEVKAAATAA 198 (986)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554433333
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=27.44 E-value=5.8e+02 Score=27.04 Aligned_cols=190 Identities=15% Similarity=0.035 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027 94 VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI 173 (531)
Q Consensus 94 a~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV 173 (531)
....+..+-.+|++.+++++..++.++...+...++..... .-.+.++.+.++-... + .+.+.+.+.+|..+.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v-~~~g~i~~Lv~lL~~~--~----~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT--N----VKFLAITTDCLQILA 168 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH-HHTTHHHHHHHGGGCC--C----HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHH-HHCCChHHHHHHHCcC--C----HHHHHHHHHHHHHHH
Confidence 34466667777888889999999999998887653321111 1246788888887653 2 257777777777665
Q ss_pred hcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh-hhhHH
Q psy6027 174 RKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS-FNHVK 252 (531)
Q Consensus 174 ~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~-~t~vr 252 (531)
.. +++....+.+ ...||.++.-+...+ .+....-+-.+|+++..... ...+.
T Consensus 169 ~~--~~~~~~~i~~----~g~v~~Lv~lL~~~~---------------------~~~~~~~a~~~L~nLs~~~~~~~~l~ 221 (644)
T 2z6h_A 169 YG--NQESKLIILA----SGGPQALVNIMRTYT---------------------YEKLLWTTSRVLKVLSVCSSNKPAIV 221 (644)
T ss_dssp TT--CHHHHHHHHH----TTHHHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred hc--CcHHHHHHHH----cCChHHHHHHHHcCC---------------------hHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 41 2222222211 135777776664211 01122235566666643211 11111
Q ss_pred --HHHHHHhhhccCCCCCCC--chhHHHHHHHHHHHhhcc-CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q psy6027 253 --NVIQPVLIHFDHHALWNP--NIFATHVLRMLMYSVQSQ-YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKII 323 (531)
Q Consensus 253 --~vl~~vl~~lD~~~~W~~--~~fA~~~f~~i~~s~q~Q-~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv 323 (531)
.++.+++..+.+.+ + ..-|..++..+....+.+ ..--++..|++.|. ..++.+|...+.++..+.
T Consensus 222 ~~g~l~~L~~ll~~~~---~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~---~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 222 EAGGMQALGLHLTDPS---QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HTTHHHHHHTTTTCSC---HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 25677777776543 2 222333333332211111 11124555555554 346888888888777553
No 51
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=27.11 E-value=7e+02 Score=27.94 Aligned_cols=60 Identities=10% Similarity=0.246 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy6027 137 YDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 203 (531)
Q Consensus 137 y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~ 203 (531)
++.+++.+...-.....++ .....+.-.+.+|+++++..+.+.. . .-.+.++|++..-++
T Consensus 592 ~~~l~~~L~~~l~~~~~~~-~~~~~~~~~~e~l~~l~~~~~~~~~-~-----~~~~~~~p~~~~iL~ 651 (960)
T 1wa5_C 592 FPQLLAQFIEIVTIMAKNP-SNPRFTHYTFESIGAILNYTQRQNL-P-----LLVDSMMPTFLTVFS 651 (960)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHTSCGGGH-H-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCCcchH-H-----HHHHHHHHHHHHHHH
Confidence 4445555554444321111 1134556678889888885222221 1 123567887766664
No 52
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=25.02 E-value=4.6e+02 Score=27.84 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=87.7
Q ss_pred cccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhh
Q psy6027 91 NLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ 170 (531)
Q Consensus 91 ~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~ 170 (531)
+.++...+..+-.+|.+.+++.+..|+.++...+...... .-.....+.++.+.++-... .+ ...|..+.++|.
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~-~~----~~~~~~A~~~L~ 82 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-ND----VETARCTAGTLH 82 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC-CC----HHHHHHHHHHHH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC-CC----HHHHHHHHHHHH
Confidence 3445556677777888899999999999998888654321 11222345666666655432 23 235667777777
Q ss_pred hhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhh--h
Q psy6027 171 GVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRAS--F 248 (531)
Q Consensus 171 ~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~--~ 248 (531)
.+.. .++....+.+ ..+||.++.-+... ..+....|-.+|++|....+ .
T Consensus 83 ~Ls~---~~~~~~~i~~----~g~i~~Lv~lL~~~----------------------~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 83 NLSH---HREGLLAIFK----SGGIPALVKMLGSP----------------------VDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHTT---SHHHHHHHHT----TTHHHHHHHHTTCS----------------------SHHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHhc---ChhhHHHHHH----cCCHHHHHHHHhCC----------------------CHHHHHHHHHHHHHHHhCcchhH
Confidence 6544 2222222222 15788887766421 11245667888888865421 1
Q ss_pred hhH--HHHHHHHhhhccCCCCCCCchhHHHHHHHHH
Q psy6027 249 NHV--KNVIQPVLIHFDHHALWNPNIFATHVLRMLM 282 (531)
Q Consensus 249 t~v--r~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~ 282 (531)
..+ ..++.+++..+.+.+ |.-...|..++..+.
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHH
Confidence 112 246778888887764 322333344454443
No 53
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=21.97 E-value=2.4e+02 Score=25.18 Aligned_cols=107 Identities=8% Similarity=0.026 Sum_probs=64.7
Q ss_pred CCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHcccc-cccccHHHHHHHHHH
Q psy6027 28 GLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQ-TLNLFVESFLKIVQK 103 (531)
Q Consensus 28 ~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~V---tl~i~~~Ll~~C~~~-~l~LFa~s~L~Ii~~ 103 (531)
.|+-.-+=-+|....+.|.--.-..+-|.||+. .+|..| +|.+++.++..|-.. +.-+-...|++-+..
T Consensus 26 ~~dw~~ileicD~I~~~~~~pk~a~ral~krl~-------~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 26 ELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ-------SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp SCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 355566667788888888654444555666653 345444 455667777777653 233345677777777
Q ss_pred HHhc------CCchhHHHhHHHHHHHHhccCCchhhhhchHHHH
Q psy6027 104 LLES------LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFV 141 (531)
Q Consensus 104 LL~s------~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V 141 (531)
++.. .+.+++.-....+..|+.--.+.|.|..-|+.+.
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLK 142 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7742 4666666667777777754334446655555543
No 54
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=20.97 E-value=3.5e+02 Score=30.13 Aligned_cols=130 Identities=6% Similarity=0.128 Sum_probs=72.8
Q ss_pred hHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCcee-eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcC--Cch
Q psy6027 35 EKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVV-IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--DPD 111 (531)
Q Consensus 35 skL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~-Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~--~~~ 111 (531)
|.+..|-..+|.=++.+-.+|-+.+. | ..|+ -+..++..|...|++. +.-|.+.++..+..+++.. +.+
T Consensus 514 ~~~~~~l~~~~~~l~~vl~~l~~~l~-~------~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~ 585 (963)
T 2x19_B 514 GALSEWLADHPVMINSVLPLVLHALG-N------PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTS 585 (963)
T ss_dssp HHTHHHHHHCHHHHTTTHHHHHHHTT-C------GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhC-C------chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChH
Confidence 44445555566666666666665542 1 2232 3556788899999985 7777788888887888753 345
Q ss_pred hHHHhHHHHHHHHhccCCchhhhhchHHHHHHH----HhhhhhccCChhHHHHHHHHHHhhhhhhhhc
Q psy6027 112 LQILATNSFVRFANIEEDTPSYHRRYDFFVSKF----SALCHSNYADVTKRNKLRLAGIRGIQGVIRK 175 (531)
Q Consensus 112 l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f----~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k 175 (531)
.+....+++...+.... ......-++.+++.+ -+.+... .+ +.....+..-+.+|.++++.
T Consensus 586 ~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~-~~-~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 586 QCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEI-PN-PSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSC-SC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCC-CC-HHHHHHHHHHHHHHHHHHHH
Confidence 55555566666654332 112333344444333 3333221 23 23334455667777777664
No 55
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=20.50 E-value=4.4e+02 Score=26.37 Aligned_cols=179 Identities=10% Similarity=0.023 Sum_probs=93.3
Q ss_pred CchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhhhcccchhhhhhcccc
Q psy6027 109 DPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWES 188 (531)
Q Consensus 109 ~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~ 188 (531)
+++++..|+.++...|...++.........++|+.+.++.... ++ ..+..+..||+.+.... +++....+-+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~--~~----~v~~~A~~aL~nLs~~~-~~~~k~~i~~- 168 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE--SE----DLQQVIASVLRNLSWRA-DVNSKKTLRE- 168 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS--CH----HHHHHHHHHHHHHHTTC-CHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC--CH----HHHHHHHHHHHHHhccC-CHHHHHHHHH-
Confidence 4677888888888887554333344455778899999998752 32 25556666666664421 1222111111
Q ss_pred cccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhh--hhhhH---HHHHHHHhhhcc
Q psy6027 189 THMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRA--SFNHV---KNVIQPVLIHFD 263 (531)
Q Consensus 189 ~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a--~~t~v---r~vl~~vl~~lD 263 (531)
.-.||.++.-+.... +.+...-|-.+|.+|.... +...+ ..++.+++..+.
T Consensus 169 ---~G~Ip~Lv~lL~~~~---------------------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~ 224 (354)
T 3nmw_A 169 ---VGSVKALMECALEVK---------------------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 224 (354)
T ss_dssp ---TTHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc
Confidence 135777665542110 1112344667788886522 22233 246677777665
Q ss_pred CCC--CCCC-chhHHHHHHHHHHH--hhccCc-----chhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy6027 264 HHA--LWNP-NIFATHVLRMLMYS--VQSQYS-----HLIVNCILAYLNDHHSSPSLIRAKIADALSKI 322 (531)
Q Consensus 264 ~~~--~W~~-~~fA~~~f~~i~~s--~q~Q~~-----~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~l 322 (531)
.++ .|.. ..-|..++..+..- ....++ +=.+..|++.|.+. ++.++..-+.++..+
T Consensus 225 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNL 290 (354)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC---ChHHHHHHHHHHHHH
Confidence 443 2322 23344555555431 011111 22466777777643 356666666665544
No 56
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.07 E-value=2.7e+02 Score=26.31 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=74.5
Q ss_pred hhhhhcccCcCCCCCCCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHcccc-
Q psy6027 13 YKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQ- 88 (531)
Q Consensus 13 ykkLV~~~YP~~p~~~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~V---tl~i~~~Ll~~C~~~- 88 (531)
|..+|++.=-.. -..|+-+-+=-++....+.+.--.-..+.|.||+. .+|..| +|.+++.++..|-..
T Consensus 9 ~~~~i~kAT~~~-~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~-------~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 9 FERLLDKATSQL-LLETDWESILQICDLIRQGDTQAKYAVNSIKKKVN-------DKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHTCTT-CSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCC-CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHhcchHH
Confidence 444555442221 13456666667888888888765556667777765 344444 555667777777663
Q ss_pred cccccHHHHHHHHHHHHhc-CCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhh
Q psy6027 89 TLNLFVESFLKIVQKLLES-LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 150 (531)
Q Consensus 89 ~l~LFa~s~L~Ii~~LL~s-~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 150 (531)
+.-+-...|++-+..++.. .+.+++.-....+..|+.--.+.|.| ..+..-|-.|-..
T Consensus 81 ~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l----~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKY----KVVQDTYQIMKVE 139 (226)
T ss_dssp HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGGG----HHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcch----HHHHHHHHHHHhc
Confidence 2334456777777777765 56677777777777777432222233 3355555544444
Done!